BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00031649
         (1184 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...   601   e-169
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]   589   e-166
ref|XP_003610900.1| Pentatricopeptide repeat-containing protein ...   565   e-159
ref|XP_002519997.1| pentatricopeptide repeat-containing protein,...   560   e-157
ref|NP_188439.2| pentatricopeptide repeat-containing protein [Ar...   551   e-155

>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  601 bits (1549), Expect = e-169
 Identities = 292/394 (74%), Positives = 346/394 (87%), Gaps = 1/394 (0%)
 Frame = -3

Query: 1179 IEDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTT 1000
            I D++KT QVYQ I++ GLKPDEDTYNTLI+MYCRD RPEEGLS+MHEM + GL+ KL T
Sbjct: 935  IGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDT 994

Query: 999  YKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            YKSLI+AFGKLQMVEQAEELF  +  +  KLDRSFYH+MMK +R++G+HSK+E+LL +M+
Sbjct: 995  YKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMK 1054

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
            EAG+EPTIATMHLLM+SY  SG P EAEKVL+NLK  G  LSTL Y SVI++Y K+GD+ 
Sbjct: 1055 EAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHN 1114

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLL-KNS 463
            V IQKLMEM+++G+EPDHRIWTCF+RAASL +  SEA+ +L A+ D GFDLP++LL + S
Sbjct: 1115 VAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRLLTEKS 1174

Query: 462  ESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAVKKDIYRHDVF 283
            +S+V E+D  L +L P+EDNAA NFVNA+EDLLWAFELRATASWVFQLAVK+ IYRHDVF
Sbjct: 1175 DSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASWVFQLAVKRSIYRHDVF 1234

Query: 282  RVADKDWGADFRKLSAGAALVGLTLWLDHMQDASLEGFPLSPKSVVLITGVSEYNDISLN 103
            RVA+KDWGADFRK+SAG+ALVGLTLWLDHMQDASL+G+PLSPKSVVLITG +EYN +SLN
Sbjct: 1235 RVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASLQGYPLSPKSVVLITGTAEYNMVSLN 1294

Query: 102  STLKAYLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1
            STLKA+LWEMGSPFLPCKTRSGLLVAKAHSLRMW
Sbjct: 1295 STLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1328



 Score = 87.0 bits (214), Expect = 8e-15
 Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 11/258 (4%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            ++  +++  G++PD  TYNTLI    R+   EE + + ++MV       L TY ++I+ +
Sbjct: 280  ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 339

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
            G+  M  +A  LF  +  +G+  D   Y+ ++  +   G+  K +E+ + M + G     
Sbjct: 340  GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 399

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLME 616
             T + ++  YG  G    A ++ +++K SG S   +TY  +I+S  K+       + + E
Sbjct: 400  MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 459

Query: 615  MRREGVEPDHRIWT---CFIRAASLCKTASEAMTILNAIG--------DVGFDLPVKLLK 469
            M    V+P  R ++   C    A     A E    +   G         V  D+ ++  +
Sbjct: 460  MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 519

Query: 468  NSESMVLEIDQVLGELKP 415
            + ++M L  + VL   KP
Sbjct: 520  SGKAMKLYQEMVLHSFKP 537



 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 46/202 (22%), Positives = 95/202 (47%)
 Frame = -3

Query: 1167 RKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSL 988
            R+  ++++ ++  G  PD  TYN+L+  + R+   ++   +  +MVK G      TY ++
Sbjct: 346  REAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTI 405

Query: 987  IAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGI 808
            I  +GK    + A +L+  M+  G   D   Y +++ +        ++ E++  M  A +
Sbjct: 406  IHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARV 465

Query: 807  EPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQ 628
            +PT+ T   L+  Y  +G   EAE+  + +  SG     L Y  +++   +  +    ++
Sbjct: 466  KPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMK 525

Query: 627  KLMEMRREGVEPDHRIWTCFIR 562
               EM     +PDH ++   +R
Sbjct: 526  LYQEMVLHSFKPDHALYEVMLR 547



 Score = 80.9 bits (198), Expect = 6e-13
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLS--MMHEMVKEGLDAKLTTY 997
            + K  ++   ++  G +PD  ++NTLI    +       L+  +++E+ + G+   + TY
Sbjct: 238  FTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITY 297

Query: 996  KSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQE 817
             +LI+A  +   +E+A +++  M     + D   Y+ M+  Y   G   ++  L K ++ 
Sbjct: 298  NTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLES 357

Query: 816  AGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTV 637
             G  P   T + L+ ++   GN  + +++  ++   G     +TY ++I  Y K G + +
Sbjct: 358  KGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDL 417

Query: 636  GIQKLMEMRREGVEPDHRIWTCFIRA---ASLCKTASEAMT-ILNA 511
              Q   +M+  G  PD   +T  I +   A++ K A+E M+ +LNA
Sbjct: 418  AFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNA 463



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 44/207 (21%), Positives = 104/207 (50%), Gaps = 3/207 (1%)
 Frame = -3

Query: 1176 EDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGL---DAKL 1006
            E + + +Q++  ++  G++P +  Y +++V YC+   PE    ++ +  ++GL   D  +
Sbjct: 690  ELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSI 749

Query: 1005 TTYKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKL 826
             T   +I A+GKL++ ++AE L   +R++   +DR  ++ ++  Y ++G + ++  +   
Sbjct: 750  HT--GVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNT 807

Query: 825  MQEAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGD 646
            M   G  PT+ +++ LM +    G   E   V+  L+  G  +S  +   +++++  +G+
Sbjct: 808  MMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGN 867

Query: 645  YTVGIQKLMEMRREGVEPDHRIWTCFI 565
                 +    M+  G  P   ++   I
Sbjct: 868  IFEVKKIYQGMKAAGYFPTMHLYRIMI 894



 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 2/179 (1%)
 Frame = -3

Query: 993 SLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEA 814
           ++++  GK      A E+F +         +  Y+ MM  Y  TG  +K +ELL LM+  
Sbjct: 193 TILSVLGKANQEALAVEIFARAEAASGNTVQ-VYNAMMGVYARTGRFTKVQELLDLMRSR 251

Query: 813 GIEPTIATMHLLMISYGSSGNPAE--AEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
           G EP + + + L+ +   SG      A ++LN ++ SG     +TY ++I +  +  +  
Sbjct: 252 GCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLE 311

Query: 639 VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLLKNS 463
             ++   +M     +PD   +   I     C  + EA  +   +   GF LP  +  NS
Sbjct: 312 EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGF-LPDAVTYNS 369


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  589 bits (1518), Expect = e-166
 Identities = 292/414 (70%), Positives = 346/414 (83%), Gaps = 21/414 (5%)
 Frame = -3

Query: 1179 IEDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTT 1000
            I D++KT QVYQ I++ GLKPDEDTYNTLI+MYCRD RPEEGLS+MHEM + GL+ KL T
Sbjct: 967  IGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDT 1026

Query: 999  YKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            YKSLI+AFGKLQMVEQAEELF  +  +  KLDRSFYH+MMK +R++G+HSK+E+LL +M+
Sbjct: 1027 YKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMK 1086

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
            EAG+EPTIATMHLLM+SY  SG P EAEKVL+NLK  G  LSTL Y SVI++Y K+GD+ 
Sbjct: 1087 EAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHN 1146

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLL-KNS 463
            V IQKLMEM+++G+EPDHRIWTCF+RAASL +  SEA+ +L A+ D GFDLP++LL + S
Sbjct: 1147 VAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRLLTEKS 1206

Query: 462  ESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAVKKDIYRHDVF 283
            +S+V E+D  L +L P+EDNAA NFVNA+EDLLWAFELRATASWVFQLAVK+ IYRHDVF
Sbjct: 1207 DSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASWVFQLAVKRSIYRHDVF 1266

Query: 282  RVADKDWGADFRKLSAGAALVGLTLWLDHM--------------------QDASLEGFPL 163
            RVA+KDWGADFRK+SAG+ALVGLTLWLDHM                    QDASL+G+PL
Sbjct: 1267 RVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFLITIFVQLMEEYFYFWQDASLQGYPL 1326

Query: 162  SPKSVVLITGVSEYNDISLNSTLKAYLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1
            SPKSVVLITG +EYN +SLNSTLKA+LWEMGSPFLPCKTRSGLLVAKAHSLRMW
Sbjct: 1327 SPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1380



 Score = 87.4 bits (215), Expect = 6e-15
 Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 11/258 (4%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            ++  +++  G++PD  TYNTLI    R+   EE + + ++MV       L TY ++I+ +
Sbjct: 312  ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 371

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
            G+  M  +A  LF  +  +G+  D   Y+ ++  +   G+  K +E+ + M + G     
Sbjct: 372  GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLME 616
             T + ++  YG  G    A ++ +++K SG S   +TY  +I+S  K+       + + E
Sbjct: 432  MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 491

Query: 615  MRREGVEPDHRIWT---CFIRAASLCKTASEAMTILNAIG--------DVGFDLPVKLLK 469
            M    V+P  R ++   C    A     A E    +   G         V  D+ ++  +
Sbjct: 492  MLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 551

Query: 468  NSESMVLEIDQVLGELKP 415
            + ++M L  + VL   KP
Sbjct: 552  SGKAMKLYQEMVLHSFKP 569



 Score = 83.2 bits (204), Expect = 1e-13
 Identities = 46/202 (22%), Positives = 95/202 (47%)
 Frame = -3

Query: 1167 RKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSL 988
            R+  ++++ ++  G  PD  TYN+L+  + R+   ++   +  +MVK G      TY ++
Sbjct: 378  REAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTI 437

Query: 987  IAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGI 808
            I  +GK    + A +L+  M+  G   D   Y +++ +        ++ E++  M  A +
Sbjct: 438  IHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXV 497

Query: 807  EPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQ 628
            +PT+ T   L+  Y  +G   EAE+  + +  SG     L Y  +++   +  +    ++
Sbjct: 498  KPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMK 557

Query: 627  KLMEMRREGVEPDHRIWTCFIR 562
               EM     +PDH ++   +R
Sbjct: 558  LYQEMVLHSFKPDHALYEVMLR 579



 Score = 80.9 bits (198), Expect = 6e-13
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLS--MMHEMVKEGLDAKLTTY 997
            + K  ++   ++  G +PD  ++NTLI    +       L+  +++E+ + G+   + TY
Sbjct: 270  FTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITY 329

Query: 996  KSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQE 817
             +LI+A  +   +E+A +++  M     + D   Y+ M+  Y   G   ++  L K ++ 
Sbjct: 330  NTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLES 389

Query: 816  AGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTV 637
             G  P   T + L+ ++   GN  + +++  ++   G     +TY ++I  Y K G + +
Sbjct: 390  KGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDL 449

Query: 636  GIQKLMEMRREGVEPDHRIWTCFIRA---ASLCKTASEAMT-ILNA 511
              Q   +M+  G  PD   +T  I +   A++ K A+E M+ +LNA
Sbjct: 450  AFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNA 495



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 44/207 (21%), Positives = 104/207 (50%), Gaps = 3/207 (1%)
 Frame = -3

Query: 1176 EDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGL---DAKL 1006
            E + + +Q++  ++  G++P +  Y +++V YC+   PE    ++ +  ++GL   D  +
Sbjct: 722  ELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSI 781

Query: 1005 TTYKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKL 826
             T   +I A+GKL++ ++AE L   +R++   +DR  ++ ++  Y ++G + ++  +   
Sbjct: 782  HT--GVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNT 839

Query: 825  MQEAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGD 646
            M   G  PT+ +++ LM +    G   E   V+  L+  G  +S  +   +++++  +G+
Sbjct: 840  MMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGN 899

Query: 645  YTVGIQKLMEMRREGVEPDHRIWTCFI 565
                 +    M+  G  P   ++   I
Sbjct: 900  IFEVKKIYQGMKAAGYFPTMHLYRIMI 926



 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 40/162 (24%), Positives = 70/162 (43%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            Q+Y  +K  G  PD  TY  LI    +    +E   +M EM+   +   L T+ +LI  +
Sbjct: 452  QLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGY 511

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
             K     +AEE F  M R G K D   Y +M+          K+ +L + M     +P  
Sbjct: 512  AKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDH 571

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVI 670
            A   +++   G      +  KV+ +++     +++   CS++
Sbjct: 572  ALYEVMLRVLGKENREEDVHKVVKDMEELC-GMNSQVICSIL 612


>ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355512235|gb|AES93858.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  565 bits (1456), Expect = e-159
 Identities = 272/395 (68%), Positives = 327/395 (82%), Gaps = 1/395 (0%)
 Frame = -3

Query: 1182 SIEDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLT 1003
            SIE+++    +YQ I+D GL PDE+TYNTLI MYCRD RPEEGLS+MH+M   GL+ K  
Sbjct: 976  SIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRD 1035

Query: 1002 TYKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLM 823
            TY+S+IAAF K Q+ +QAEELF ++R  GYKLDRSFYHLMMK YR++G H K+E LL++M
Sbjct: 1036 TYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIM 1095

Query: 822  QEAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDY 643
            +EAGIEP  ATMHLLM+SYG SG P EA+++L NL++ G  L TL Y SVI++Y K GD 
Sbjct: 1096 KEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDA 1155

Query: 642  TVGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLL-KN 466
              GI+KL EM+   +EPDHRIWTCFIRAASL    ++A  +LNA+  VGFDLP++LL + 
Sbjct: 1156 KAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGFDLPIRLLGEK 1215

Query: 465  SESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAVKKDIYRHDV 286
            SES+V E+DQ LG L+ +EDNAA NFVNA+ DLLWAFELRATASWVFQLA+K+ IYRHD+
Sbjct: 1216 SESLVSEVDQCLGRLEHVEDNAAFNFVNALVDLLWAFELRATASWVFQLAIKRSIYRHDI 1275

Query: 285  FRVADKDWGADFRKLSAGAALVGLTLWLDHMQDASLEGFPLSPKSVVLITGVSEYNDISL 106
            FRVA KDWGADFRKLSAG+ALVGLTLWLDHMQDASL+G+P SPKSVVLITG +EYN +SL
Sbjct: 1276 FRVAQKDWGADFRKLSAGSALVGLTLWLDHMQDASLQGYPESPKSVVLITGTAEYNMVSL 1335

Query: 105  NSTLKAYLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1
            +STLKA+LWEMGSPFLPCKTR G+LVAKAHSLRMW
Sbjct: 1336 DSTLKAFLWEMGSPFLPCKTRHGVLVAKAHSLRMW 1370



 Score = 93.6 bits (231), Expect = 9e-17
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
 Frame = -3

Query: 1164 KTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLI 985
            K   +++K+K +G  PD  TYN+L+  + ++   E+   +  EMVK G      TY ++I
Sbjct: 389  KAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTII 448

Query: 984  AAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQE---A 814
              +GK    ++A  L+  M+  G   D   Y +++      G  SK EE  K+M E   A
Sbjct: 449  HMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDL---LGKASKIEEASKVMSEMLDA 505

Query: 813  GIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVG 634
            G++PT+ T   L+ +Y   G   EAE+  N ++ SG     L Y  +++ + +  +    
Sbjct: 506  GVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKA 565

Query: 633  IQKLMEMRREGVEPDHRIWTCFIRA 559
                 EM   G  PD  ++   + A
Sbjct: 566  AALYQEMIEAGFTPDTGLYEVMLPA 590



 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 2/228 (0%)
 Frame = -3

Query: 1173 DYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLS--MMHEMVKEGLDAKLTT 1000
            ++ K  +++  +++ G +PD  ++NTLI    + C    GL+  ++ E+ K GL   + T
Sbjct: 279  NFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIIT 338

Query: 999  YKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            Y +LI+A  +   +++A  +F  M     + D   Y+ M+  Y   G   K+E L + ++
Sbjct: 339  YNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLK 398

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
              G  P   T + L+ ++   GN  +   +   +   G     +TY ++I  Y K G + 
Sbjct: 399  SNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHD 458

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVG 496
              ++   +M+  G  PD   +T  I          EA  +++ + D G
Sbjct: 459  EALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAG 506



 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 55/211 (26%), Positives = 98/211 (46%)
 Frame = -3

Query: 1128 GLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAFGKLQMVEQA 949
            GL+PD  TYNTLI    R+   +E + +   M        L TY ++I+ +G+     +A
Sbjct: 331  GLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKA 390

Query: 948  EELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTIATMHLLMIS 769
            E LF K++  G+  D   Y+ ++  +   G+  K  ++ + M + G      T + ++  
Sbjct: 391  EHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHM 450

Query: 768  YGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLMEMRREGVEPD 589
            YG  G   EA ++  ++KSSG +   +TY  +I+   K+       + + EM   GV+P 
Sbjct: 451  YGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPT 510

Query: 588  HRIWTCFIRAASLCKTASEAMTILNAIGDVG 496
               ++  I A +      EA    N + + G
Sbjct: 511  LHTYSALICAYAKVGRRVEAEETFNRMRESG 541



 Score = 82.0 bits (201), Expect = 3e-13
 Identities = 63/265 (23%), Positives = 119/265 (44%), Gaps = 12/265 (4%)
 Frame = -3

Query: 1152 VYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAFG 973
            V+  ++ +  +PD  TYN +I +Y R     +   +  ++   G      TY SL+ AF 
Sbjct: 358  VFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFS 417

Query: 972  KLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTIA 793
            K    E+  ++  +M + G+  D   Y+ ++  Y   G H ++  L + M+ +G  P   
Sbjct: 418  KEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAV 477

Query: 792  TMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLMEM 613
            T  +L+   G +    EA KV++ +  +G   +  TY ++I +Y K G      +    M
Sbjct: 478  TYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRM 537

Query: 612  RREGVEPDHRIWTC----FIRAASLCKTASEAMTILNA--IGDVGF---DLPVKLLKNSE 460
            R  G++ DH  ++     F+R   + K A+    ++ A    D G     LP  + +N  
Sbjct: 538  RESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMG 597

Query: 459  SMVLEIDQ---VLGELKPMEDNAAL 394
             ++  + Q    LG + P + ++ L
Sbjct: 598  DVIERVVQDTKELGSMNPHDISSVL 622



 Score = 82.0 bits (201), Expect = 3e-13
 Identities = 56/266 (21%), Positives = 126/266 (47%), Gaps = 5/266 (1%)
 Frame = -3

Query: 1176 EDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEG--LDAKLT 1003
            E +   +Q++  ++ +G++P E  Y +++ +YCR   PE    +++   K    LD    
Sbjct: 731  EQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTV 790

Query: 1002 TYKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLM 823
                +I  +GKL+M + AE +   +R+   K+DR  ++ ++  Y  +G + ++  +   M
Sbjct: 791  HIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTM 850

Query: 822  QEAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDY 643
               G  PT+ +++ L+ +    G  +E   V+  L+     +S  +   ++E++ ++G+ 
Sbjct: 851  MREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGN- 909

Query: 642  TVGIQKLME-MRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLLKN 466
               +QK+   M+  G  P   ++   I      K   +   +L+ +G+ GF   +++  +
Sbjct: 910  LFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNS 969

Query: 465  SESMVLEID--QVLGELKPMEDNAAL 394
               +   I+  Q +G +  M  +A L
Sbjct: 970  VLKLYSSIEEFQNMGVIYQMIQDAGL 995



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 42/189 (22%), Positives = 83/189 (43%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            +VY  +K  G  P    Y  +I + CR  R  +   M+ EM + G    L  + S++  +
Sbjct: 915  KVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLY 974

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
              ++  +    ++  ++  G   D   Y+ ++  Y       +   L+  M+  G+EP  
Sbjct: 975  SSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKR 1034

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLME 616
             T   ++ ++       +AE++   L+S+G  L    Y  +++ Y  SGD+      L  
Sbjct: 1035 DTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEI 1094

Query: 615  MRREGVEPD 589
            M+  G+EP+
Sbjct: 1095 MKEAGIEPN 1103



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 43/221 (19%), Positives = 92/221 (41%)
 Frame = -3

Query: 1152 VYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAFG 973
            V Q+++D  LK  + +   ++  + +     E   + + M   G    +  Y+ +I    
Sbjct: 881  VIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLC 940

Query: 972  KLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTIA 793
            + + V     +  +M   G+K D   ++ ++K Y S         + +++Q+AG+ P   
Sbjct: 941  RFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEE 1000

Query: 792  TMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLMEM 613
            T + L+  Y     P E   +++ +KS G      TY S+I ++ K   Y    +   E+
Sbjct: 1001 TYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEEL 1060

Query: 612  RREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFD 490
            R  G + D   +   ++         +A  +L  + + G +
Sbjct: 1061 RSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIE 1101



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 2/227 (0%)
 Frame = -3

Query: 1095 LIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAFGKLQMVEQAEELFVKMRREG 916
            LI++ C+  + +  L         G     T Y+SLI    K +  + A +LF  MR  G
Sbjct: 688  LIIILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNG 747

Query: 915  YKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTIATMHLLMI--SYGSSGNPAE 742
             +     Y  M+  Y   G    ++ LL   ++  I     T+H++ I  +YG       
Sbjct: 748  VEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQS 807

Query: 741  AEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLMEMRREGVEPDHRIWTCFIR 562
            AE ++ NL+     +    + ++I +Y  SG Y         M REG  P        ++
Sbjct: 808  AESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQ 867

Query: 561  AASLCKTASEAMTILNAIGDVGFDLPVKLLKNSESMVLEIDQVLGEL 421
            A  +    SE   ++  +     D+ +K+ K+S  ++LE     G L
Sbjct: 868  ALIVDGRLSELYVVIQELQ----DMDLKISKSSILLMLEAFAQAGNL 910


>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1429

 Score =  560 bits (1443), Expect = e-157
 Identities = 277/394 (70%), Positives = 333/394 (84%), Gaps = 1/394 (0%)
 Frame = -3

Query: 1179 IEDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTT 1000
            I+D+RKT Q+YQ+IK+DGL+PDEDTYNTLIVMYCRD RPEEG S+MHEM + GL+ KL T
Sbjct: 923  IDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDT 982

Query: 999  YKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            YKSLIAAFGK Q+V  AEELF ++  +G KLDRSFYH+MMK YR++G+HSK+E+LL +M+
Sbjct: 983  YKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMK 1042

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
            +AG+EPTIATMHLLM+SYGSSG P EAEKVL NLK  G SLSTL Y SVI++Y K+ DY+
Sbjct: 1043 DAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYS 1102

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLL-KNS 463
            VGIQKL+EM++EG+EPDHRIWTCFIRAASL +   +A+ +L A+ D GFDLP +L+ + S
Sbjct: 1103 VGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQDSGFDLPSRLITERS 1162

Query: 462  ESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAVKKDIYRHDVF 283
            +S+VLE+D  L  L+ MEDNAA NFVNA+EDLLWAFELRATASWVF+LAVK+ IY HDVF
Sbjct: 1163 DSLVLEVDHCLEMLETMEDNAAFNFVNALEDLLWAFELRATASWVFRLAVKRSIYCHDVF 1222

Query: 282  RVADKDWGADFRKLSAGAALVGLTLWLDHMQDASLEGFPLSPKSVVLITGVSEYNDISLN 103
            RVA++DWGADFRKLS GAAL           DASL+G+P SPKSVVLITG +EYN +SL+
Sbjct: 1223 RVAEQDWGADFRKLSGGAAL-----------DASLQGYPASPKSVVLITGTAEYNMVSLD 1271

Query: 102  STLKAYLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1
            +TLKA LWEMGSPFLPC+TRSGLLVAKAHSLRMW
Sbjct: 1272 NTLKACLWEMGSPFLPCRTRSGLLVAKAHSLRMW 1305



 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 2/227 (0%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRD--CRPEEGLSMMHEMVKEGLDAKLTTY 997
            + K   +   +++ G +PD  ++NTLI    +     P   + +++E+ + GL   + TY
Sbjct: 226  FNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITY 285

Query: 996  KSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQE 817
             +LI+A  +   +E+A ++F  M     + D   Y+ M+  Y   G   K+E+L K ++ 
Sbjct: 286  NTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELES 345

Query: 816  AGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTV 637
             G  P   T + L+ ++   GN  + +++ N +   G     +TY ++I  Y K G + +
Sbjct: 346  KGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGL 405

Query: 636  GIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVG 496
             +Q   +M+  G  PD   +T  I +        EA  +++ + ++G
Sbjct: 406  ALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIG 452



 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 52/197 (26%), Positives = 96/197 (48%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            ++  +++  GL+PD  TYNTLI    R+   EE + +  +M        L TY ++I+ +
Sbjct: 268  ELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVY 327

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
            G+     +AE+LF ++  +GY  D   Y+ ++  +   G+  K +E+   M + G     
Sbjct: 328  GRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDE 387

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLME 616
             T + ++  YG  G    A ++  ++K SG +   +TY  +I+S  K+         + E
Sbjct: 388  MTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSE 447

Query: 615  MRREGVEPDHRIWTCFI 565
            M   GV+P  R ++  I
Sbjct: 448  MLNIGVKPTLRTYSALI 464



 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 48/201 (23%), Positives = 98/201 (48%)
 Frame = -3

Query: 1164 KTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLI 985
            K  Q++++++  G  PD  TYN+L+  + R+   ++   + +EMV+ G      TY ++I
Sbjct: 335  KAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTII 394

Query: 984  AAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIE 805
              +GK      A +L+  M+  G   D   Y +++ +        ++  ++  M   G++
Sbjct: 395  HMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVK 454

Query: 804  PTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQK 625
            PT+ T   L+  Y  +G   EAE+  + ++ SG     L Y  +++ + +  + T  +  
Sbjct: 455  PTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMML 514

Query: 624  LMEMRREGVEPDHRIWTCFIR 562
              EM R+G+ PD  ++   +R
Sbjct: 515  YREMVRDGITPDPTVYGAMLR 535



 Score = 80.9 bits (198), Expect = 6e-13
 Identities = 69/290 (23%), Positives = 135/290 (46%), Gaps = 6/290 (2%)
 Frame = -3

Query: 1164 KTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLI 985
            +  +V+  ++    +PD  TYN +I +Y R     +   +  E+  +G      TY SL+
Sbjct: 300  EAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLL 359

Query: 984  AAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIE 805
             AF +   V++ +E+  +M + G+  D   Y+ ++  Y   G H  + +L + M+ +G  
Sbjct: 360  YAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRT 419

Query: 804  PTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQK 625
            P   T  +L+ S G +    EA  V++ + + G   +  TY ++I  Y ++G      + 
Sbjct: 420  PDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEET 479

Query: 624  LMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGF--DLPV--KLLKN--S 463
               MRR G+ PD   ++  +        A++AM +   +   G   D  V   +L+N   
Sbjct: 480  FDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGR 539

Query: 462  ESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAV 313
            E+ V +I ++   ++ ME+   +N   A+  +L   E    A+ + +LA+
Sbjct: 540  ENKVEDIQRI---IRDMEEVCGMN-PQAIASILVKGECYEDAAGMLRLAI 585



 Score = 72.4 bits (176), Expect = 2e-10
 Identities = 42/225 (18%), Positives = 108/225 (48%), Gaps = 1/225 (0%)
 Frame = -3

Query: 1164 KTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDA-KLTTYKSL 988
            + +Q++  ++ +G+KP +  Y ++++MYC+   PE    ++     EG+   K++   ++
Sbjct: 682  EASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAV 741

Query: 987  IAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGI 808
            I  +GKL++ ++AE L   +R+    +DR  ++ +++ Y ++G + ++  +   M   G 
Sbjct: 742  IETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGP 801

Query: 807  EPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQ 628
             PT+ +++ L+ +    G   E   V   ++  G  +S  +   +++++ +  +     +
Sbjct: 802  SPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKK 861

Query: 627  KLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGF 493
                M+  G  P   ++   I      K   +   ++  + + GF
Sbjct: 862  IYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGF 906



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 43/193 (22%), Positives = 83/193 (43%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKS 991
            Y +   V+  +  DG  P  D+ N L+     D R EE   +  E+   G     ++   
Sbjct: 786  YEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILL 845

Query: 990  LIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAG 811
            ++ AF ++  + +A++++  M+  GY      Y +M+            E ++  M+EAG
Sbjct: 846  ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAG 905

Query: 810  IEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGI 631
              P ++  + ++  Y    +  +  ++   +K  G      TY ++I  Y +      G 
Sbjct: 906  FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGC 965

Query: 630  QKLMEMRREGVEP 592
              + EMRR G+EP
Sbjct: 966  SLMHEMRRIGLEP 978


>ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
            DEFECTIVE 1270; Flags: Precursor
            gi|9294066|dbj|BAB02023.1| unnamed protein product
            [Arabidopsis thaliana] gi|332642528|gb|AEE76049.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 1440

 Score =  551 bits (1421), Expect = e-155
 Identities = 271/395 (68%), Positives = 326/395 (82%), Gaps = 1/395 (0%)
 Frame = -3

Query: 1182 SIEDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLT 1003
            +IEDY+KT QVYQ+IK+ GL+PDE TYNTLI+MYCRD RPEEG  +M +M   GLD KL 
Sbjct: 939  AIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLD 998

Query: 1002 TYKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLM 823
            TYKSLI+AFGK + +EQAE+LF ++  +G KLDRSFYH MMK  R +G  SK+E+LL++M
Sbjct: 999  TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMM 1058

Query: 822  QEAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDY 643
            + AGIEPT+ATMHLLM+SY SSGNP EAEKVL+NLK +   L+TL Y SVI++Y +S DY
Sbjct: 1059 KNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDY 1118

Query: 642  TVGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLLK-N 466
              GI++L+EM++EG+EPDHRIWTCF+RAAS  K   E M +L A+ D+GFDLP++LL   
Sbjct: 1119 NSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPIRLLAGR 1178

Query: 465  SESMVLEIDQVLGELKPMEDNAALNFVNAVEDLLWAFELRATASWVFQLAVKKDIYRHDV 286
             E +V E+D    +LK +EDNAALNFVNA+ +LLWAFELRATASWVFQL +K+ I+  DV
Sbjct: 1179 PELLVSEVDGWFEKLKSIEDNAALNFVNALLNLLWAFELRATASWVFQLGIKRGIFSLDV 1238

Query: 285  FRVADKDWGADFRKLSAGAALVGLTLWLDHMQDASLEGFPLSPKSVVLITGVSEYNDISL 106
            FRVADKDWGADFR+LS GAALV LTLWLDHMQDASLEG+P SPKSVVLITG +EYN ISL
Sbjct: 1239 FRVADKDWGADFRRLSGGAALVALTLWLDHMQDASLEGYPESPKSVVLITGTAEYNGISL 1298

Query: 105  NSTLKAYLWEMGSPFLPCKTRSGLLVAKAHSLRMW 1
            + TLKA LWEMGSPFLPCKTR+GLLVAKAHSLRMW
Sbjct: 1299 DKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRMW 1333



 Score = 80.9 bits (198), Expect = 6e-13
 Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 1/198 (0%)
 Frame = -3

Query: 1155 QVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAF 976
            ++   +++ GL+PD  TYNTL+    RD   +  + +  +M        L TY ++I+ +
Sbjct: 283  ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVY 342

Query: 975  GKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTI 796
            G+  +  +AE LF+++  +G+  D   Y+ ++  +    +  K +E+ + MQ+ G     
Sbjct: 343  GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402

Query: 795  ATMHLLMISYGSSGNPAEAEKVLNNLKS-SGESLSTLTYCSVIESYFKSGDYTVGIQKLM 619
             T + ++  YG  G    A ++  ++K  SG +   +TY  +I+S  K+         + 
Sbjct: 403  MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462

Query: 618  EMRREGVEPDHRIWTCFI 565
            EM   G++P  + ++  I
Sbjct: 463  EMLDVGIKPTLQTYSALI 480



 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 56/270 (20%), Positives = 123/270 (45%), Gaps = 1/270 (0%)
 Frame = -3

Query: 1176 EDYRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLD-AKLTT 1000
            E Y + +QV+  ++  G +  E    +++V+YC+   PE    ++++   +G   A    
Sbjct: 695  EHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPM 754

Query: 999  YKSLIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            Y  +I A+GK ++ ++AE +   +R+ G   D   ++ +M  Y   G + ++  +   M 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
              G  PT+ ++++L+ +    G   E   V+  L+  G  +S  +   +++++ ++G+  
Sbjct: 815  RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLLKNSE 460
               +    M+  G  P  R++   I    LCK                     K ++++E
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIEL--LCKG--------------------KRVRDAE 912

Query: 459  SMVLEIDQVLGELKPMEDNAALNFVNAVED 370
             MV E+++   +++    N+ L    A+ED
Sbjct: 913  IMVSEMEEANFKVELAIWNSMLKMYTAIED 942



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 46/230 (20%), Positives = 106/230 (46%), Gaps = 3/230 (1%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKS 991
            ++K   V   ++  G  PD  T+N+L+  Y +    E   ++ + M+++G    + +   
Sbjct: 768  WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINI 827

Query: 990  LIAAFGKLQMVEQAEELFV---KMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQ 820
            L+ A   L +  + EEL+V   +++  G+K+ +S   LM+  +   G+  + +++   M+
Sbjct: 828  LLHA---LCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMK 884

Query: 819  EAGIEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYT 640
             AG  PTI    +++          +AE +++ ++ +   +    + S+++ Y    DY 
Sbjct: 885  AAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYK 944

Query: 639  VGIQKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFD 490
              +Q    ++  G+EPD   +   I      +   E   ++  + ++G D
Sbjct: 945  KTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 51/254 (20%), Positives = 112/254 (44%), Gaps = 6/254 (2%)
 Frame = -3

Query: 1152 VYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAAFG 973
            V ++++D G K  + +   ++  + R     E   +   M   G    +  Y+ +I    
Sbjct: 844  VVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLC 903

Query: 972  KLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPTIA 793
            K + V  AE +  +M    +K++ + ++ M+K Y +   + K+ ++ + ++E G+EP   
Sbjct: 904  KGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDET 963

Query: 792  TMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGIQKLMEM 613
            T + L+I Y     P E   ++  +++ G      TY S+I ++ K        Q   E+
Sbjct: 964  TYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEEL 1023

Query: 612  RREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDLPVKLLK------NSESMV 451
              +G++ D   +   ++ +    + S+A  +L  + + G +  +  +       +S    
Sbjct: 1024 LSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNP 1083

Query: 450  LEIDQVLGELKPME 409
             E ++VL  LK  E
Sbjct: 1084 QEAEKVLSNLKDTE 1097



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 32/226 (14%)
 Frame = -3

Query: 1155 QVYQKIKD-DGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKSLIAA 979
            Q+Y+ +K   G  PD  TY  LI    +  R  E  ++M EM+  G+   L TY +LI  
Sbjct: 423  QLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICG 482

Query: 978  FGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAGIEPT 799
            + K    E+AE+ F  M R G K D   Y +M+          K+  L + M   G  P+
Sbjct: 483  YAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPS 542

Query: 798  IATMHLLMISYGSSGNPAEAEKVLNNLK-------------------------------S 712
                 L+++         + +K + +++                               +
Sbjct: 543  YTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAIT 602

Query: 711  SGESLSTLTYCSVIESYFKSGDYTVGIQKLMEMRREGVEPDHRIWT 574
            +G  L   T  S++ SY  SG ++   + L+E  +E      R+ T
Sbjct: 603  NGYELENDTLLSILGSYSSSGRHSEAFE-LLEFLKEHASGSKRLIT 647



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 44/228 (19%), Positives = 95/228 (41%)
 Frame = -3

Query: 1170 YRKTAQVYQKIKDDGLKPDEDTYNTLIVMYCRDCRPEEGLSMMHEMVKEGLDAKLTTYKS 991
            Y +   ++  +  DG  P  ++ N L+   C D R EE   ++ E+   G     ++   
Sbjct: 803  YERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILL 862

Query: 990  LIAAFGKLQMVEQAEELFVKMRREGYKLDRSFYHLMMKTYRSTGHHSKSEELLKLMQEAG 811
            ++ AF +   + + ++++  M+  GY      Y +M++          +E ++  M+EA 
Sbjct: 863  MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922

Query: 810  IEPTIATMHLLMISYGSSGNPAEAEKVLNNLKSSGESLSTLTYCSVIESYFKSGDYTVGI 631
             +  +A  + ++  Y +  +  +  +V   +K +G      TY ++I  Y +      G 
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 630  QKLMEMRREGVEPDHRIWTCFIRAASLCKTASEAMTILNAIGDVGFDL 487
              + +MR  G++P    +   I A    K   +A  +   +   G  L
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKL 1030