BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00039980
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     172   3e-41
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   172   3e-41
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   169   2e-40
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   167   1e-39
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   166   2e-39

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  172 bits (436), Expect = 3e-41
 Identities = 82/141 (58%), Positives = 103/141 (73%), Gaps = 2/141 (1%)
 Frame = -3

Query: 417 SLEFCKDCVFGKQSRVTFG--EGKHITGGILDYVHTDVWGPSGLNLLGGGQLFVTFIDDF 244
           +LEFC+ C  GKQ+RV+F     ++ + G+LDY+HTDVWGPS     GG + FV+FIDDF
Sbjct: 423 ALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDF 482

Query: 243 SRKV*AFIMKHKSEVFVKFKQWLALVENQTSQRLKVLRSDNGGEYKSGEFIEFCKKKGIQ 64
           SRKV  F MK K+EVF KFK+W A V NQT +++K LRSDNGGEY+  +F++ CK +GI 
Sbjct: 483 SRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGIT 542

Query: 63  RHFTTPYDPQSNGVAERMNCT 1
           RHFT    PQ NGVAERMN T
Sbjct: 543 RHFTVKKSPQQNGVAERMNRT 563


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  172 bits (436), Expect = 3e-41
 Identities = 78/140 (55%), Positives = 98/140 (70%)
 Frame = -3

Query: 420 GSLEFCKDCVFGKQSRVTFGEGKHITGGILDYVHTDVWGPSGLNLLGGGQLFVTFIDDFS 241
           G ++FC+ CVFGK  RV F    H T GILDYVHTD+WGPS    LGG +  +T IDD+S
Sbjct: 456 GKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYS 515

Query: 240 RKV*AFIMKHKSEVFVKFKQWLALVENQTSQRLKVLRSDNGGEYKSGEFIEFCKKKGIQR 61
           RKV  + +KHK + F  FK+W   +E QT + +KVLR+DNGGE+ S  F ++C+K+GI R
Sbjct: 516 RKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVR 575

Query: 60  HFTTPYDPQSNGVAERMNCT 1
           H T PY PQ NGVAERMN T
Sbjct: 576 HHTIPYTPQQNGVAERMNRT 595


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  169 bits (428), Expect = 2e-40
 Identities = 76/140 (54%), Positives = 98/140 (70%)
 Frame = -3

Query: 420 GSLEFCKDCVFGKQSRVTFGEGKHITGGILDYVHTDVWGPSGLNLLGGGQLFVTFIDDFS 241
           G+++FC+ CVFGK  RV F    H T GILDYVH D+WGPS    LGG +  +T IDD+S
Sbjct: 456 GNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 515

Query: 240 RKV*AFIMKHKSEVFVKFKQWLALVENQTSQRLKVLRSDNGGEYKSGEFIEFCKKKGIQR 61
           RKV  + +KHK + F  FK+W  ++E QT + +KVLR+DN GE+ S  F ++C+K+GI R
Sbjct: 516 RKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVR 575

Query: 60  HFTTPYDPQSNGVAERMNCT 1
           H T PY PQ NGVAERMN T
Sbjct: 576 HHTIPYTPQQNGVAERMNRT 595


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score =  167 bits (422), Expect = 1e-39
 Identities = 75/140 (53%), Positives = 98/140 (70%)
 Frame = -3

Query: 420 GSLEFCKDCVFGKQSRVTFGEGKHITGGILDYVHTDVWGPSGLNLLGGGQLFVTFIDDFS 241
           G+++FC+ CVFGK  RV F    H + GILDYVH D+WGPS    LGG    +T IDD+S
Sbjct: 396 GNMKFCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYS 455

Query: 240 RKV*AFIMKHKSEVFVKFKQWLALVENQTSQRLKVLRSDNGGEYKSGEFIEFCKKKGIQR 61
           RKV  + +KHK + F  FK+W  ++E QT + +KVLR+D+GGE+ S  F ++C+K+GI R
Sbjct: 456 RKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVR 515

Query: 60  HFTTPYDPQSNGVAERMNCT 1
           H T PY PQ NGVAERMN T
Sbjct: 516 HHTIPYTPQQNGVAERMNRT 535


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score =  166 bits (420), Expect = 2e-39
 Identities = 75/140 (53%), Positives = 96/140 (68%)
 Frame = -3

Query: 420 GSLEFCKDCVFGKQSRVTFGEGKHITGGILDYVHTDVWGPSGLNLLGGGQLFVTFIDDFS 241
           G+++FC+ CVFGK  RV F    H T GILDYVH D+WGPS    LGG    +T IDD+S
Sbjct: 453 GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYS 512

Query: 240 RKV*AFIMKHKSEVFVKFKQWLALVENQTSQRLKVLRSDNGGEYKSGEFIEFCKKKGIQR 61
           RKV  + +KHK + F  FK+W  ++E Q  + +KVLR+DNGGE+ S  F ++C+K+GI R
Sbjct: 513 RKVWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRKEGIGR 572

Query: 60  HFTTPYDPQSNGVAERMNCT 1
           H T PY PQ N VAERMN T
Sbjct: 573 HHTIPYTPQQNSVAERMNRT 592