BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00039243
         (290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]               88   6e-16
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    85   7e-15
gb|AAF63108.1|AC006423_9 Hypothetical protein [Arabidopsis thali...    82   5e-14
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...    80   2e-13
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...    77   1e-12

>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
          Length = 826

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
 Frame = +2

Query: 2   DRRTHQTLMRCDSSGDLYPATPSKRTPLAFVSS-ASLWHQRLGHPGGRVLQSLISRNFIA 178
           D +T   + RC+SSGDLYP  P   +  A +++ ASLWH+RLGH G   L  L+S + I+
Sbjct: 558 DLQTRNVIARCNSSGDLYPFFPPATSATALLAAPASLWHRRLGHLGREALSQLVSSSAIS 617

Query: 179 CNNRLTSTNCQACQLGKHVRLPFTIFESVVNSSFELV 289
           CN       C ACQLG+H RLPF+   S   ++F+L+
Sbjct: 618 CNKDDDYHLCHACQLGRHTRLPFSTSTSRATNNFDLI 654


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
 Frame = +2

Query: 2   DRRTHQTLMRCDSSGDLYPATPSK-----RTPLAFVSSASLWHQRLGHPGGRVLQSLISR 166
           D +T   L+RCDSSG LY  TPS          A  S + +WH+RLGHP   +L  L+S 
Sbjct: 456 DLKTRNKLLRCDSSGPLYSVTPSSYPSSHHALAATTSDSFIWHRRLGHPSSTLLSHLLSS 515

Query: 167 NFIACNNRLTSTNCQACQLGKHVRLPFTIFESVVNSSFELV 289
             I+      ++ CQACQLGKH RLPF    ++ +S FE+V
Sbjct: 516 LSISVPKTDLTSLCQACQLGKHTRLPFFNSNTIASSLFEIV 556


>gb|AAF63108.1|AC006423_9 Hypothetical protein [Arabidopsis thaliana]
          Length = 474

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
 Frame = +2

Query: 2   DRRTHQTLMRCDSSGDLYPATPSKRTPLAFVS-----SASLWHQRLGHPGGRVLQSLISR 166
           D RT +TL+R DSSGDLYP  P+     A  S     S+ +WH+RL HP   VL++LIS 
Sbjct: 377 DLRTKRTLLRNDSSGDLYPVFPAFNKTSAPASTFLAQSSDIWHRRLPHPSNDVLKTLISY 436

Query: 167 NFIACNNRLTSTNCQACQLGKHVRLPF 247
           ++   N +  +  C ACQ+GKHV+LPF
Sbjct: 437 SYFHPNKKTLTLTCNACQIGKHVKLPF 463


>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
 Frame = +2

Query: 8   RTHQTLMRCDSSGDLYP---ATPSKRTPLAFVSSASLWHQRLGHPGGRVLQSLISRNFIA 178
           RT + ++RC+S GDLY    A P+         S++LWH+RLGHP    +Q+L     + 
Sbjct: 454 RTRRVILRCNSRGDLYTLPIAAPAIAAHSFLAQSSTLWHRRLGHPSSAAIQTLHKLAILP 513

Query: 179 CNNRLTSTNCQACQLGKHVRLPFTIFESVVNSSFELV 289
           C  ++  + C AC+LGKH RLPF+  +S  +S FELV
Sbjct: 514 CT-KIDHSLCHACKLGKHTRLPFSRSQSSTSSPFELV 549


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709048|gb|ABF96843.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 594

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
 Frame = +2

Query: 2   DRRTHQTLMRCDSSGDLYP---ATPSKRTPLAFVSSASLWHQRLGHPGGRVLQSLISRNF 172
           D +T + ++RC+S G+LY    A PS        +S++LWH+RLGHPG   + +L   + 
Sbjct: 444 DPQTRRVILRCNSHGELYTLPAAAPSIAAHYNLATSSTLWHRRLGHPGPTAVTTLQHLSA 503

Query: 173 IACNNRLTSTNCQACQLGKHVRLPFTIFESVVNSSFELV 289
           I   ++  ++ C ACQLGKH RLPF    S  +S FELV
Sbjct: 504 IP-RSKTNNSLCHACQLGKHTRLPFNKSTSSTSSPFELV 541