BLASTX nr result

ID: Atractylodes21_contig00036258 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00036258
         (210 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN59941.1| hypothetical protein VITISV_017227 [Vitis vinifera]    85   7e-15
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]    84   1e-14
gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr...    84   2e-14
gb|AAX95627.1| Reverse transcriptase (RNA-dependent DNA polymera...    84   2e-14
gb|AAK53852.1|AC016781_6 Putative retroelement [Oryza sativa Jap...    84   2e-14

>emb|CAN59941.1| hypothetical protein VITISV_017227 [Vitis vinifera]
          Length = 479

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 38/66 (57%), Positives = 51/66 (77%)
 Frame = +3

Query: 3   HWKHAMNEEYHTLLKNDTQILVPP*PHMNIVQNIWVFRTKHNSDGSIQRYKARLVAKSFQ 182
           +W  AM EEY  L++N+T  LVP  P MN++ + W+FR K+NSDG+IQRYKARLVAK FQ
Sbjct: 154 NWHTAMVEEYQALVQNNTWTLVPFHPSMNVIXSKWIFRVKYNSDGTIQRYKARLVAKGFQ 213

Query: 183 QHHGID 200
           Q+ G++
Sbjct: 214 QYAGVE 219


>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 37/66 (56%), Positives = 50/66 (75%)
 Frame = +3

Query: 3   HWKHAMNEEYHTLLKNDTQILVPP*PHMNIVQNIWVFRTKHNSDGSIQRYKARLVAKSFQ 182
           +W   M EEY  L++N+T  LVP  P MN++ + W+FR K+NSDG+IQRYKARLVAK FQ
Sbjct: 503 NWHTTMVEEYQALVRNNTWTLVPFHPSMNVIDSKWIFRVKYNSDGTIQRYKARLVAKGFQ 562

Query: 183 QHHGID 200
           Q+ G++
Sbjct: 563 QYAGVE 568


>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
            polyprotein from Arabidopsis arenosa [Arabidopsis
            thaliana]
          Length = 1194

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 47/66 (71%)
 Frame = +3

Query: 3    HWKHAMNEEYHTLLKNDTQILVPP*PHMNIVQNIWVFRTKHNSDGSIQRYKARLVAKSFQ 182
            +W++AM+EE++  L+N T  LVPP PH N V   W+F  K+N DGSI RYKAR +AK F 
Sbjct: 910  NWRNAMSEEFNAGLRNSTYDLVPPKPHQNFVGTRWIFTIKYNPDGSINRYKARFLAKGFH 969

Query: 183  QHHGID 200
            Q HG+D
Sbjct: 970  QQHGLD 975


>gb|AAX95627.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
           [Oryza sativa Japonica Group]
           gi|108709340|gb|ABF97135.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 330

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +3

Query: 3   HWKHAMNEEYHTLLKNDTQILVPP*PHMNIVQNIWVFRTKHNSDGSIQRYKARLVAKSFQ 182
           HWK AM+ EYH ++KN T  LVPP   +N++   WV++ K  +DGS+ RYKARLVAK F+
Sbjct: 56  HWKEAMDSEYHAVMKNKTWHLVPPKRGLNVIDCKWVYKIKRKADGSLDRYKARLVAKGFK 115

Query: 183 QHHGID 200
           Q +GID
Sbjct: 116 QRYGID 121


>gb|AAK53852.1|AC016781_6 Putative retroelement [Oryza sativa Japonica Group]
          Length = 920

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +3

Query: 3   HWKHAMNEEYHTLLKNDTQILVPP*PHMNIVQNIWVFRTKHNSDGSIQRYKARLVAKSFQ 182
           HWK AM+ EYH ++KN T  LVPP   +N++   WV++ K  +DGS+ RYKARLVAK F+
Sbjct: 617 HWKEAMDSEYHAVMKNKTWHLVPPKRGLNVIDCKWVYKIKRKADGSLDRYKARLVAKGFK 676

Query: 183 QHHGID 200
           Q +GID
Sbjct: 677 QRYGID 682


Top