BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00029869
         (1409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containi...   478   e-132
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   446   e-123
ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   426   e-117
ref|XP_002876469.1| pentatricopeptide repeat-containing protein ...   421   e-115
ref|NP_191418.2| pentatricopeptide repeat-containing protein [Ar...   412   e-112

>ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like
            [Vitis vinifera]
          Length = 921

 Score =  478 bits (1229), Expect = e-132
 Identities = 234/379 (61%), Positives = 291/379 (76%)
 Frame = -1

Query: 1409 AKCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVLLLREMIQLGISLNEISFSS 1230
            AKCD L+ AH CFDEI EK+++ WNAL+LGYSN+ C +SV LL+ M+QLG   NE SFS+
Sbjct: 401  AKCDNLESAHCCFDEIDEKNVVCWNALILGYSNK-CFSSVSLLKRMLQLGYCPNEFSFSA 459

Query: 1229 VIKSLLALELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
             +KS L  EL+++H L+++MGY  NEYV+SAL+TSYAKNG+++DAL F   +  P  V  
Sbjct: 460  ALKSSLVFELQQLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLVGP 519

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
            SN IAG+YN+ GQY +TQ+LF  +E+PDIVSWNILIAAC+RNGDYKE FELF+HMQM QI
Sbjct: 520  SNAIAGVYNKIGQYHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMAQI 579

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
             PDNYT VSLLS+CTKLCNLALGSS+HG I K DF  CD  V NV+IDMYGKCG + SS+
Sbjct: 580  YPDNYTVVSLLSVCTKLCNLALGSSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIESSL 639

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +F+++ E+N+I+WTAL+S            + FREME LG +PD +A +A  SACRH G
Sbjct: 640  KIFNKIIERNIITWTALISALGVNGYANEALKLFREMESLGFKPDGVALVAVFSACRHGG 699

Query: 509  LVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSF 330
            LVKEGMELF QMK+  GIEP ++HY  VVDL+AR GHL+EAEQ+IS MPFPPNA IWRSF
Sbjct: 700  LVKEGMELFWQMKKSCGIEPNIDHYHCVVDLLARCGHLQEAEQVISNMPFPPNALIWRSF 759

Query: 329  LDGCNRQRTVEHLSLQFQA 273
            L+GC R +T E+    F A
Sbjct: 760  LEGCKRWKTAENQESIFLA 778



 Score =  124 bits (312), Expect = 5e-26
 Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 5/288 (1%)
 Frame = -1

Query: 1373 FDEILEKDLISWNALLLGYSNRGCST-SVLLLREMIQLGISLNEISFSSVIKSLLA---L 1206
            F+E+ +K+L++WN ++  + N G S  S+ L RE+++ G  L+E SF  V+    +   L
Sbjct: 211  FEEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSGFASEQDL 270

Query: 1205 ELKE-VHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVHSNVIAGL 1029
            EL E VH L++K G+     V ++L+  Y K   +  A   FE                 
Sbjct: 271  ELGEQVHDLLIKNGFDCEVSVLNSLINMYVKCSCICLAEKMFE----------------- 313

Query: 1028 YNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQILPDNYTY 849
                        L C     D+VSWN +I A +++    +  ELF  M +D +LP+  T+
Sbjct: 314  ------------LGCV---RDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTF 358

Query: 848  VSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSVLMFDEMK 669
            VS+++ CT L  L  G  +H  + +      ++ V + ++D Y KC +L S+   FDE+ 
Sbjct: 359  VSVINSCTNLQILVFGEYIHAKVIRNKIE-SNVFVGSALVDFYAKCDNLESAHCCFDEID 417

Query: 668  EKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSA 525
            EKNV+ W AL+                + M  LG  P++ +F AAL +
Sbjct: 418  EKNVVCWNALI--LGYSNKCFSSVSLLKRMLQLGYCPNEFSFSAALKS 463



 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 78/342 (22%), Positives = 160/342 (46%), Gaps = 6/342 (1%)
 Frame = -1

Query: 1394 LDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVL-LLREMIQLGISLNEISFSSVIKS 1218
            L  A + F E+ +++++S+N ++ GYS  G       L  EM + G    + +F+ ++ S
Sbjct: 104  LSTARKVFGEMTQRNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAGLL-S 162

Query: 1217 LLALELKEVHSL---VVKMG-YHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
              +L+L +   L   +VK G +H + Y  +AL++ + +NG + + +  FE          
Sbjct: 163  CASLKLSQGFQLQAQMVKSGLFHADPYAGTALLSLFGRNGCIDEVVCAFE---------- 212

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
                                  E+   ++V+WN +I+     G  +E+  LF+ +     
Sbjct: 213  ----------------------EMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGA 250

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
                 +++ +LS      +L LG  +H L+ K  F+C ++ V N +I+MY KC  +  + 
Sbjct: 251  GLSECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDC-EVSVLNSLINMYVKCSCICLAE 309

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             MF+    ++V+SW  ++             E F +M + G+ P++  F++ +++C ++ 
Sbjct: 310  KMFELGCVRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQ 369

Query: 509  LVKEGMELF-KQMKEKYGIEPQMEHYRLVVDLMARNGHLKEA 387
            ++  G  +  K ++ K  IE  +     +VD  A+  +L+ A
Sbjct: 370  ILVFGEYIHAKVIRNK--IESNVFVGSALVDFYAKCDNLESA 409



 Score = 82.0 bits (201), Expect = 3e-13
 Identities = 57/215 (26%), Positives = 96/215 (44%)
 Frame = -1

Query: 1046 NVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQIL 867
            N +  LY   G+    +++F E+   ++VS+N +I   SRNG  +EA+ LF  M+     
Sbjct: 92   NNLISLYVLQGELSTARKVFGEMTQRNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFE 151

Query: 866  PDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSVL 687
            P  +T+  LLS C  L  L+ G  L   + K+     D      ++ ++G+ G +   V 
Sbjct: 152  PTQHTFAGLLS-CASL-KLSQGFQLQAQMVKSGLFHADPYAGTALLSLFGRNGCIDEVVC 209

Query: 686  MFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVGL 507
             F+EM +KN+++W  ++S              FRE+   G         A LS C  +G+
Sbjct: 210  AFEEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTG---------AGLSECSFMGV 260

Query: 506  VKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNG 402
            +             +  E  +E    V DL+ +NG
Sbjct: 261  L-----------SGFASEQDLELGEQVHDLLIKNG 284


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
            predicted protein [Populus trichocarpa]
          Length = 737

 Score =  446 bits (1146), Expect = e-123
 Identities = 214/371 (57%), Positives = 285/371 (76%)
 Frame = -1

Query: 1409 AKCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVLLLREMIQLGISLNEISFSS 1230
            AKC  LD AH CF EI +K+++SWN+L+LGY+N+    SV LL EM++LG   NE SFS+
Sbjct: 361  AKCGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFASVSLLLEMLKLGFRPNEFSFSA 420

Query: 1229 VIKSLLALELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
            V+KS L LELK++HSL +++GY  NEYV ++L+TSY +NGL+ DAL F + ++   +VV 
Sbjct: 421  VLKSSLVLELKQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLLAVVP 480

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
            +N IAG+YNRSGQY +T +   ++E+PD VSWNI+IAAC+RNG+Y E FELF+HM++ Q+
Sbjct: 481  ANSIAGIYNRSGQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVAQM 540

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
            LPDNYTY SLL + +K+CNLALGSS+HGL+ K +F+  DI+V NV+IDMYGKCG+L SS 
Sbjct: 541  LPDNYTYTSLLCVSSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSA 600

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +FD M E+N+I+WTAL+S            ERF +ME LG  PDK+AFIA L+ACRH  
Sbjct: 601  KIFDSMTERNLITWTALISALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRHGA 660

Query: 509  LVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSF 330
            LV+EGM+LF +M   Y IEP M+HY  +VDL+ARNGHL+EAE++IS MPFPP+A IWRSF
Sbjct: 661  LVREGMQLFGKM-NNYHIEPDMDHYHCLVDLLARNGHLEEAEKVISCMPFPPDAQIWRSF 719

Query: 329  LDGCNRQRTVE 297
            L+GC ++R  E
Sbjct: 720  LEGCKKRRNTE 730



 Score =  127 bits (318), Expect = 9e-27
 Identities = 96/368 (26%), Positives = 173/368 (47%), Gaps = 12/368 (3%)
 Frame = -1

Query: 1406 KCDILDCAHRCFDEILEKDLISWNALLLGYSNRG-CSTSVLLLREMIQLGISLNEISFSS 1230
            +C  LD A   F+++ +K L++WN+++    + G     V+L R++++   SL++ SF  
Sbjct: 160  RCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLSKCSFEG 219

Query: 1229 VIKSLLALELKE----VHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPH 1062
            V+  L+  E  E    +H LV+K G      V+++L+  YA+   ++             
Sbjct: 220  VLSGLVCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMS------------- 266

Query: 1061 SVVHSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQ 882
                               + ++LF EV+  D+V+WN +I+A S++ +  +A E+F  M 
Sbjct: 267  -------------------QVEKLFEEVDGRDVVTWNTIISAFSKSKNPGKALEVFLKMS 307

Query: 881  MDQILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSL 702
             D I+P+  T+VS+++ CT L     G  +HG I K      D+ + + ++D Y KCG L
Sbjct: 308  EDGIMPNQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALE-TDVYLGSALVDYYAKCGKL 366

Query: 701  HSSVLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSAC 522
             ++   F E+ +KNV+SW +L+                 EM  LG  P++ +F A L + 
Sbjct: 367  DNAHYCFREIHQKNVVSWNSLI-LGYANKCSFASVSLLLEMLKLGFRPNEFSFSAVLKS- 424

Query: 521  RHVGLVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNG-------HLKEAEQLISGMP 363
                LV E ++    +  + G E        ++    RNG        +K +E L++ +P
Sbjct: 425  ---SLVLE-LKQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLLAVVP 480

Query: 362  FPPNASIW 339
                A I+
Sbjct: 481  ANSIAGIY 488



 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 89/406 (21%), Positives = 172/406 (42%), Gaps = 3/406 (0%)
 Frame = -1

Query: 1385 AHRCFDEILEKDLISWNALLLGYSNRG-CSTSVLLLREMIQLGISLNEISFSSVIKSLLA 1209
            AH+ FD +  ++ +S+N+++  +S  G    +     EMI  G   N  + S ++     
Sbjct: 67   AHKVFDNMPHRNKVSYNSIISCFSKYGYLEEAWRTFCEMIDCGFRPNNFTLSGLLSCA-- 124

Query: 1208 LELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVHSNVIAGL 1029
                   S+ V  G  L             KNGL                V     + GL
Sbjct: 125  -------SMDVGRGIMLQALAI--------KNGLFCS------------DVFVGTALLGL 157

Query: 1028 YNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQILPDNYTY 849
            + R G   +   +F ++ D  +V+WN +I+    +G  ++   LF+ +   +      ++
Sbjct: 158  FGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLSKCSF 217

Query: 848  VSLLS--ICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSVLMFDE 675
              +LS  +C +  +L  G  +HGL+ K+  +C ++LV N +I+MY +  S+     +F+E
Sbjct: 218  EGVLSGLVCEE--DLEFGGQIHGLVIKSGLDC-EVLVSNSLINMYARRSSMSQVEKLFEE 274

Query: 674  MKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVGLVKEG 495
            +  ++V++W  ++S            E F +M   GI P++  F++ +++C  + LV   
Sbjct: 275  VDGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSL-LVPMC 333

Query: 494  MELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSFLDGCN 315
             E       K  +E  +     +VD  A+ G L  A      +    N   W S + G  
Sbjct: 334  GEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCFREI-HQKNVVSWNSLILGYA 392

Query: 314  RQRTVEHLSLQFQAC*SQHRVGERRWVENCVVTKLIWLVIQRIHMI 177
             + +   +SL  +      R  E  +  + V+   + L +++IH +
Sbjct: 393  NKCSFASVSLLLEMLKLGFRPNEFSF--SAVLKSSLVLELKQIHSL 436



 Score = 72.4 bits (176), Expect = 3e-10
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 4/230 (1%)
 Frame = -1

Query: 1055 VHSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMD 876
            V++N+I+  Y    Q     ++F  +   + VS+N +I+  S+ G  +EA+  F  M   
Sbjct: 50   VYNNIIS-FYASFNQVPMAHKVFDNMPHRNKVSYNSIISCFSKYGYLEEAWRTFCEMIDC 108

Query: 875  QILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHS 696
               P+N+T   LLS C  + ++  G  L  L  K    C D+ V   ++ ++G+CG L  
Sbjct: 109  GFRPNNFTLSGLLS-CASM-DVGRGIMLQALAIKNGLFCSDVFVGTALLGLFGRCGWLDE 166

Query: 695  SVLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRH 516
            +  +F++M +K++++W +++S              FR++        K +F   LS    
Sbjct: 167  AFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSLSKCSFEGVLS---- 222

Query: 515  VGLV-KEGMELFKQMKE---KYGIEPQMEHYRLVVDLMARNGHLKEAEQL 378
             GLV +E +E   Q+     K G++ ++     ++++ AR   + + E+L
Sbjct: 223  -GLVCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKL 271


>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  426 bits (1096), Expect = e-117
 Identities = 204/371 (54%), Positives = 281/371 (75%)
 Frame = -1

Query: 1409 AKCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVLLLREMIQLGISLNEISFSS 1230
            AKCD LD A  CF +I EK+++SWN+L+LG +N+    ++ LL EM+Q G   NE SFS+
Sbjct: 362  AKCDKLDDARCCFVKIHEKNVVSWNSLILGCANKCPYAAISLLVEMLQCGYQPNEFSFSA 421

Query: 1229 VIKSLLALELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
            V+ S   LEL+++H L+++MGY  N+YV S+L+TSY +NGL++DAL F   ++ P + V 
Sbjct: 422  VLISSSILELQQLHCLIIRMGYDNNDYVLSSLITSYGRNGLISDALVFLAASETPLAAVP 481

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
            SN +AG+YN++G Y KT EL  ++E+PD VSWNI IAAC+RNG+YKE FELF+ M + QI
Sbjct: 482  SNNVAGIYNKAGHYYKTLELLSQLEEPDNVSWNIAIAACARNGNYKEVFELFKQMLVAQI 541

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
             PDNYTYVSLLS  +++C+LALGSS+HG + K +F+ CD  VCNV++DMYGKCG L SSV
Sbjct: 542  HPDNYTYVSLLSSSSQICDLALGSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRSSV 601

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +F+ M+++N+I+WTAL+S            ERF++ME  G+ PDK+AFIA L+ACRH  
Sbjct: 602  KIFNSMRDRNLITWTALISALGINSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRHGA 661

Query: 509  LVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSF 330
            LV EG+ELFK+MK  YG+EP+M+HY  +VDL +R+GH+KEAE++IS MP PPNA IWR+F
Sbjct: 662  LVGEGIELFKKMK-SYGLEPEMDHYHCLVDLFSRHGHVKEAEKVISSMPCPPNALIWRTF 720

Query: 329  LDGCNRQRTVE 297
            L+GC + R+ E
Sbjct: 721  LEGCKKYRSKE 731



 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 6/294 (2%)
 Frame = -1

Query: 1394 LDCAHRCFDEILEKDLISWNALLLGYSNRG-CSTSVLLLREMI-QLGISLNEISFSSVIK 1221
            L+ A   F+++  K L++WN+++  +   G     ++   E+  ++G  L+E SF  V+ 
Sbjct: 164  LNEALHVFEDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHREIGCCLSECSFVGVLS 223

Query: 1220 SLLA---LELKE-VHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVV 1053
             L+    LE  E +HSLV K G+     V +++++ Y K   +  A   FE+A       
Sbjct: 224  GLVCGKYLEFGEQIHSLVTKTGFDYTVSVVNSVISVYVKCATLHLAEKKFEEAA------ 277

Query: 1052 HSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQ 873
                                  C+    DIV+WN +I A +++    +A ELF  M  D 
Sbjct: 278  ----------------------CK----DIVTWNTMIVALAKSEKPIKALELFFKMPRDA 311

Query: 872  ILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSS 693
            I P+  T+ SL+S C  L        +H  +    F+  D+ V + ++D Y KC  L  +
Sbjct: 312  IRPNQITFASLISSCANLQIPMYAEFIHAKVIMHAFD-TDVYVGSALVDYYAKCDKLDDA 370

Query: 692  VLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAAL 531
               F ++ EKNV+SW +L+                 EM   G +P++ +F A L
Sbjct: 371  RCCFVKIHEKNVVSWNSLI-LGCANKCPYAAISLLVEMLQCGYQPNEFSFSAVL 423



 Score = 82.4 bits (202), Expect = 3e-13
 Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 7/318 (2%)
 Frame = -1

Query: 1406 KCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVL-LLREMIQLGISLNEISFSS 1230
            KC  L  A + F+E   KD+++WN +++  +        L L  +M +  I  N+I+F+S
Sbjct: 262  KCATLHLAEKKFEEAACKDIVTWNTMIVALAKSEKPIKALELFFKMPRDAIRPNQITFAS 321

Query: 1229 VIKSLLALEL----KEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPH 1062
            +I S   L++    + +H+ V+   +  + YV SAL+  YAK   + DA           
Sbjct: 322  LISSCANLQIPMYAEFIHAKVIMHAFDTDVYVGSALVDYYAKCDKLDDA----------- 370

Query: 1061 SVVHSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQ 882
                                 +  F ++ + ++VSWN LI  C+    Y  A  L   M 
Sbjct: 371  ---------------------RCCFVKIHEKNVVSWNSLILGCANKCPY-AAISLLVEML 408

Query: 881  MDQILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSL 702
                 P+ +++ ++L I + +  L     LH LI +  ++  D  V + +I  YG+ G L
Sbjct: 409  QCGYQPNEFSFSAVL-ISSSILEL---QQLHCLIIRMGYDNND-YVLSSLITSYGRNG-L 462

Query: 701  HSSVLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLG--IEPDKIAFIAALS 528
             S  L+F    E  +    A V               ++ +E+L    EPD +++  A++
Sbjct: 463  ISDALVFLAASETPL----AAVPSNNVAGIYNKAGHYYKTLELLSQLEEPDNVSWNIAIA 518

Query: 527  ACRHVGLVKEGMELFKQM 474
            AC   G  KE  ELFKQM
Sbjct: 519  ACARNGNYKEVFELFKQM 536



 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 35/137 (25%), Positives = 74/137 (54%)
 Frame = -1

Query: 1046 NVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQIL 867
            N I  LY    +    +++F  +    I S+N +I +  + G  +EA  +F  M+     
Sbjct: 52   NNIISLYTSFSELSLARKVFDNMPQRSIASYNSIITSYCKYGYLEEALGVFSRMRDCGFR 111

Query: 866  PDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSVL 687
            P+N+T   LLS C+K+ +L++G  L  L  K      D  V   +++++G+ G L+ ++ 
Sbjct: 112  PNNFTLSGLLS-CSKM-DLSIGLQLQALAMKNGLFYIDAFVGTALLNVFGRWGWLNEALH 169

Query: 686  MFDEMKEKNVISWTALV 636
            +F+++  K++++W +++
Sbjct: 170  VFEDLPIKSLVTWNSII 186


>ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297322307|gb|EFH52728.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 741

 Score =  421 bits (1083), Expect = e-115
 Identities = 199/366 (54%), Positives = 273/366 (74%)
 Frame = -1

Query: 1409 AKCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVLLLREMIQLGISLNEISFSS 1230
            AKC  L+ +H CFD I +K+++ WNALL GYSN+     + L  +M+Q+G    E +FS+
Sbjct: 362  AKCGSLEDSHLCFDYIRDKNIVCWNALLSGYSNKDGPICLSLFLQMLQMGFRPTEYTFST 421

Query: 1229 VIKSLLALELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
             +KS    EL+++HS++V+MGY  N+YV S+LM SYAKN L++DAL   + A  P SVV 
Sbjct: 422  TLKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMSDALFLLDWASGPTSVVP 481

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
             N++AG+Y+R GQY ++ +L   +E PD VSWNI IAACSR+ ++ E  +LF+HM    I
Sbjct: 482  LNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDNHGEVIDLFKHMLQSNI 541

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
             PDNYT+VS+LS+C+KLC+L LGSS+HGLITK DF+C D  VCNV+IDMYGKCGS+ S +
Sbjct: 542  RPDNYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCVDTFVCNVLIDMYGKCGSIRSVI 601

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +F+E +EKN+I+WTAL+S            E+F+E   LG +PD+++FI+ L+ACRH G
Sbjct: 602  KVFEETREKNLITWTALISSLGIYGYGHEALEKFKETLSLGFKPDRVSFISILTACRHGG 661

Query: 509  LVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSF 330
            +VKEGM+LF++MK+ YGIEP+M+HYR  VDL+ARNG+LKEAE LI  MPFP +A +WR+F
Sbjct: 662  MVKEGMDLFQKMKD-YGIEPEMDHYRCAVDLLARNGYLKEAEHLIHRMPFPADAPVWRTF 720

Query: 329  LDGCNR 312
            LDGCNR
Sbjct: 721  LDGCNR 726



 Score =  117 bits (293), Expect = 7e-24
 Identities = 98/399 (24%), Positives = 171/399 (42%), Gaps = 34/399 (8%)
 Frame = -1

Query: 1406 KCDILDCAHRCFDEILEKDLISWNALLLGYSNRG-CSTSVLLLREMIQLGISLNEISFSS 1230
            + ++L+ A + F+++  K L +WN ++    + G     + L RE++ +G  L E S   
Sbjct: 161  RLELLEMAEQVFEDMPFKSLETWNHMMSLLGHHGFLKECMFLFRELVGMGACLTESSLLG 220

Query: 1229 VIKSLLA---LEL-KEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPH 1062
            V+K +     LE+ K++H    K G      V ++L+++Y K G                
Sbjct: 221  VLKGVSCENDLEISKQLHCSATKQGLDCEISVVNSLISAYGKCG---------------- 264

Query: 1061 SVVHSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQ 882
               ++++   ++  +G +             DIVSWN +I A +++ +  +  +LF  M 
Sbjct: 265  ---NTHMAERMFQEAGSW-------------DIVSWNAIIGATAKSENPLKTLKLFVSMP 308

Query: 881  MDQILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCC--DILVCNVMIDMYGKCG 708
                 P+  TY+S+L   +    L+ G  +HG++ K   N C  DI + N +ID Y KCG
Sbjct: 309  EHGFSPNQGTYISVLGASSLRQLLSFGRQIHGMLIK---NGCKTDIFLGNALIDFYAKCG 365

Query: 707  SLHSSVLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALS 528
            SL  S L FD +++KN++ W AL+S              F +M  +G  P +  F   L 
Sbjct: 366  SLEDSHLCFDYIRDKNIVCWNALLSGYSNKDGPICLSL-FLQMLQMGFRPTEYTFSTTLK 424

Query: 527  AC-------RHVGLVKEGME----LFKQMKEKYGIEPQMEH----------------YRL 429
            +C        H  +V+ G E    +   +   Y     M                    +
Sbjct: 425  SCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMSDALFLLDWASGPTSVVPLNI 484

Query: 428  VVDLMARNGHLKEAEQLISGMPFPPNASIWRSFLDGCNR 312
            V  + +R G   E+ +LIS +  P   S W   +  C+R
Sbjct: 485  VAGIYSRRGQYHESVKLISTLEQPDTVS-WNIAIAACSR 522



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 8/232 (3%)
 Frame = -1

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
            SN I  LY + G+     ++F ++ + + VS+N +I   S+ GD ++A+ +   M+    
Sbjct: 52   SNNIICLYEKLGEVSLAGKVFDQMPERNKVSFNTIINGYSKYGDAEKAWGVLSEMRYFGY 111

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
            LP+  T   LLS C  L ++  G+ LHGL  K      D  V   ++  YG+   L  + 
Sbjct: 112  LPNQSTVSGLLS-CASL-DIRAGTQLHGLSLKYGLFMADAYVGTCLLCFYGRLELLEMAE 169

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +F++M  K++ +W  ++S              FRE+  +G         A L+    +G
Sbjct: 170  QVFEDMPFKSLETWNHMMSLLGHHGFLKECMFLFRELVGMG---------ACLTESSLLG 220

Query: 509  LVK-----EGMELFKQM---KEKYGIEPQMEHYRLVVDLMARNGHLKEAEQL 378
            ++K       +E+ KQ+     K G++ ++     ++    + G+   AE++
Sbjct: 221  VLKGVSCENDLEISKQLHCSATKQGLDCEISVVNSLISAYGKCGNTHMAERM 272


>ref|NP_191418.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|218525906|sp|Q0WN01.2|PP286_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g58590 gi|332646281|gb|AEE79802.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  412 bits (1058), Expect = e-112
 Identities = 196/366 (53%), Positives = 269/366 (73%)
 Frame = -1

Query: 1409 AKCDILDCAHRCFDEILEKDLISWNALLLGYSNRGCSTSVLLLREMIQLGISLNEISFSS 1230
            AKC  L+ +  CFD I +K+++ WNALL GY+N+     + L  +M+Q+G    E +FS+
Sbjct: 362  AKCGNLEDSRLCFDYIRDKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFST 421

Query: 1229 VIKSLLALELKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPHSVVH 1050
             +KS    EL+++HS++V+MGY  N+YV S+LM SYAKN L+ DAL   + A  P SVV 
Sbjct: 422  ALKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVP 481

Query: 1049 SNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQI 870
             N++AG+Y+R GQY ++ +L   +E PD VSWNI IAACSR+  ++E  ELF+HM    I
Sbjct: 482  LNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNI 541

Query: 869  LPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSV 690
             PD YT+VS+LS+C+KLC+L LGSS+HGLITK DF+C D  VCNV+IDMYGKCGS+ S +
Sbjct: 542  RPDKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVM 601

Query: 689  LMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVG 510
             +F+E +EKN+I+WTAL+S            E+F+E   LG +PD+++FI+ L+ACRH G
Sbjct: 602  KVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGG 661

Query: 509  LVKEGMELFKQMKEKYGIEPQMEHYRLVVDLMARNGHLKEAEQLISGMPFPPNASIWRSF 330
            +VKEGM LF++MK+ YG+EP+M+HYR  VDL+ARNG+LKEAE LI  MPFP +A +WR+F
Sbjct: 662  MVKEGMGLFQKMKD-YGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTF 720

Query: 329  LDGCNR 312
            LDGCNR
Sbjct: 721  LDGCNR 726



 Score =  130 bits (328), Expect = 6e-28
 Identities = 105/399 (26%), Positives = 178/399 (44%), Gaps = 34/399 (8%)
 Frame = -1

Query: 1406 KCDILDCAHRCFDEILEKDLISWNALLLGYSNRG-CSTSVLLLREMIQLGISLNEISFSS 1230
            + D+L+ A + F+++  K L +WN ++    +RG     +   RE++++G SL E SF  
Sbjct: 161  RLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLG 220

Query: 1229 VIKSLLALE----LKEVHSLVVKMGYHLNEYVTSALMTSYAKNGLVADALSFFEDAKMPH 1062
            V+K +  ++     K++H    K G      V ++L+++Y K G    A   F+DA    
Sbjct: 221  VLKGVSCVKDLDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDA---- 276

Query: 1061 SVVHSNVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQ 882
                           G +             DIVSWN +I A +++ +  +A +LF  M 
Sbjct: 277  ---------------GSW-------------DIVSWNAIICATAKSENPLKALKLFVSMP 308

Query: 881  MDQILPDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCD--ILVCNVMIDMYGKCG 708
                 P+  TYVS+L + + +  L+ G  +HG++ K   N C+  I++ N +ID Y KCG
Sbjct: 309  EHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLIK---NGCETGIVLGNALIDFYAKCG 365

Query: 707  SLHSSVLMFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALS 528
            +L  S L FD +++KN++ W AL+S              F +M  +G  P +  F  AL 
Sbjct: 366  NLEDSRLCFDYIRDKNIVCWNALLSGYANKDGPICLSL-FLQMLQMGFRPTEYTFSTALK 424

Query: 527  AC-------RHVGLVKEGME----LFKQMKEKYGIEPQMEHYRLVVD------------- 420
            +C        H  +V+ G E    +   +   Y     M    L++D             
Sbjct: 425  SCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNI 484

Query: 419  ---LMARNGHLKEAEQLISGMPFPPNASIWRSFLDGCNR 312
               + +R G   E+ +LIS +  P   S W   +  C+R
Sbjct: 485  VAGIYSRRGQYHESVKLISTLEQPDTVS-WNIAIAACSR 522



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 3/226 (1%)
 Frame = -1

Query: 1046 NVIAGLYNRSGQYLKTQELFCEVEDPDIVSWNILIAACSRNGDYKEAFELFQHMQMDQIL 867
            N I  LY + G+     ++F ++ + + VS+N +I   S+ GD  +A+ +F  M+    L
Sbjct: 53   NNIISLYEKLGEVSLAGKVFDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYL 112

Query: 866  PDNYTYVSLLSICTKLCNLALGSSLHGLITKADFNCCDILVCNVMIDMYGKCGSLHSSVL 687
            P+  T   LLS C  L ++  G+ LHGL  K      D  V   ++ +YG+   L  +  
Sbjct: 113  PNQSTVSGLLS-CASL-DVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQ 170

Query: 686  MFDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVGL 507
            +F++M  K++ +W  ++S              FRE+  +G    + +F+  L   + V  
Sbjct: 171  VFEDMPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVL---KGVSC 227

Query: 506  VKEGMELFKQM---KEKYGIEPQMEHYRLVVDLMARNGHLKEAEQL 378
            VK+ +++ KQ+     K G++ ++     ++    + G+   AE++
Sbjct: 228  VKD-LDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERM 272



 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
 Frame = -1

Query: 860 NYTYVSLLSICTKLCNLALGSSLHGL-ITKADFNCCDILVCNVMIDMYGKCGSLHSSVLM 684
           N   VSLL++C K  + A   +LH L IT        + VCN +I +Y K G +  +  +
Sbjct: 12  NDRVVSLLNVCRKAPSFARTKALHALSITLCSVLLQPVYVCNNIISLYEKLGEVSLAGKV 71

Query: 683 FDEMKEKNVISWTALVSXXXXXXXXXXXXERFREMEMLGIEPDKIAFIAALSACRHVGLV 504
           FD+M E+N +S+  ++               F EM   G  P++ + ++ L +C  +  V
Sbjct: 72  FDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQ-STVSGLLSCASLD-V 129

Query: 503 KEGMELFKQMKEKYGIEPQMEHY-RLVVDLMARNGHLKEAEQLISGMPF 360
           + G +L   +  KYG+          ++ L  R   L+ AEQ+   MPF
Sbjct: 130 RAGTQL-HGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPF 177