BLASTX nr result
ID: Atractylodes21_contig00042604
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00042604
(405 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis... 59 8e-16
emb|CAN65213.1| hypothetical protein VITISV_009492 [Vitis vinifera] 77 1e-15
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 55 1e-14
ref|XP_004149623.1| PREDICTED: uncharacterized protein LOC101211... 61 1e-14
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi... 54 4e-14
>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana]
Length = 1489
Score = 59.3 bits (142), Expect(2) = 8e-16
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +2
Query: 26 YVPLLVHADHIIVTGASTSYVERTKVHISSQFKIKDLG-------VLATKPISQPIYSAQ 184
+V LV+ D I++ + + VE K + S+FKIKDLG +L KP S P+
Sbjct: 1187 FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLGLLGCKPSSIPMDPTL 1246
Query: 185 SLSNTDGDLIPEPTQYQRLVGHLLYLVIS 271
L G +P PT Y++L+G LLYL I+
Sbjct: 1247 HLVRDMGTPLPNPTAYRKLIGRLLYLTIT 1275
Score = 48.9 bits (115), Expect(2) = 8e-16
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 271 SITKPDITFATHTLSQFMSSQWASHMDAGHKLLWYFKRNSDQDI 402
+IT+PDIT+A H LSQF+S+ H+ A HK+L Y K N Q +
Sbjct: 1273 TITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGL 1316
>emb|CAN65213.1| hypothetical protein VITISV_009492 [Vitis vinifera]
Length = 659
Score = 76.6 bits (187), Expect(2) = 1e-15
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Frame = +2
Query: 2 FSKGSGSTYVPLLVHADHIIVTGASTSYVERTKVHISSQFKIKDLG----VLATKPISQP 169
F+K +G +++ LL++ D I++ +E+ K + SQFK+KDLG L KP S P
Sbjct: 479 FTKRNGESFLALLMYVDDIVIVDNDYRTIEKLKTFLDSQFKLKDLGQFKYFLGCKPASMP 538
Query: 170 IYSAQSLSNTDGDLIPEPTQYQRLVGHLLYLVISPL 277
+ + +LS DG+L+ +P Y+RL+G LLYL I+ L
Sbjct: 539 MEAKINLSQDDGELLEDPNLYRRLIGKLLYLTITRL 574
Score = 31.2 bits (69), Expect(2) = 1e-15
Identities = 11/45 (24%), Positives = 28/45 (62%)
Frame = +1
Query: 271 SITKPDITFATHTLSQFMSSQWASHMDAGHKLLWYFKRNSDQDIF 405
+IT+ D+ ++ + L Q++++ ++H+ H++L Y K Q ++
Sbjct: 570 TITRLDLAYSVNCLGQYLANPRSTHLQGVHRILQYIKGIVGQGLY 614
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana]
Length = 1633
Score = 55.5 bits (132), Expect(2) = 1e-14
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +1
Query: 274 ITKPDITFATHTLSQFMSSQWASHMDAGHKLLWYFKRNSDQD 399
IT+PDITFA HTLSQF+S+ HM A HK+L Y K N QD
Sbjct: 1243 ITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQD 1284
Score = 48.9 bits (115), Expect(2) = 1e-14
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 33/123 (26%)
Frame = +2
Query: 2 FSKGSGSTYVPLLVHADHIIVTGASTSYVERTKVHISSQFKIKDLG-------------- 139
F K S ++ + +LV+ D +++ +S VE K + S+FKIKDLG
Sbjct: 1122 FVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSS 1181
Query: 140 -------------------VLATKPISQPIYSAQSLSNTDGDLIPEPTQYQRLVGHLLYL 262
+ KP S P+ L+ G L+P T Y+ LVG LLYL
Sbjct: 1182 EGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYL 1241
Query: 263 VIS 271
I+
Sbjct: 1242 CIT 1244
>ref|XP_004149623.1| PREDICTED: uncharacterized protein LOC101211618 [Cucumis sativus]
Length = 2085
Score = 60.8 bits (146), Expect(2) = 1e-14
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 35/125 (28%)
Frame = +2
Query: 2 FSKGSGSTYVPLLVHADHIIVTGASTSYVERTKVHISSQFKIKDL--------------- 136
F+KG+GST+V LLV+ D I++TG S S + K + + FK+KDL
Sbjct: 968 FTKGNGSTFVALLVYVDDILLTGPSPSNINSVKDSLKAHFKLKDLGQARYFLGLELSRSE 1027
Query: 137 ------------------GVLATKPISQPIYSAQSLSNTDGDLIPE--PTQYQRLVGHLL 256
G L +KP+ P+ L ++G+ + E T Y+RL+G L+
Sbjct: 1028 RGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKSEGEQLTEEDATCYRRLIGRLI 1087
Query: 257 YLVIS 271
YL IS
Sbjct: 1088 YLQIS 1092
Score = 43.1 bits (100), Expect(2) = 1e-14
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 274 ITKPDITFATHTLSQFMSSQWASHMDAGHKLLWYFKRNSDQDI 402
I++PDI F+ H LSQF+ H+DA H LL Y K + Q +
Sbjct: 1091 ISRPDICFSVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQGV 1133
>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|7267797|emb|CAB81200.1| putative retrotransposon
polyprotein [Arabidopsis thaliana]
Length = 1203
Score = 53.5 bits (127), Expect(2) = 4e-14
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 274 ITKPDITFATHTLSQFMSSQWASHMDAGHKLLWYFKRNSDQDI 402
IT+PDITFA HTLSQF+S+ HM A HK+L Y K N Q +
Sbjct: 829 ITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGL 871
Score = 48.9 bits (115), Expect(2) = 4e-14
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 33/123 (26%)
Frame = +2
Query: 2 FSKGSGSTYVPLLVHADHIIVTGASTSYVERTKVHISSQFKIKDLG-------------- 139
F K S ++ + +LV+ D +++ +S VE K + S+FKIKDLG
Sbjct: 708 FVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSS 767
Query: 140 -------------------VLATKPISQPIYSAQSLSNTDGDLIPEPTQYQRLVGHLLYL 262
+ KP S P+ L+ G L+P T Y+ LVG LLYL
Sbjct: 768 EGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYL 827
Query: 263 VIS 271
I+
Sbjct: 828 CIT 830