BLASTX nr result

ID: Atractylodes21_contig00033106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00033106
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]    72   5e-23
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...   100   2e-19
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]         74   2e-19
gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo s...    98   8e-19
emb|CAE03590.1| OSJNBa0087O24.13 [Oryza sativa Japonica Group]         74   9e-19

>emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]
          Length = 1448

 Score = 72.4 bits (176), Expect(2) = 5e-23
 Identities = 34/75 (45%), Positives = 43/75 (57%)
 Frame = +2

Query: 32  YYLEQGRLLYKGRLVIPYNSSFIPKLLHDYHDAVTRGHVGEFRTYHRLAADWFWPGMRKA 211
           Y L+ G L+YKG LV P  S  +P LL + H +V  GH G   TY RL  D+FW GM+  
Sbjct: 557 YALDHGILIYKGCLVFPKASPLVPALLQEGHASVVGGHSGFLWTYKRLTRDFFWVGMKND 616

Query: 212 VTNYVRACPTCQQQK 256
           +  +V  C  CQQ K
Sbjct: 617 IKEFVEKCLVCQQNK 631



 Score = 60.1 bits (144), Expect(2) = 5e-23
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +3

Query: 255 KTTTTHPAGLLQPLPLPSQVWEELTMDFIEGLPRSQGF 368
           KT T   AGLLQPLP+P ++W+++TMDFIEGLP+S+G+
Sbjct: 631 KTLTLSLAGLLQPLPIPDKIWDDVTMDFIEGLPKSEGY 668


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score =  100 bits (248), Expect = 2e-19
 Identities = 46/86 (53%), Positives = 58/86 (67%)
 Frame = +2

Query: 17   RDHAGYYLEQGRLLYKGRLVIPYNSSFIPKLLHDYHDAVTRGHVGEFRTYHRLAADWFWP 196
            R  + + L  G LL+KGR VIP +S+ IPKLL++YHDA   GH GE +TY RLAA+W+W 
Sbjct: 1143 RTPSHFTLVDGNLLFKGRYVIPSSSTIIPKLLYEYHDAPMGGHAGELKTYLRLAAEWYWR 1202

Query: 197  GMRKAVTNYVRACPTCQQQKDNYHSP 274
            GMR+ V  YV  C  CQQQK +   P
Sbjct: 1203 GMRQEVARYVHQCLICQQQKVSQQHP 1228



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 6/52 (11%)
 Frame = +3

Query: 228  ELAQHVNS------KKTTTTHPAGLLQPLPLPSQVWEELTMDFIEGLPRSQG 365
            E+A++V+       +K +  HP GLLQPLP+PS VWE+++MDFIEGLP S+G
Sbjct: 1207 EVARYVHQCLICQQQKVSQQHPRGLLQPLPIPSLVWEDISMDFIEGLPVSKG 1258


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score = 74.3 bits (181), Expect(2) = 2e-19
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +2

Query: 32   YYLEQGRLLYKGRLVIPYNSSFIPKLLHDYHDAVTRGHVGEFRTYHRLAADWFWPGMRKA 211
            Y  E G L YKGR+ +  N+    +L+  YH +   GH G   TYHR+ + ++WPG++KA
Sbjct: 1144 YSQEAGLLRYKGRIYVGENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKKA 1203

Query: 212  VTNYVRACPTCQQQK-DNYHSP 274
            V  ++R CP CQ  K ++ H P
Sbjct: 1204 VEGFIRECPICQVTKAEHIHIP 1225



 Score = 46.2 bits (108), Expect(2) = 2e-19
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +3

Query: 255  KTTTTHPAGLLQPLPLPSQVWEELTMDFIEGLPRSQG 365
            K    H  GLL PL +P   W  +TMDF+EGLP+S G
Sbjct: 1218 KAEHIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNG 1254


>gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1185

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 43/84 (51%), Positives = 55/84 (65%)
 Frame = +2

Query: 32   YYLEQGRLLYKGRLVIPYNSSFIPKLLHDYHDAVTRGHVGEFRTYHRLAADWFWPGMRKA 211
            Y ++QGRL YKGRLV+P  SS +P +LH +HD V  GH G+ RTY R+AA+ +W GM+  
Sbjct: 841  YSIKQGRLFYKGRLVLPKTSSLLPTILHTFHDLVVGGHSGQLRTYKRIAAELYWEGMKND 900

Query: 212  VTNYVRACPTCQQQKDNYHSPCRL 283
            +  YV  CP CQQ K    SP  L
Sbjct: 901  IKIYVDQCPVCQQNKTQALSPAGL 924



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +3

Query: 255  KTTTTHPAGLLQPLPLPSQVWEELTMDFIEGLPRSQGF 368
            KT    PAGLLQPLP+PS++WE+++MDFIEGLPRS+ F
Sbjct: 915  KTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTF 952


>emb|CAE03590.1| OSJNBa0087O24.13 [Oryza sativa Japonica Group]
          Length = 1311

 Score = 73.9 bits (180), Expect(2) = 9e-19
 Identities = 33/89 (37%), Positives = 47/89 (52%)
 Frame = +2

Query: 2    LETASRDHAGYYLEQGRLLYKGRLVIPYNSSFIPKLLHDYHDAVTRGHVGEFRTYHRLAA 181
            L    + H  Y L  G L YK RL +   +    KL   +HD+   GH GE  TY R   
Sbjct: 859  LRITPQGHPPYTLTSGILRYKNRLYVGAGTDLRAKLQQSFHDSALGGHSGERATYQRAKL 918

Query: 182  DWFWPGMRKAVTNYVRACPTCQQQKDNYH 268
             ++WPGM+K + +YV+ CP CQ+ K  ++
Sbjct: 919  LFYWPGMKKDIASYVKLCPVCQKNKSEHN 947



 Score = 44.3 bits (103), Expect(2) = 9e-19
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 279  GLLQPLPLPSQVWEELTMDFIEGLPRS 359
            GLL PLP+P   W  ++MDFIEGLP+S
Sbjct: 951  GLLHPLPIPEMAWTHISMDFIEGLPKS 977


Top