BLASTX nr result

ID: Atractylodes21_contig00035767 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00035767
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
ref|XP_002307350.1| predicted protein [Populus trichocarpa] gi|2...    85   5e-15
ref|XP_002513996.1| pentatricopeptide repeat-containing protein,...    83   3e-14

>ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Vitis vinifera]
          Length = 475

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 42/93 (45%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +2

Query: 2   AMKESVK-LKGCDWRPSSTIVESISEYFEESGNLEEAVRYLEVLREFDLASLSIYRSLIR 178
           AMK+    LK CDWRP+  +V +I+ Y EE GN+ +  +Y++V+ +  +A L +Y+SL+R
Sbjct: 380 AMKKGFSMLKHCDWRPNHGLVTAIARYLEEHGNVNDLNQYVKVIHQLGVAKLPLYKSLLR 439

Query: 179 MHVAKQKPIDDILKLMEDDNVDIDSETMGLVHA 277
           MH+  Q+P+ DILK+ME D +++D ET  LV A
Sbjct: 440 MHLLFQRPVFDILKMMEKDEIEMDDETSALVQA 472


>ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 530

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/94 (42%), Positives = 65/94 (69%)
 Frame = +2

Query: 23  LKGCDWRPSSTIVESISEYFEESGNLEEAVRYLEVLREFDLASLSIYRSLIRMHVAKQKP 202
           +K C WRP   +V +I+EY E+ GNL+ A +Y+  LR F L SLS+Y+ L+RMH++  KP
Sbjct: 434 MKDCHWRPPHGLVLAIAEYLEKDGNLKYANKYITDLRNFGLFSLSLYKILLRMHLSANKP 493

Query: 203 IDDILKLMEDDNVDIDSETMGLVHASQA*VVAKM 304
              ILK+M++D +++D+ET+ ++ A    V A++
Sbjct: 494 PFHILKMMDEDKIEMDNETLSILKAFTGCVQAEV 527


>ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 496

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 39/85 (45%), Positives = 59/85 (69%)
 Frame = +2

Query: 23  LKGCDWRPSSTIVESISEYFEESGNLEEAVRYLEVLREFDLASLSIYRSLIRMHVAKQKP 202
           +K C WRP   IV +I+EY E+ GNLE A +Y+  +    L SLS+Y+ L+RMH++  KP
Sbjct: 409 MKDCHWRPPHGIVLAIAEYLEKDGNLEYADKYITDIHNLGLVSLSLYKVLLRMHLSANKP 468

Query: 203 IDDILKLMEDDNVDIDSETMGLVHA 277
              ILK+M++D V+ID+ET+ ++ A
Sbjct: 469 PFHILKMMDEDKVEIDNETLSILKA 493


>ref|XP_002307350.1| predicted protein [Populus trichocarpa] gi|222856799|gb|EEE94346.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
 Frame = +2

Query: 2   AMKES---VKLKGCDWRPSSTIVESISEYFEESGNLEEAVRYLEVLREFDLASLSIYRSL 172
           AMK+    +K++ CDWRPS +I+ +I+E+FE+ GN E+A  Y++ +    +A+L +Y+  
Sbjct: 415 AMKKGFSVLKVERCDWRPSHSILMAIAEHFEKHGNFEDANHYIKAVHGLGVATLPLYKLF 474

Query: 173 IRMHVAKQKPIDDILKLMEDDNVDIDSETMGLV 271
           +RM++  Q+P  DILK+ME D +++D ET  LV
Sbjct: 475 LRMYLNAQRPAWDILKMMEKDRIELDDETSALV 507


>ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547082|gb|EEF48579.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 496

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 39/93 (41%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
 Frame = +2

Query: 2   AMKESVK-LKGCDWRPSSTIVESISEYFEESGNLEEAVRYLEVLREFDLASLSIYRSLIR 178
           AM +++  L+ C WRPS  I+ SI+E+ E + N E+A  +++V+    +ASL +Y+ L+R
Sbjct: 399 AMTQAISMLEHCHWRPSHGIIMSIAEHLERNRNFEDANHFIQVIHHLGVASLPLYKVLLR 458

Query: 179 MHVAKQKPIDDILKLMEDDNVDIDSETMGLVHA 277
           MH+  Q+   DILK+ME D +++D ET  LV A
Sbjct: 459 MHLHAQRAAFDILKMMEKDKIELDDETSALVQA 491


Top