BLASTX nr result
ID: Atractylodes21_contig00044010
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00044010
(358 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 80 5e-22
dbj|BAA22288.1| polyprotein [Oryza australiensis] 75 3e-20
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 71 2e-19
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 71 2e-19
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 73 2e-19
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 80.5 bits (197), Expect(3) = 5e-22
Identities = 40/63 (63%), Positives = 47/63 (74%)
Frame = -2
Query: 201 FSRYRYVCLLIYGSEVFEVFKEYQNEVENQLDKKMKALRLDRGGEILSQEFNDHFRSYGI 22
FSRY YV L+ + S+ FE FKE+QNEV+NQ K +KALR DRGGE LSQ F+DH R GI
Sbjct: 169 FSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGI 228
Query: 21 ASQ 13
SQ
Sbjct: 229 VSQ 231
Score = 35.4 bits (80), Expect(3) = 5e-22
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 299 RASELLGVIHIEVCS-LN*ATRNGCHYFILITDD 201
RAS+LLG+IH +VC ++ + R YFI TDD
Sbjct: 135 RASDLLGLIHTDVCGPMSTSARGNYQYFITFTDD 168
Score = 33.1 bits (74), Expect(3) = 5e-22
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 358 CKSCILGKMTKAPF*G 311
C+SC+LGKMTKAPF G
Sbjct: 116 CESCLLGKMTKAPFTG 131
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 75.1 bits (183), Expect(3) = 3e-20
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = -2
Query: 201 FSRYRYVCLLIYGSEVFEVFKEYQNEVENQLDKKMKALRLDRGGEILSQEFNDHFRSYGI 22
FSRY Y+ L+ + SE FE FKE+QNEV+N L K +K LR DRGGE +SQEF +H + GI
Sbjct: 525 FSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGI 584
Query: 21 ASQ 13
Q
Sbjct: 585 VPQ 587
Score = 34.7 bits (78), Expect(3) = 3e-20
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 299 RASELLGVIHIEVCS-LN*ATRNGCHYFILITDD 201
RAS+LL ++H +VC ++ R G YFI TDD
Sbjct: 491 RASDLLALVHTDVCGPMSSTARGGYQYFITFTDD 524
Score = 33.1 bits (74), Expect(3) = 3e-20
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 358 CKSCILGKMTKAPF*G 311
C+SC+LGKMTKAPF G
Sbjct: 472 CESCLLGKMTKAPFTG 487
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 71.2 bits (173), Expect(3) = 2e-19
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = -2
Query: 201 FSRYRYVCLLIYGSEVFEVFKEYQNEVENQLDKKMKALRLDRGGEILSQEFNDHFRSYGI 22
FSRY YV L+ + SE FE F+E+QNEV+N L K +K LR DRGGE LS E+ +H + GI
Sbjct: 490 FSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGI 549
Query: 21 ASQ 13
Q
Sbjct: 550 VPQ 552
Score = 36.2 bits (82), Expect(3) = 2e-19
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 311 GLPGRASELLGVIHIEVCS-LN*ATRNGCHYFILITDD 201
G RASELLG++H +VC ++ R G YFI TD+
Sbjct: 452 GQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDE 489
Score = 33.1 bits (74), Expect(3) = 2e-19
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 358 CKSCILGKMTKAPF*G 311
C+SC+LGKMTKAPF G
Sbjct: 437 CESCLLGKMTKAPFTG 452
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 71.2 bits (173), Expect(3) = 2e-19
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = -2
Query: 201 FSRYRYVCLLIYGSEVFEVFKEYQNEVENQLDKKMKALRLDRGGEILSQEFNDHFRSYGI 22
FSRY YV L+ + SE FE F+E+QNEV+N L K +K LR DRGGE LS E+ +H + GI
Sbjct: 403 FSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGI 462
Query: 21 ASQ 13
Q
Sbjct: 463 VPQ 465
Score = 36.2 bits (82), Expect(3) = 2e-19
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 311 GLPGRASELLGVIHIEVCS-LN*ATRNGCHYFILITDD 201
G RASELLG++H +VC ++ R G YFI TD+
Sbjct: 365 GQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDE 402
Score = 33.1 bits (74), Expect(3) = 2e-19
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 358 CKSCILGKMTKAPF*G 311
C+SC+LGKMTKAPF G
Sbjct: 350 CESCLLGKMTKAPFTG 365
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 72.8 bits (177), Expect(3) = 2e-19
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = -2
Query: 201 FSRYRYVCLLIYGSEVFEVFKEYQNEVENQLDKKMKALRLDRGGEILSQEFNDHFRSYGI 22
FSRY YV L+ + S+ FE FKE+QNEV+N L K +K LR DRGGE LS EF +H + GI
Sbjct: 410 FSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGI 469
Query: 21 ASQ 13
Q
Sbjct: 470 VPQ 472
Score = 34.7 bits (78), Expect(3) = 2e-19
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 311 GLPGRASELLGVIHIEVCS-LN*ATRNGCHYFILITDD 201
G +ASELLG++H +VC ++ R G YFI T+D
Sbjct: 372 GQSEKASELLGLVHTDVCGPMSSTARGGFGYFITFTND 409
Score = 33.1 bits (74), Expect(3) = 2e-19
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 358 CKSCILGKMTKAPF*G 311
C+SC+LGKMTKAPF G
Sbjct: 357 CESCLLGKMTKAPFTG 372