BLASTX nr result

ID: Atractylodes21_contig00039622 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00039622
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32804.3| unnamed protein product [Vitis vinifera]              185   4e-45
ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a...   184   8e-45
ref|XP_002308876.1| chromatin remodeling complex subunit [Populu...   172   2e-41
ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223...   172   3e-41
ref|XP_003559895.1| PREDICTED: putative SWI/SNF-related matrix-a...   171   4e-41

>emb|CBI32804.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  185 bits (469), Expect = 4e-45
 Identities = 90/118 (76%), Positives = 98/118 (83%)
 Frame = -2

Query: 354 KRVSKMTLIVCPPSVFSTWITQLTEHTKQGRLKAYMYYAERTQDVSELQKYDIVLTTYST 175
           K +SK TLIVCPPSVFSTW+TQL EHT   RLK YMYY  RTQ+  ELQKYDIVLTTYST
Sbjct: 242 KAISKTTLIVCPPSVFSTWVTQLLEHTTPKRLKVYMYYGNRTQEAEELQKYDIVLTTYST 301

Query: 174 LGSELGNSDAPVKKIEWWRVILDEAHVIKNDRAKQSCAVTSLNAKRRWVVTGTPIQNG 1
           L +E   S +PVKKIEWWRVILDEAH+IKN  A+QS AVT+L AKRRWVVTGTPIQNG
Sbjct: 302 LATEEAWSGSPVKKIEWWRVILDEAHMIKNVNAQQSQAVTNLRAKRRWVVTGTPIQNG 359


>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1-like [Vitis vinifera]
          Length = 874

 Score =  184 bits (466), Expect = 8e-45
 Identities = 90/116 (77%), Positives = 97/116 (83%)
 Frame = -2

Query: 348 VSKMTLIVCPPSVFSTWITQLTEHTKQGRLKAYMYYAERTQDVSELQKYDIVLTTYSTLG 169
           VSK TLIVCPPSVFSTW+TQL EHT   RLK YMYY  RTQ+  ELQKYDIVLTTYSTL 
Sbjct: 352 VSKTTLIVCPPSVFSTWVTQLLEHTTPKRLKVYMYYGNRTQEAEELQKYDIVLTTYSTLA 411

Query: 168 SELGNSDAPVKKIEWWRVILDEAHVIKNDRAKQSCAVTSLNAKRRWVVTGTPIQNG 1
           +E   S +PVKKIEWWRVILDEAH+IKN  A+QS AVT+L AKRRWVVTGTPIQNG
Sbjct: 412 TEEAWSGSPVKKIEWWRVILDEAHMIKNVNAQQSQAVTNLRAKRRWVVTGTPIQNG 467


>ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222854852|gb|EEE92399.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 799

 Score =  172 bits (437), Expect = 2e-41
 Identities = 84/112 (75%), Positives = 96/112 (85%)
 Frame = -2

Query: 336 TLIVCPPSVFSTWITQLTEHTKQGRLKAYMYYAERTQDVSELQKYDIVLTTYSTLGSELG 157
           TLIVCPP+VFSTWITQL EHT++G L  YMYY ERT++V EL+K+DIVLTTYSTL +E  
Sbjct: 281 TLIVCPPAVFSTWITQLEEHTQRGSLGVYMYYGERTREVEELKKHDIVLTTYSTLAAEDP 340

Query: 156 NSDAPVKKIEWWRVILDEAHVIKNDRAKQSCAVTSLNAKRRWVVTGTPIQNG 1
             D+PVKKI+W RVILDEAHVIKN  ++QS AVT LNAKRRWVVTGTPIQNG
Sbjct: 341 WEDSPVKKIDWCRVILDEAHVIKNANSQQSRAVTKLNAKRRWVVTGTPIQNG 392


>ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223523786|gb|EEF27189.1|
           helicase, putative [Ricinus communis]
          Length = 518

 Score =  172 bits (435), Expect = 3e-41
 Identities = 83/115 (72%), Positives = 95/115 (82%)
 Frame = -2

Query: 345 SKMTLIVCPPSVFSTWITQLTEHTKQGRLKAYMYYAERTQDVSELQKYDIVLTTYSTLGS 166
           +K TLIVCPP VFSTWITQL +HT  G LK Y+Y+ ERT++  EL++ DIVLTTYSTL S
Sbjct: 350 AKPTLIVCPPVVFSTWITQLEDHTVGGSLKVYIYHGERTKEAEELKRQDIVLTTYSTLAS 409

Query: 165 ELGNSDAPVKKIEWWRVILDEAHVIKNDRAKQSCAVTSLNAKRRWVVTGTPIQNG 1
           E    D+PVK +EWWRVILDEAHVIKN  A+QS AVT+LNAKRRWVVTGTPIQNG
Sbjct: 410 EDSWEDSPVKMVEWWRVILDEAHVIKNANAQQSRAVTNLNAKRRWVVTGTPIQNG 464


>ref|XP_003559895.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1-like [Brachypodium distachyon]
          Length = 828

 Score =  171 bits (434), Expect = 4e-41
 Identities = 82/126 (65%), Positives = 99/126 (78%)
 Frame = -2

Query: 381 SKKPKTDVDKRVSKMTLIVCPPSVFSTWITQLTEHTKQGRLKAYMYYAERTQDVSELQKY 202
           +K+ K D   + S+ TL+VCPPSVFS+W+TQL EHT+ G LK YMY+ ERT+D  EL KY
Sbjct: 280 TKRRKVDDAGQESRTTLVVCPPSVFSSWVTQLEEHTEAGSLKVYMYHGERTKDKKELLKY 339

Query: 201 DIVLTTYSTLGSELGNSDAPVKKIEWWRVILDEAHVIKNDRAKQSCAVTSLNAKRRWVVT 22
           DIV+TTYS LG E G   +PV  IEW+RVILDEAHVIKN  A+Q+ AV +LNA+RRWVVT
Sbjct: 340 DIVITTYSILGIEFGQEGSPVNDIEWFRVILDEAHVIKNSAARQTKAVIALNAQRRWVVT 399

Query: 21  GTPIQN 4
           GTPIQN
Sbjct: 400 GTPIQN 405


Top