BLASTX nr result

ID: Atractylodes21_contig00033187 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00033187
         (1043 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis...   117   5e-24
ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata] gi...   115   2e-23
ref|XP_002272060.1| PREDICTED: ABC transporter B family member 2...   113   9e-23
ref|XP_003613125.1| ABC transporter B family member [Medicago tr...   112   1e-22
tpg|DAA56196.1| TPA: hypothetical protein ZEAMMB73_911120 [Zea m...   110   4e-22

>ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis thaliana]
           gi|75330788|sp|Q8RY46.1|AB26B_ARATH RecName: Full=ABC
           transporter B family member 26, chloroplastic; Short=ABC
           transporter ABCB.26; Short=AtABCB26; AltName:
           Full=Antigen peptide transporter-like 1; AltName:
           Full=Transporter associated with antigen processing-like
           protein 1; Short=AtTAP1; Flags: Precursor
           gi|19335722|gb|AAL85485.1| transporter associated with
           antigen processing-like protein [Arabidopsis thaliana]
           gi|110737412|dbj|BAF00650.1| transporter associated with
           antigen processing-like protein [Arabidopsis thaliana]
           gi|332196967|gb|AEE35088.1| ABC transporter B family
           member 26 [Arabidopsis thaliana]
          Length = 700

 Score =  117 bits (293), Expect = 5e-24
 Identities = 69/164 (42%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
 Frame = -1

Query: 689 RGSTTKFKIASSCCYNFDSTSLGELLVAKDRVDGMKQNSST--NIEKWVDFI----PGRS 528
           + ST  +++ S  C    ST  G +    +  +G   N S    I + +DF+    PG S
Sbjct: 47  QSSTRNYRLPSINC----STVNGAVAETAEYYEGEGDNVSLAEKIRQCIDFLRTILPGGS 102

Query: 527 WWNLEDEDEAGKMKATNPITVWYVLCRMWGLVADDKMVIYIGFGSLTFAALSEISIPNLL 348
           WW+  DE + G+  A  P+TVW  L RMW LVA+D+ VI+  F +L  AALSEI+IP+ L
Sbjct: 103 WWSFSDEVD-GRFIA-KPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFL 160

Query: 347 TASIFAAQNGETLLFYKNLKLLTFLCFASGICRYCKSQY*GIKN 216
           TASIF+AQ+G+  +F++N+KLL  LC  SGIC   +  + GI N
Sbjct: 161 TASIFSAQSGDIAVFHRNVKLLVTLCVTSGICSGIRGCFFGIAN 204


>ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata]
           gi|297333157|gb|EFH63575.1| ATTAP1 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  115 bits (288), Expect = 2e-23
 Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
 Frame = -1

Query: 689 RGSTTKFKIASSCCYNFDSTSLGELLVAKDRVDGMKQNSST--NIEKWVDFI----PGRS 528
           + S+  +++ S  C    ST  G +    +  +G   N S    I + +DFI    PG S
Sbjct: 47  QSSSRNYRLPSINC----STVNGAVAETAEYYEGEGDNVSVPEKIRQCIDFIRTILPGGS 102

Query: 527 WWNLEDEDEAGKMKATNPITVWYVLCRMWGLVADDKMVIYIGFGSLTFAALSEISIPNLL 348
           WW+  DE + G+  A  P+TVW  L RMW LVA+D+ VI+  F +L  AALSEI+IP+ L
Sbjct: 103 WWSFSDEVD-GRFIA-KPVTVWRALTRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFL 160

Query: 347 TASIFAAQNGETLLFYKNLKLLTFLCFASGICRYCKSQY*GIKN 216
           TASIF+AQ+G+  +F +N+KLL  LC  SGIC   +  + GI N
Sbjct: 161 TASIFSAQSGDIAVFRRNVKLLVTLCVTSGICSGIRGCFFGIAN 204


>ref|XP_002272060.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like
           [Vitis vinifera]
          Length = 705

 Score =  113 bits (282), Expect = 9e-23
 Identities = 57/108 (52%), Positives = 74/108 (68%)
 Frame = -1

Query: 539 PGRSWWNLEDEDEAGKMKATNPITVWYVLCRMWGLVADDKMVIYIGFGSLTFAALSEISI 360
           PG SWW+L D   A  +    P+TV   L RMWGLVA D+ +I+  F +L  AA+SEISI
Sbjct: 104 PGGSWWSLSDH--ADFIMTAKPVTVLRALQRMWGLVAKDRWIIFAAFSALVLAAVSEISI 161

Query: 359 PNLLTASIFAAQNGETLLFYKNLKLLTFLCFASGICRYCKSQY*GIKN 216
           P+ LTASIF+AQ+GE ++F++N+ LL FLCFASGIC   +    GI N
Sbjct: 162 PHFLTASIFSAQSGEIVVFHRNVGLLVFLCFASGICSGLRGCCFGIAN 209


>ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula]
           gi|355514460|gb|AES96083.1| ABC transporter B family
           member [Medicago truncatula]
          Length = 712

 Score =  112 bits (281), Expect = 1e-22
 Identities = 66/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
 Frame = -1

Query: 716 FSYPGNIRFRGSTTKFKIASSCCYNFDSTSLGELLVAKDRVDGMKQNSS--TNIEKWVDF 543
           FS      F  S++K  + SS   +  S+S+ E+ +  +       +      I K V F
Sbjct: 38  FSSVNRHHFTLSSSKRILLSS---SIKSSSINEVSIHNNSESASNASDEFLDRIRKLVSF 94

Query: 542 IP----GRSWWNLEDEDEAGKMKATNPITVWYVLCRMWGLVADDKMVIYIGFGSLTFAAL 375
           +P    G +WWN  D+ E        P+TVWY L +MW LVA D+ VI+  F +L  AA+
Sbjct: 95  LPSIFPGGTWWNFSDDVEVSMFN--QPVTVWYALGKMWNLVAKDRWVIFAAFSALIIAAV 152

Query: 374 SEISIPNLLTASIFAAQNGETLLFYKNLKLLTFLCFASGICRYCKSQY*GIKN 216
           SEISIP+ LTASIF+AQ G+  +F+ N++LL  +C  SGIC   +  + GI N
Sbjct: 153 SEISIPHFLTASIFSAQGGDIKVFHGNVRLLILMCVTSGICSGIRGCFFGIAN 205


>tpg|DAA56196.1| TPA: hypothetical protein ZEAMMB73_911120 [Zea mays]
          Length = 536

 Score =  110 bits (276), Expect = 4e-22
 Identities = 60/109 (55%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
 Frame = -1

Query: 563 IEKWVDFIPGRSWWNLEDEDEAGKMKAT---NPITVWYVLCRMWGLVADDKMVIYIGFGS 393
           IE+  + +PG SWW LED DEAG        +  T    L RMW LVA D++VIY+GF S
Sbjct: 70  IERLRNVLPGGSWWRLEDGDEAGDGAGRAEGSGTTAVSALRRMWALVAGDRLVIYVGFAS 129

Query: 392 LTFAALSEISIPNLLTASIFAAQNGETLLFYKNLKLLTFLCFASGICRY 246
           L  AALSEI+IP+LL ASIF+AQNG   +FY+N KLL  LC  SG+ RY
Sbjct: 130 LVGAALSEIAIPHLLAASIFSAQNGGA-VFYRNAKLLVVLCLVSGVFRY 177


Top