BLASTX nr result

ID: Atractylodes21_contig00038064 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00038064
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520518.1| protein with unknown function [Ricinus commu...    77   2e-12
ref|XP_003543528.1| PREDICTED: transcription initiation factor I...    72   5e-11
ref|XP_003543527.1| PREDICTED: transcription initiation factor I...    72   5e-11
ref|XP_003547006.1| PREDICTED: transcription initiation factor I...    68   7e-10
ref|XP_003568681.1| PREDICTED: uncharacterized protein LOC100827...    64   1e-08

>ref|XP_002520518.1| protein with unknown function [Ricinus communis]
           gi|223540360|gb|EEF41931.1| protein with unknown
           function [Ricinus communis]
          Length = 383

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
 Frame = -3

Query: 173 VDNS--YNIPTGGTPITPSDYSSVNENGASDGKAGRPSPYMQPPSLWLNQRPPLDVNVA 3
           VDNS  YNIPTG T   P+  S  +  G+++ KAGRPSPYMQPPS W+NQRPPLDVN+A
Sbjct: 114 VDNSSMYNIPTGPTSEYPTPVS--DSGGSTEAKAGRPSPYMQPPSPWINQRPPLDVNIA 170


>ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 2 [Glycine max]
          Length = 384

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 40/59 (67%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
 Frame = -3

Query: 170 DNS-YNIPTGGTPITPSDY-SSVNENGAS-DGKAGRPSPYMQPPSLWLNQRPPLDVNVA 3
           DNS YNIPTG     PSDY SS N+ G + DGK  RP+PYMQ PS W+NQRPPLDVNVA
Sbjct: 114 DNSTYNIPTG-----PSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVA 167


>ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 1 [Glycine max]
          Length = 391

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 40/59 (67%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
 Frame = -3

Query: 170 DNS-YNIPTGGTPITPSDY-SSVNENGAS-DGKAGRPSPYMQPPSLWLNQRPPLDVNVA 3
           DNS YNIPTG     PSDY SS N+ G + DGK  RP+PYMQ PS W+NQRPPLDVNVA
Sbjct: 114 DNSTYNIPTG-----PSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVA 167


>ref|XP_003547006.1| PREDICTED: transcription initiation factor IIA large subunit-like
           [Glycine max]
          Length = 390

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
 Frame = -3

Query: 170 DNS-YNIPTGGTPITPSDY-SSVNENGAS-DGKAGRPSPYMQPPSLWLNQRPPLDVNVA 3
           DNS YNIPTG      +DY SS N+ G + DGK  RP+PYMQP S W+NQRPPLDVNVA
Sbjct: 114 DNSTYNIPTGA-----NDYPSSGNDTGGNADGKGARPAPYMQPSSPWMNQRPPLDVNVA 167


>ref|XP_003568681.1| PREDICTED: uncharacterized protein LOC100827776 [Brachypodium
           distachyon]
          Length = 400

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
 Frame = -3

Query: 161 YNIPTGGTPITPSDYSSVNENGA---SDGKAGRPSPYMQPPSLWLNQRP-PLDVNVA 3
           YNIPTG +   PS  S +    A   SD K GRPSPYMQPPS W+NQRP  +DVNVA
Sbjct: 125 YNIPTGPSDYAPSPISDMRNGMAMNGSDPKTGRPSPYMQPPSPWMNQRPLGVDVNVA 181


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