BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00034229
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschsch...   279   9e-76
gb|AAS86824.1| RNA polymerase II second largest subunit, partial...   279   9e-76
gb|AAW22929.1| RNA polymerase II second largest subunit [Musa ve...   278   1e-75
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   278   2e-75
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p...   278   2e-75

>gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  279 bits (713), Expect(2) = 9e-76
 Identities = 134/148 (90%), Positives = 143/148 (96%)
 Frame = -1

Query: 487  GTRVSGDDVIIGKTSPIAQDDGPGQASRFTQNDHSTSLRHSESGVVDQVCLTTNADGLRF 308
            GTRVSG+DVIIGKT+PIAQDD  GQASR+T+ DHSTSLRHSESG+VDQV LTTNADGLRF
Sbjct: 760  GTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 819

Query: 307  VNIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTI 128
            V +RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTI
Sbjct: 820  VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 879

Query: 127  GQLIKCIMGKVAAHMGKEGDATPFTDVT 44
            GQLI+CIMGKVAAHMGKEGDATPFTDVT
Sbjct: 880  GQLIECIMGKVAAHMGKEGDATPFTDVT 907



 Score = 30.0 bits (66), Expect(2) = 9e-76
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 42  ISRALHKCGYQMWG 1
           IS+ALHKCGYQM G
Sbjct: 911 ISKALHKCGYQMRG 924


>gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
           californica]
          Length = 559

 Score =  279 bits (713), Expect(2) = 9e-76
 Identities = 134/148 (90%), Positives = 143/148 (96%)
 Frame = -1

Query: 487 GTRVSGDDVIIGKTSPIAQDDGPGQASRFTQNDHSTSLRHSESGVVDQVCLTTNADGLRF 308
           GTRVSG+DVIIGKT+PIAQDD  GQASR+T+ DHSTSLRHSESG+VDQV LTTNADGLRF
Sbjct: 368 GTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 427

Query: 307 VNIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTI 128
           V +RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTI
Sbjct: 428 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 487

Query: 127 GQLIKCIMGKVAAHMGKEGDATPFTDVT 44
           GQLI+CIMGKVAAHMGKEGDATPFTDVT
Sbjct: 488 GQLIECIMGKVAAHMGKEGDATPFTDVT 515



 Score = 30.0 bits (66), Expect(2) = 9e-76
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 42  ISRALHKCGYQMWG 1
           IS+ALHKCGYQM G
Sbjct: 519 ISKALHKCGYQMRG 532


>gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score =  278 bits (711), Expect(2) = 1e-75
 Identities = 134/148 (90%), Positives = 142/148 (95%)
 Frame = -1

Query: 487 GTRVSGDDVIIGKTSPIAQDDGPGQASRFTQNDHSTSLRHSESGVVDQVCLTTNADGLRF 308
           GTRVSG+DVIIGKTSPI QDD  GQASR+T+ DHSTSLRHSESG+VDQV LTTNADGLRF
Sbjct: 343 GTRVSGEDVIIGKTSPIPQDDAQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 402

Query: 307 VNIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTI 128
           V +RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTI
Sbjct: 403 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 462

Query: 127 GQLIKCIMGKVAAHMGKEGDATPFTDVT 44
           GQLI+CIMGKVAAHMGKEGDATPFTDVT
Sbjct: 463 GQLIECIMGKVAAHMGKEGDATPFTDVT 490



 Score = 30.0 bits (66), Expect(2) = 1e-75
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 42  ISRALHKCGYQMWG 1
           IS+ALHKCGYQM G
Sbjct: 494 ISKALHKCGYQMRG 507


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  278 bits (710), Expect(2) = 2e-75
 Identities = 133/148 (89%), Positives = 143/148 (96%)
 Frame = -1

Query: 487  GTRVSGDDVIIGKTSPIAQDDGPGQASRFTQNDHSTSLRHSESGVVDQVCLTTNADGLRF 308
            GTRVSG+DVIIGKT+PI+QDD  GQASR+T+ DHSTSLRHSESG+VDQV LTTNADGLRF
Sbjct: 866  GTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 925

Query: 307  VNIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTI 128
            V +RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTI
Sbjct: 926  VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 985

Query: 127  GQLIKCIMGKVAAHMGKEGDATPFTDVT 44
            GQLI+CIMGKVAAHMGKEGDATPFTDVT
Sbjct: 986  GQLIECIMGKVAAHMGKEGDATPFTDVT 1013



 Score = 30.0 bits (66), Expect(2) = 2e-75
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 42   ISRALHKCGYQMWG 1
            IS+ALHKCGYQM G
Sbjct: 1017 ISKALHKCGYQMRG 1030


>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  278 bits (710), Expect(2) = 2e-75
 Identities = 133/148 (89%), Positives = 143/148 (96%)
 Frame = -1

Query: 487  GTRVSGDDVIIGKTSPIAQDDGPGQASRFTQNDHSTSLRHSESGVVDQVCLTTNADGLRF 308
            GTRVSG+DVIIGKT+PI+QDD  GQASR+T+ DHSTSLRHSESG+VDQV LTTNADGLRF
Sbjct: 760  GTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 819

Query: 307  VNIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTI 128
            V +RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTI
Sbjct: 820  VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 879

Query: 127  GQLIKCIMGKVAAHMGKEGDATPFTDVT 44
            GQLI+CIMGKVAAHMGKEGDATPFTDVT
Sbjct: 880  GQLIECIMGKVAAHMGKEGDATPFTDVT 907



 Score = 30.0 bits (66), Expect(2) = 2e-75
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 42  ISRALHKCGYQMWG 1
           IS+ALHKCGYQM G
Sbjct: 911 ISKALHKCGYQMRG 924