BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00050888
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...    73   2e-11
ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...    72   6e-11
gb|AFK40333.1| unknown [Lotus japonicus]                               72   6e-11
emb|CBI26363.3| unnamed protein product [Vitis vinifera]               71   1e-10
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...    71   1e-10

>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 29/99 (29%)
 Frame = +1

Query: 4   LSFKIFQEEVIEGVVYKIMKHEVF*TRRWGG----------------------------- 96
           ++FKIF+ E++EGVV+K++KH VF   R G                              
Sbjct: 79  ITFKIFRGEILEGVVHKVLKHGVF--IRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKT 136

Query: 97  SRIEKDAAVRCIVIGVKYMEA*KEFQAAVSLEGDYLGPI 213
           S+IEKD  VR IVIG K++EA +EFQA VSLEGDYLGP+
Sbjct: 137 SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 175


>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 29/99 (29%)
 Frame = +1

Query: 4   LSFKIFQEEVIEGVVYKIMKHEVF*TRRWGG----------------------------- 96
           ++FK+++ E++EGVV+K++KH VF   R G                              
Sbjct: 78  ITFKLYRGEILEGVVHKVLKHGVF--LRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKL 135

Query: 97  SRIEKDAAVRCIVIGVKYMEA*KEFQAAVSLEGDYLGPI 213
           S+IEKD  VR IVIG K++EA +EFQA VSLEGDYLGP+
Sbjct: 136 SKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 174


>gb|AFK40333.1| unknown [Lotus japonicus]
          Length = 180

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 27/97 (27%)
 Frame = +1

Query: 4   LSFKIFQEEVIEGVVYKIMKHEVF*T-----------------RRWGG----------SR 102
           ++FK+F+ E++EGVV+K++KH VF                   R + G          S+
Sbjct: 79  VTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMADYRYFPGENAYFMNEKASK 138

Query: 103 IEKDAAVRCIVIGVKYMEA*KEFQAAVSLEGDYLGPI 213
           I KD  +R +VIG K+MEA +EFQA VSLEGDYLGPI
Sbjct: 139 IAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPI 175


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 29/100 (29%)
 Frame = +1

Query: 1   CLSFKIFQEEVIEGVVYKIMKHEVF*TRRWGG---------------------------- 96
           C++FK+F+ E+++GVV+K++KH V    R G                             
Sbjct: 143 CVTFKLFRGEILDGVVHKVLKHGVI--LRCGPVENIYLSCQKMPDYRYVPGENPVFLNEK 200

Query: 97  -SRIEKDAAVRCIVIGVKYMEA*KEFQAAVSLEGDYLGPI 213
            S+IEKD  VR IV+G K++EA +EFQA VSLEGDYLGP+
Sbjct: 201 LSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 240


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 29/100 (29%)
 Frame = +1

Query: 1   CLSFKIFQEEVIEGVVYKIMKHEVF*TRRWGG---------------------------- 96
           C++FK+F+ E+++GVV+K++KH V    R G                             
Sbjct: 78  CVTFKLFRGEILDGVVHKVLKHGVI--LRCGPVENIYLSCQKMPDYRYVPGENPVFLNEK 135

Query: 97  -SRIEKDAAVRCIVIGVKYMEA*KEFQAAVSLEGDYLGPI 213
            S+IEKD  VR IV+G K++EA +EFQA VSLEGDYLGP+
Sbjct: 136 LSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 175