BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00034153
         (503 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   100   9e-20
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]          94   9e-18
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...    92   4e-17
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]      92   4e-17
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    91   7e-17

>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  100 bits (250), Expect = 9e-20
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
 Frame = -3

Query: 372 FTARKKGYWKRNCMK*LD--KKNKGSATST*GIFVI*ANMYASTNTSWVLDT*CGYHICT 199
           F  ++ G+WKRNC K L   KKN G+  ST GI VI   +  S+  SWV DT    HIC 
Sbjct: 343 FYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGINVIDVLLADSSVNSWVFDTGSVAHICN 402

Query: 198 NMQGLSRYRRLSRNEVDLPVGNRARVAALAV*TFHXXXXXXXXXXLDNCYYVSIMSRNLI 19
           +MQ L++ RR++R E+DL VGN+A+VAAL+  T            L+NCYYV  MSRN+I
Sbjct: 403 SMQSLTKNRRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNII 462

Query: 18  S 16
           S
Sbjct: 463 S 463


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
 Frame = -3

Query: 366 ARKKGYWKRNCMK*LDK---KNKGSATST*GIFVI*ANMYASTNTSWVLDT*CGYHICTN 196
           A++ G+WKRNC K L++   K +   +ST GI VI  N+  S+  SWV DT    HIC +
Sbjct: 215 AKETGHWKRNCKKYLEQLKQKQQNGKSSTSGINVIEINLATSSTDSWVFDTGLVAHICKS 274

Query: 195 MQGLSRYRRLSRNEVDLPVGNRARVAALAV*TFHXXXXXXXXXXLDNCYYVSIMSRNLIS 16
           +QGL R R L+R EVD+ VGN ARVA +AV T            L+NCY +  + +N+IS
Sbjct: 275 LQGLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVIS 334


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
 Frame = -3

Query: 435 NPKVALRKRNPKVLHLRMLSVFTARKKGYWKRNCMK*LDK---KNKGSATST*GIFVI*A 265
           N K  ++K  P     +    F  ++ G+WKRN  K L++   K +   +ST GI VI  
Sbjct: 289 NSKTKVQKTGPA----KDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEI 344

Query: 264 NMYASTNTSWVLDT*CGYHICTNMQGLSRYRRLSRNEVDLPVGNRARVAALAV*TFHXXX 85
           N+  S+  SWV DT    HIC ++QGL R R L+R EVD+ VGN ARVAA+AV T     
Sbjct: 345 NLATSSTDSWVFDTESVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSL 404

Query: 84  XXXXXXXLDNCYYVSIMSRNLIS 16
                  L+NCY +  + +N+IS
Sbjct: 405 PSGIVLELNNCYCIRALCKNVIS 427


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
 Frame = -3

Query: 435 NPKVALRKRNPKVLHLRMLSVFTARKKGYWKRNCMK*LDK---KNKGSATST*GIFVI*A 265
           N K  ++K  P     +    F  ++ G+WKRN  K L++   K +   +ST GI VI  
Sbjct: 216 NSKTKVQKTGPA----KDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEI 271

Query: 264 NMYASTNTSWVLDT*CGYHICTNMQGLSRYRRLSRNEVDLPVGNRARVAALAV*TFHXXX 85
           N+  S+  SWV DT    HIC ++QGL R R L+R EVD+ VGN ARVAA+AV T     
Sbjct: 272 NLATSSTDSWVFDTESVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSL 331

Query: 84  XXXXXXXLDNCYYVSIMSRNLIS 16
                  L+NCY +  + +N+IS
Sbjct: 332 PSGIVLELNNCYCIRALCKNVIS 354


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 58/146 (39%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
 Frame = -3

Query: 435 NPKVALRKRNP---KVLHLRMLSVFTARKKGYWKRNCMK*LDK---KNKGSATST*GIFV 274
           N  + + KR P   K    +    F  ++ G+WKRNC K L++   K +   +ST GI V
Sbjct: 206 NHVMVMHKRKPNNKKSGPAKDAECFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINV 265

Query: 273 I*ANMYASTNTSWVLDT*CGYHICTNMQGLSRYRRLSRNEVDLPVGNRARVAALAV*TFH 94
           I  N+  S+  SWV DT    HIC ++QGL R R L+R EVD+ VGN ARVAA+AV T  
Sbjct: 266 IEINLATSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMP 325

Query: 93  XXXXXXXXXXLDNCYYVSIMSRNLIS 16
                     L+N Y +  + +N+IS
Sbjct: 326 LSLPSRLVLELNNYYCIPALCKNVIS 351