BLASTX nr result

ID: Atractylodes21_contig00036312 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00036312
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...   120   1e-25
emb|CAJ58640.1| putative reverse transcriptase [Cucumis melo]         112   4e-23
emb|CAJ58631.1| putative reverse transcriptase [Cucumis melo] gi...   112   4e-23
emb|CAJ58639.1| putative reverse transcriptase [Cucumis melo]         111   7e-23
emb|CAJ58635.1| putative reverse transcriptase [Cucumis melo]         110   1e-22

>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score =  120 bits (300), Expect = 1e-25
 Identities = 56/79 (70%), Positives = 65/79 (82%)
 Frame = +3

Query: 6    DREKVRAMLDWSLPKNLRELQGFLGLTGYYRKFVARYVTITAPLTDQLRKDSFQWGEQAT 185
            D EKV+A+L+W +PKNLREL+GFLGLTGYYRKFVA Y  I  PLT+QL+KD+F+W   AT
Sbjct: 902  DTEKVKAVLEWEVPKNLRELRGFLGLTGYYRKFVANYAHIARPLTEQLKKDNFKWSATAT 961

Query: 186  RAFTHLKQAMVSAPVLAMP 242
             AF  LK AMVSAPVLAMP
Sbjct: 962  EAFKQLKSAMVSAPVLAMP 980


>emb|CAJ58640.1| putative reverse transcriptase [Cucumis melo]
          Length = 135

 Score =  112 bits (279), Expect = 4e-23
 Identities = 48/79 (60%), Positives = 67/79 (84%)
 Frame = +3

Query: 6   DREKVRAMLDWSLPKNLRELQGFLGLTGYYRKFVARYVTITAPLTDQLRKDSFQWGEQAT 185
           D+EK++A+++W +PKN+REL+GFLGLTGYYR+FVA Y  I APLT   +K++F+W E+AT
Sbjct: 53  DQEKIKAVIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIAAPLTKLTKKNNFRWSEEAT 112

Query: 186 RAFTHLKQAMVSAPVLAMP 242
           +AF  LK+AMV+ PVLA+P
Sbjct: 113 KAFEQLKRAMVTLPVLALP 131


>emb|CAJ58631.1| putative reverse transcriptase [Cucumis melo]
           gi|164510330|emb|CAJ58633.1| putative reverse
           transcriptase [Cucumis melo]
           gi|164510332|emb|CAJ58634.1| putative reverse
           transcriptase [Cucumis melo]
          Length = 135

 Score =  112 bits (279), Expect = 4e-23
 Identities = 48/79 (60%), Positives = 66/79 (83%)
 Frame = +3

Query: 6   DREKVRAMLDWSLPKNLRELQGFLGLTGYYRKFVARYVTITAPLTDQLRKDSFQWGEQAT 185
           D+EK++AM++W +PKN+REL+GFLGLTGYYR+FVA Y  I  PLT   +K++F+W E+AT
Sbjct: 53  DQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNNFRWSEEAT 112

Query: 186 RAFTHLKQAMVSAPVLAMP 242
           +AF  LK+AMV+ PVLA+P
Sbjct: 113 KAFEQLKRAMVTLPVLALP 131


>emb|CAJ58639.1| putative reverse transcriptase [Cucumis melo]
          Length = 134

 Score =  111 bits (277), Expect = 7e-23
 Identities = 47/79 (59%), Positives = 66/79 (83%)
 Frame = +3

Query: 6   DREKVRAMLDWSLPKNLRELQGFLGLTGYYRKFVARYVTITAPLTDQLRKDSFQWGEQAT 185
           D+EK++AM++W +PKN+REL+GFLGLTGYYR+FVA Y  I  PLT   +K++F+W E+AT
Sbjct: 53  DQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNNFRWSEEAT 112

Query: 186 RAFTHLKQAMVSAPVLAMP 242
           +AF  +K+AMV+ PVLA+P
Sbjct: 113 KAFEQIKRAMVTLPVLALP 131


>emb|CAJ58635.1| putative reverse transcriptase [Cucumis melo]
          Length = 135

 Score =  110 bits (275), Expect = 1e-22
 Identities = 47/79 (59%), Positives = 65/79 (82%)
 Frame = +3

Query: 6   DREKVRAMLDWSLPKNLRELQGFLGLTGYYRKFVARYVTITAPLTDQLRKDSFQWGEQAT 185
           D+EK++ M++W +PKN+REL+GFLGLTGYYR+FVA Y  I  PLT   +K++F+W E+AT
Sbjct: 53  DQEKIKVMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNNFRWSEEAT 112

Query: 186 RAFTHLKQAMVSAPVLAMP 242
           +AF  LK+AMV+ PVLA+P
Sbjct: 113 KAFEQLKRAMVTLPVLALP 131


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