BLASTX nr result

ID: Atractylodes21_contig00031576 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00031576
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523971.1| Heterochromatin protein, putative [Ricinus c...    47   2e-09
ref|XP_002319745.1| chromodomain protein [Populus trichocarpa] g...    49   4e-07
ref|XP_002325456.1| chromo domain protein [Populus trichocarpa] ...    47   8e-07

>ref|XP_002523971.1| Heterochromatin protein, putative [Ricinus communis]
           gi|223536698|gb|EEF38339.1| Heterochromatin protein,
           putative [Ricinus communis]
          Length = 462

 Score = 46.6 bits (109), Expect(2) = 2e-09
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -1

Query: 81  PETANTWKLVENLMSCSDVSDAFEESM 1
           PE ANTW+ +ENL SCSDV DAFEES+
Sbjct: 144 PEAANTWEPLENLQSCSDVIDAFEESL 170



 Score = 39.7 bits (91), Expect(2) = 2e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -2

Query: 296 KSSC*LDDS----NNNGKECDKNKDDNYK*HINQVGNVDIQRVLKIMVSKEHL*LMEGFH 129
           K  C LD +    NNN  E D++ DDN         + + ++  +  V +E   L EGF 
Sbjct: 60  KKDCVLDTTTSTVNNNNVEEDEDDDDNDNEEEEDDDDEEEEKKGEGGVEEERPKLDEGFF 119

Query: 128 EIEVVHKKRIRKG 90
           EIE + +KR+RKG
Sbjct: 120 EIEAIRRKRVRKG 132


>ref|XP_002319745.1| chromodomain protein [Populus trichocarpa]
           gi|222858121|gb|EEE95668.1| chromodomain protein
           [Populus trichocarpa]
          Length = 438

 Score = 48.5 bits (114), Expect(2) = 4e-07
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = -1

Query: 81  PETANTWKLVENLMSCSDVSDAFEESM 1
           PETANTW+ +ENL SCSDV DAFEES+
Sbjct: 119 PETANTWEPLENLQSCSDVIDAFEESL 145



 Score = 30.4 bits (67), Expect(2) = 4e-07
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 170 MVSKEHL*LMEGFHEIEVVHKKRIRKG 90
           +  +E   L EGF EIE + +KR+RKG
Sbjct: 81  LFDEERTKLDEGFFEIEAIRRKRVRKG 107


>ref|XP_002325456.1| chromo domain protein [Populus trichocarpa]
           gi|222862331|gb|EEE99837.1| chromo domain protein
           [Populus trichocarpa]
          Length = 435

 Score = 47.4 bits (111), Expect(2) = 8e-07
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = -1

Query: 81  PETANTWKLVENLMSCSDVSDAFEESM 1
           PETANTW+ +ENL SC+DV DAFEES+
Sbjct: 119 PETANTWEPLENLQSCADVIDAFEESL 145



 Score = 30.4 bits (67), Expect(2) = 8e-07
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 170 MVSKEHL*LMEGFHEIEVVHKKRIRKG 90
           +  +E   L EGF EIE + +KR+RKG
Sbjct: 81  LFDEERTKLDEGFFEIEAIRRKRVRKG 107


Top