BLASTX nr result

ID: Atractylodes21_contig00041351 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00041351
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB47665.1| retrotransposon protein, putative, unclassified, ...    45   5e-09
emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]    45   2e-08
emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]    45   2e-08
emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera]    45   2e-08
emb|CAN67240.1| hypothetical protein VITISV_037460 [Vitis vinifera]    45   2e-08

>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group] gi|78708691|gb|ABB47666.1|
           retrotransposon protein, putative, unclassified,
           expressed [Oryza sativa Japonica Group]
          Length = 1682

 Score = 45.1 bits (105), Expect(2) = 5e-09
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161 YIDFSRIIHSQFSKQIKVLRTDNAMKYKA-SFLQFLCQQGTVPQYFGLGTTQQN 3
           Y  F+++IH+QFS  I++ R+D+  +Y + +F +FL  QGT+PQ    G   QN
Sbjct: 429 YQSFAQMIHTQFSSAIRIFRSDSGGEYMSNAFREFLVSQGTLPQLSCPGAHAQN 482



 Score = 40.0 bits (92), Expect(2) = 5e-09
 Identities = 16/32 (50%), Positives = 27/32 (84%)
 Frame = -2

Query: 252 GGASYYVIFLDDHTRFT*IFLIKNISKLLQIH 157
           GG +YYVIF+DD++R+T I+ +K+ S+L+ I+
Sbjct: 398 GGHNYYVIFVDDYSRYTWIYFMKHRSQLISIY 429


>emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]
          Length = 2471

 Score = 45.1 bits (105), Expect(2) = 2e-08
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161  YIDFSRIIHSQFSKQIKVLRTDNAMKY-KASFLQFLCQQGTVPQYFGLGTTQQN 3
            Y +F+++I +QFSK+IK  R+DNA++Y + +F   L   GTV      GT+QQN
Sbjct: 860  YNNFAKMIETQFSKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQN 913



 Score = 38.5 bits (88), Expect(2) = 2e-08
 Identities = 15/34 (44%), Positives = 29/34 (85%)
 Frame = -2

Query: 258 TMGGASYYVIFLDDHTRFT*IFLIKNISKLLQIH 157
           ++GG+ Y+VIF+DD++R++ IF +K+ S++L I+
Sbjct: 827 SIGGSRYFVIFIDDYSRYSWIFPMKSRSEILSIY 860


>emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]
          Length = 1287

 Score = 45.4 bits (106), Expect(2) = 2e-08
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161 YIDFSRIIHSQFSKQIKVLRTDNAMKY-KASFLQFLCQQGTVPQYFGLGTTQQN 3
           Y +F+++I +QFSK+IK  R+DNA++Y + +F   L   GTV      GT+QQN
Sbjct: 553 YSNFAKMIETQFSKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQN 606



 Score = 38.1 bits (87), Expect(2) = 2e-08
 Identities = 14/34 (41%), Positives = 29/34 (85%)
 Frame = -2

Query: 258 TMGGASYYVIFLDDHTRFT*IFLIKNISKLLQIH 157
           ++GG+ Y+V+F+DD++R++ IF +K+ S++L I+
Sbjct: 520 SIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSIY 553


>emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera]
          Length = 1013

 Score = 45.4 bits (106), Expect(2) = 2e-08
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161 YIDFSRIIHSQFSKQIKVLRTDNAMKY-KASFLQFLCQQGTVPQYFGLGTTQQN 3
           Y +F+++I +QFSK+IK  R+DNA++Y + +F   L   GTV      GT+QQN
Sbjct: 277 YSNFAKMIETQFSKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQN 330



 Score = 38.1 bits (87), Expect(2) = 2e-08
 Identities = 14/34 (41%), Positives = 28/34 (82%)
 Frame = -2

Query: 258 TMGGASYYVIFLDDHTRFT*IFLIKNISKLLQIH 157
           ++GG+ Y+V+F+DD++R+  IF +K+ S++L I+
Sbjct: 244 SIGGSRYFVVFIDDYSRYIWIFPMKSCSEILSIY 277


>emb|CAN67240.1| hypothetical protein VITISV_037460 [Vitis vinifera]
          Length = 1174

 Score = 45.1 bits (105), Expect(2) = 2e-08
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 161 YIDFSRIIHSQFSKQIKVLRTDNAMKY-KASFLQFLCQQGTVPQYFGLGTTQQN 3
           Y +F++++ +QFSK+IK  R+DNA++Y + +F   L   GTV      GT+QQN
Sbjct: 405 YSNFAKMVETQFSKRIKTFRSDNALEYTQYAFQALLHSYGTVHHLTCPGTSQQN 458



 Score = 38.1 bits (87), Expect(2) = 2e-08
 Identities = 15/34 (44%), Positives = 29/34 (85%)
 Frame = -2

Query: 258 TMGGASYYVIFLDDHTRFT*IFLIKNISKLLQIH 157
           ++GG+ Y+VIF+DD++R++ IF +K+ S++L I+
Sbjct: 372 SIGGSRYFVIFIDDYSRYSWIFPMKSRSEILPIY 405


Top