BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00050489
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28209.1| contains similarity to reverse transcriptases [Ar...    69   6e-21
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    72   6e-20
gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group...    67   1e-16
gb|ABA99152.1| retrotransposon protein, putative, unclassified [...    69   8e-16
gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc...    69   2e-15

>gb|AAC28209.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267168|emb|CAB77880.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 467

 Score = 68.9 bits (167), Expect(2) = 6e-21
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = +1

Query: 223 VGNGFKIPINGTGHTTLSPPLPLFKINNVLFAPHLIKNLLSVCRLTTDNHIAIEFDPFGF 402
           VGNG  +P    G++ L   +    ++NVL  P +IKNL+SV + T DN++++EFDPFGF
Sbjct: 331 VGNGSSVPTKAIGYSFLPSKIRPLHLHNVLVCPSIIKNLVSVRQFTKDNYVSVEFDPFGF 390

Query: 403 LVKDF 417
            +KDF
Sbjct: 391 SIKDF 395



 Score = 56.6 bits (135), Expect(2) = 6e-21
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = +2

Query: 11  PGPGILGAPPAHAYAASENYYT--PTNIEQALHTMTLNP--DQNWYLDTGATNHMTHSTG 178
           P  G+LG+ P  A   S N  T  P N+  A  T T+    D +WY+DTGAT H+T   G
Sbjct: 256 PAAGLLGSSPQAAMVGSTNQLTQIPANLAAAFGTTTMPDPTDASWYMDTGATTHLTAQPG 315

Query: 179 TLSSYINNSIPNHIVLATVS 238
           TL S  N+S    +V+   S
Sbjct: 316 TLHSLFNSSSSPSVVVGNGS 335


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 71.6 bits (174), Expect(2) = 6e-20
 Identities = 35/64 (54%), Positives = 41/64 (64%)
 Frame = +1

Query: 223 VGNGFKIPINGTGHTTLSPPLPLFKINNVLFAPHLIKNLLSVCRLTTDNHIAIEFDPFGF 402
           VGNG   P+   GH TLS P   F + NVL  P ++KNL+SV +  TDN   IEFDPFGF
Sbjct: 393 VGNGSLAPVETIGHGTLSYPSRSFSLRNVLVCPAIVKNLVSVRKFVTDNWCTIEFDPFGF 452

Query: 403 LVKD 414
            VKD
Sbjct: 453 SVKD 456



 Score = 50.4 bits (119), Expect(2) = 6e-20
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
 Frame = +2

Query: 17  PGILG---APPAHAYAASENYYTPT----------NIEQALHTMTLN-PDQNWYLDTGAT 154
           PGILG   + P HA   +  Y  PT           +  A +TMTL  PD NWY+D+ AT
Sbjct: 310 PGILGPHPSQPTHAAHMANVYPYPTPSAPMSQLPPGLIHAFNTMTLQEPDPNWYMDSAAT 369

Query: 155 NHMTHSTGTLSSYINNS 205
           +H+T + G L S  N S
Sbjct: 370 SHITSNIGNLQSTFNTS 386


>gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53981353|gb|AAV24907.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1679

 Score = 67.4 bits (163), Expect(2) = 1e-16
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +1

Query: 223 VGNGFKIPINGTGHTTLSPPLPLFKINNVLFAPHLIKNLLSVCRLTTDNHIAIEFDPFGF 402
           VGNG  IP+   GH+ +  P   F + ++L +P +IKNL+SV R   DN  ++EFDPFGF
Sbjct: 593 VGNGSTIPVTSIGHSKICHPNCSFTLRDILCSPAIIKNLISVRRFVIDNWCSVEFDPFGF 652

Query: 403 LVKD 414
            VKD
Sbjct: 653 SVKD 656



 Score = 43.9 bits (102), Expect(2) = 1e-16
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = +2

Query: 2   PGTPGPGILGAPPAHAYAASENYYTPTNIEQALHTMTLNPD--QNWYLDTGATNHMTHST 175
           P  P   +    P   +  + + +   ++  + +T TL+     +WY+DTGAT HMT  T
Sbjct: 515 PSQPPTSVALQQPLGWFGGAPSQWDQASLAGSFNTTTLHQPATNDWYMDTGATAHMTSDT 574

Query: 176 G--TLSSYINNSIPNHIVLATVS 238
           G  +LS   N + P+HIV+   S
Sbjct: 575 GILSLSHPPNPNSPSHIVVGNGS 597


>gb|ABA99152.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 989

 Score = 68.9 bits (167), Expect(2) = 8e-16
 Identities = 37/64 (57%), Positives = 44/64 (68%)
 Frame = +1

Query: 223 VGNGFKIPINGTGHTTLSPPLPLFKINNVLFAPHLIKNLLSVCRLTTDNHIAIEFDPFGF 402
           VGNG  +PI  TG TTL+  L     NNVL +P LIKNL+SV + TTDN+ A+EFDP G 
Sbjct: 201 VGNGSLLPITATGTTTLTDSL-----NNVLVSPRLIKNLISVRQFTTDNNCAVEFDPAGC 255

Query: 403 LVKD 414
            VKD
Sbjct: 256 SVKD 259



 Score = 39.3 bits (90), Expect(2) = 8e-16
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 5   GTPGPGILGAPPAHAYAASENY---YTPTNIEQALHTMTLN--PDQNWYLDTGATNHMTH 169
           G P P +    P   Y +       +   ++     TMTL   P+  WY D+GAT+HMT 
Sbjct: 121 GAPLPSLGATTPPGFYNSPTGLPAAWDQQSLASTFSTMTLQQPPNNEWYFDSGATSHMTS 180

Query: 170 STGTLSSYINNSIP 211
            + TLS   ++  P
Sbjct: 181 DSHTLSHPTSSRYP 194


>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1597

 Score = 68.9 bits (167), Expect(2) = 2e-15
 Identities = 31/64 (48%), Positives = 41/64 (64%)
 Frame = +1

Query: 223 VGNGFKIPINGTGHTTLSPPLPLFKINNVLFAPHLIKNLLSVCRLTTDNHIAIEFDPFGF 402
           +GNG  IPI   GHT +      F + ++L +P +IKNL+SV R   DN  ++EFDPFGF
Sbjct: 605 IGNGSSIPITSVGHTNIQHKHSTFTLRDILCSPAIIKNLISVRRFVIDNWCSVEFDPFGF 664

Query: 403 LVKD 414
            VKD
Sbjct: 665 TVKD 668



 Score = 37.7 bits (86), Expect(2) = 2e-15
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +2

Query: 2   PGTPGPGILGAPPAHAYAASENYYTPTNIEQALHTMTLN--PDQNWYLDTGATNHMTHST 175
           P TP     G  P   +  + + +   ++  A +T TL   P   WY+D GAT HMT   
Sbjct: 531 PATPA----GPAPTGWFQGAPSQWDQASLPGAFNTATLQQPPSNEWYMDIGATAHMTSDA 586

Query: 176 GTLS--SYINNSIPNHIVLATVS 238
             LS      +  P+HI++   S
Sbjct: 587 CILSFTHPPTSHDPSHIIIGNGS 609