BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00029828
         (655 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|2...   248   5e-64
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi...   245   6e-63
emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]   245   6e-63
ref|XP_002513372.1| pentatricopeptide repeat-containing protein,...   243   2e-62
ref|XP_002883266.1| pentatricopeptide repeat-containing protein ...   181   8e-44

>ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|222853575|gb|EEE91122.1|
           predicted protein [Populus trichocarpa]
          Length = 551

 Score =  248 bits (634), Expect = 5e-64
 Identities = 126/218 (57%), Positives = 164/218 (75%)
 Frame = +1

Query: 1   LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
           LHSKCGKMEDA Y+F +M  +D+VSWN++IG +AV+ FS D+ RMFR M++EGM+PD FT
Sbjct: 142 LHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFT 201

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
              VL AS    D+  V Q+H  +++ G+ S+ SL+GSLI+AYAK  S+ SA  +YK++ 
Sbjct: 202 FGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMP 261

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
            KD ISCTAL+TGYAR+ + S  A++LF E+ Q+ M ID+VILCSM NICAN +SLS+GR
Sbjct: 262 MKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGR 321

Query: 541 QIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
           QIH L+LK    +DV M NALIDMY+KSGEI DA R F
Sbjct: 322 QIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAF 359



 Score = 85.1 bits (209), Expect = 1e-14
 Identities = 58/213 (27%), Positives = 103/213 (48%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTL 183
           +SK G    A  +F+ M  + +VSW++ I G++      DA+ +F  MLR G   + FT 
Sbjct: 42  YSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTY 101

Query: 184 ACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIE 363
             VL A    + L    Q+ G + KS F S   +  +L++ ++K G +  A  ++  + E
Sbjct: 102 GSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEE 161

Query: 364 KDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQ 543
           +D +S  A+I  YA +G +   +  +F  + Q  M+ D     S++      + +    Q
Sbjct: 162 RDVVSWNAIIGAYAVQGFSG-DSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQ 220

Query: 544 IHNLSLKRLACHDVPMSNALIDMYSKSGEIVDA 642
           IH L ++      + +S +LID Y+K   +  A
Sbjct: 221 IHQLIIQLGYGSHISLSGSLIDAYAKCESLASA 253



 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 53/215 (24%), Positives = 109/215 (50%), Gaps = 2/215 (0%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRW-FSNDAIRMFRLMLREGMTPDNFT 180
           ++KC  +  A+ ++  M  KD++S  +++ G+A    +S+ A+ +F+ + +  M  D+  
Sbjct: 244 YAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVI 303

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
           L  +    A    LS   Q+H   LK       ++  +LI+ YAKSG ++ A+R +  + 
Sbjct: 304 LCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEME 363

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
           EK+ IS T+LITGY   G +   A+ LF ++    +  +++   S++  C +      G 
Sbjct: 364 EKNVISWTSLITGYGSHG-HGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGW 422

Query: 541 Q-IHNLSLKRLACHDVPMSNALIDMYSKSGEIVDA 642
           +  +N+  K          + ++D++++ G + +A
Sbjct: 423 ECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEA 457



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 38/139 (27%), Positives = 72/139 (51%)
 Frame = +1

Query: 238 LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKDTISCTALITGYAREGS 417
           +H  +L +GF S   L+  LI  Y+K G   SA +++  + E+  +S +A I+GY++ G 
Sbjct: 19  IHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGC 78

Query: 418 NSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIHNLSLKRLACHDVPMSN 597
               A+ +F+++ +     +     S++  C     L  G QI     K     ++ + +
Sbjct: 79  YQ-DALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQS 137

Query: 598 ALIDMYSKSGEIVDACRVF 654
           AL+D++SK G++ DA  +F
Sbjct: 138 ALLDLHSKCGKMEDASYLF 156


>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  245 bits (625), Expect = 6e-63
 Identities = 123/217 (56%), Positives = 160/217 (73%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTL 183
           HSKCGKMEDA Y+F  M  +D+VSWN+MIGG+AV+ F++D+  MFR MLR G+ PD +TL
Sbjct: 176 HSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 235

Query: 184 ACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIE 363
             VL ASA G  L    Q+HG + + G+ SY+ + G LINAYAK+GS+RSA  + K +++
Sbjct: 236 GSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLK 295

Query: 364 KDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQ 543
           KD  S TALITGYA EG  S+ A++LF E++Q+ + +D+VILCSM+NICAN AS +LG Q
Sbjct: 296 KDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ 355

Query: 544 IHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
           IH  +LK    +DV M NALIDMY+KSGEI DA R F
Sbjct: 356 IHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAF 392



 Score =  114 bits (285), Expect = 2e-23
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 1/218 (0%)
 Frame = +1

Query: 1    LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
            ++ K G M +A  +   M   D V+WN++IGG A     N+A++ ++L+  +G+  +  T
Sbjct: 1193 MYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYIT 1252

Query: 181  LACVLMASARGKDLSNVGQ-LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNL 357
            +  VL A +   DL   G  +H  ++ +GF S + +  SLI  YAK G + S++ I+  L
Sbjct: 1253 MVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGL 1312

Query: 358  IEKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG 537
              K  I+  A++   A  G     A+ +F E+  V +N+D       +   AN A L  G
Sbjct: 1313 GNKSPITWNAMVAANAHHGCGE-EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEG 1371

Query: 538  RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRV 651
            +Q+H L +K     D+ ++NA +DMY K GE+ D  ++
Sbjct: 1372 QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKM 1409



 Score = 98.6 bits (244), Expect = 9e-19
 Identities = 57/219 (26%), Positives = 120/219 (54%), Gaps = 1/219 (0%)
 Frame = +1

Query: 1    LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
            ++SK G +E A Y+F+ M +++  SW++M+ G+       +A+ +F  M   G+ P+ F 
Sbjct: 788  MYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFM 847

Query: 181  LACVLMASARGKDLSNVG-QLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNL 357
            +A ++ A +R   +++ G Q+HGFV+K+G +    +  +L++ Y   G V +A ++++ +
Sbjct: 848  VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 907

Query: 358  IEKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG 537
             + + +S T+L+ GY+  G N    +N++  + Q  ++ +     ++ + C       LG
Sbjct: 908  PDHNVVSWTSLMVGYSDSG-NPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLG 966

Query: 538  RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
             Q+    ++      V ++N+LI M+S    + +AC VF
Sbjct: 967  YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVF 1005



 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 57/218 (26%), Positives = 114/218 (52%), Gaps = 1/218 (0%)
 Frame = +1

Query: 1    LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
            + S    +E+A Y+F+ M+  D++SWN+MI  +A      +++R F  M       ++ T
Sbjct: 991  MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050

Query: 181  LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
            L+ +L   +   +L     +HG V+K G  S   +  +L+  Y+++G    A+ +++ + 
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 1110

Query: 361  EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
            E+D IS  +++  Y ++G   +  + +  EL Q+   +++V   S +  C+N   L   +
Sbjct: 1111 ERDLISWNSMMACYVQDG-KCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESK 1169

Query: 541  QIHNLSLKRLACHD-VPMSNALIDMYSKSGEIVDACRV 651
             +H L +     HD + + NAL+ MY K G +++A +V
Sbjct: 1170 IVHALIIV-AGFHDFLIVGNALVTMYGKLGMMMEAKKV 1206



 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 2/219 (0%)
 Frame = +1

Query: 4    HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTL 183
            +   G + +A  +F  M + ++VSW S++ G++      + + +++ M +EG++ +  T 
Sbjct: 891  YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF 950

Query: 184  ACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIE 363
            A V  +    +D     Q+ G +++ GF    S+  SLI+ ++   SV  A  ++ ++ E
Sbjct: 951  ATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNE 1010

Query: 364  KDTISCTALITGYAREG--SNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG 537
             D IS  A+I+ YA  G    S+   +    LH      ++  L S++++C++  +L  G
Sbjct: 1011 CDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN---ETNSTTLSSLLSVCSSVDNLKWG 1067

Query: 538  RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
            R IH L +K     +V + N L+ +YS++G   DA  VF
Sbjct: 1068 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVF 1106



 Score = 85.5 bits (210), Expect = 8e-15
 Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 1/219 (0%)
 Frame = +1

Query: 1    LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
            L+S+ G+ EDA  +F  M+ +DL+SWNSM+  +       D +++   +L+ G   ++ T
Sbjct: 1092 LYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVT 1151

Query: 181  LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
             A  L A +  + L     +H  ++ +GF  +  +  +L+  Y K G +  A ++ + + 
Sbjct: 1152 FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 1211

Query: 361  EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINIC-ANTASLSLG 537
            + D ++  ALI G+A E      AV  +  + +  +  + + + S++  C A    L  G
Sbjct: 1212 QPDRVTWNALIGGHA-ENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 1270

Query: 538  RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
              IH   +      D  + N+LI MY+K G++  +  +F
Sbjct: 1271 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 1309



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 1/215 (0%)
 Frame = +1

Query: 1    LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
            +++KCG +  + YIF+ + NK  ++WN+M+   A      +A+++F  M   G+  D F+
Sbjct: 1295 MYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFS 1354

Query: 181  LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
             +  L A+A    L    QLHG V+K GF S   +  + ++ Y K G +    ++    I
Sbjct: 1355 FSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPI 1414

Query: 361  EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
             +  +S   LI+ +AR G     A   F E+ ++    D+V   S+++ C +   +  G 
Sbjct: 1415 NRSRLSWNILISAFARHGCFQ-KARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 1473

Query: 541  QIHNLSLKRLACH-DVPMSNALIDMYSKSGEIVDA 642
              ++   +       +     +ID+  +SG +  A
Sbjct: 1474 AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHA 1508



 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRW-FSNDAIRMFRLMLREGMTPDNFT 180
           ++K G +  A  +   M  KDL S  ++I G+A    +S DA+ +F+ M +  +  D+  
Sbjct: 277 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 336

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
           L  +L   A     +   Q+H F LK       ++  +LI+ YAKSG +  A R +  + 
Sbjct: 337 LCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME 396

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG- 537
           EK+ IS T+LI+GYA+ G   + AV+L+ ++       ++V   S++  C++T   + G 
Sbjct: 397 EKNVISWTSLISGYAKHGYGHM-AVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGC 455

Query: 538 ----RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDA 642
                 ++  ++K  A H     + ++D++++ G + +A
Sbjct: 456 ECFNNMVNKYNIKPRAEH----YSCMVDLFARQGLLEEA 490



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 53/212 (25%), Positives = 102/212 (48%), Gaps = 1/212 (0%)
 Frame = +1

Query: 10  KCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTLAC 189
           K G +  A  +F+ M  + +VSW +M+ G++       A  +F  M   G+  + FT   
Sbjct: 77  KVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGS 136

Query: 190 VLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKD 369
            L A    + L    Q+ G + K  FV    +  +L++ ++K G +  A  ++  ++E+D
Sbjct: 137 ALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD 196

Query: 370 TISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIH 549
            +S  A+I GYA +G  +  +  +F  + +  +  D   L S++   A    L +  QIH
Sbjct: 197 VVSWNAMIGGYAVQGF-ADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIH 255

Query: 550 NLSLK-RLACHDVPMSNALIDMYSKSGEIVDA 642
            +  +     +D+ ++  LI+ Y+K+G +  A
Sbjct: 256 GIITQLGYGSYDI-VTGLLINAYAKNGSLRSA 286



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 38/139 (27%), Positives = 70/139 (50%)
 Frame = +1

Query: 238 LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKDTISCTALITGYAREGS 417
           +H  ++ +GF S   LN  LI  Y K G V +A  ++  + E+  +S TA+++GY++ G 
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 418 NSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIHNLSLKRLACHDVPMSN 597
                V LF ++    +  +     S +  C +   L +G Q+     K     ++ + +
Sbjct: 112 FEKAFV-LFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 170

Query: 598 ALIDMYSKSGEIVDACRVF 654
           AL+D +SK G++ DA  +F
Sbjct: 171 ALVDFHSKCGKMEDASYLF 189


>emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  245 bits (625), Expect = 6e-63
 Identities = 123/217 (56%), Positives = 160/217 (73%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTL 183
           HSKCGKMEDA Y+F  M  +D+VSWN+MIGG+AV+ F++D+  MFR MLR G+ PD +TL
Sbjct: 297 HSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 356

Query: 184 ACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIE 363
             VL ASA G  L    Q+HG + + G+ SY+ + G LINAYAK+GS+RSA  + K +++
Sbjct: 357 GSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLK 416

Query: 364 KDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQ 543
           KD  S TALITGYA EG  S+ A++LF E++Q+ + +D+VILCSM+NICAN AS +LG Q
Sbjct: 417 KDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ 476

Query: 544 IHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
           IH  +LK    +DV M NALIDMY+KSGEI DA R F
Sbjct: 477 IHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAF 513



 Score = 79.3 bits (194), Expect = 6e-13
 Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
 Frame = +1

Query: 4    HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRW-FSNDAIRMFRLMLREGMTPDNFT 180
            ++K G +  A  +   M  KDL S  ++I G+A    +S DA+ +F+ M +  +  D+  
Sbjct: 398  YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 457

Query: 181  LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
            L  +L   A     +   Q+H F LK       ++  +LI+ YAKSG +  A R +  + 
Sbjct: 458  LCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME 517

Query: 361  EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG- 537
            EK+ IS T+LI+GYA+ G   + AV+L+ ++       ++V   S++  C++T   + G 
Sbjct: 518  EKNVISWTSLISGYAKHGYGHM-AVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGC 576

Query: 538  ----RQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDA 642
                  ++  ++K  A H     + ++D++++ G + +A
Sbjct: 577  ECFNNMVNKYNIKPRAEH----YSCMVDLFARQGLLEEA 611



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 53/212 (25%), Positives = 102/212 (48%), Gaps = 1/212 (0%)
 Frame = +1

Query: 10  KCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTLAC 189
           K G +  A  +F+ M  + +VSW +M+ G++       A  +F  M   G+  + FT   
Sbjct: 198 KVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGS 257

Query: 190 VLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKD 369
            L A    + L    Q+ G + K  FV    +  +L++ ++K G +  A  ++  ++E+D
Sbjct: 258 ALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD 317

Query: 370 TISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIH 549
            +S  A+I GYA +G  +  +  +F  + +  +  D   L S++   A    L +  QIH
Sbjct: 318 VVSWNAMIGGYAVQGF-ADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIH 376

Query: 550 NLSLK-RLACHDVPMSNALIDMYSKSGEIVDA 642
            +  +     +D+ ++  LI+ Y+K+G +  A
Sbjct: 377 GIITQLGYGSYDI-VTGLLINAYAKNGSLRSA 407



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 38/139 (27%), Positives = 70/139 (50%)
 Frame = +1

Query: 238 LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKDTISCTALITGYAREGS 417
           +H  ++ +GF S   LN  LI  Y K G V +A  ++  + E+  +S TA+++GY++ G 
Sbjct: 173 IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 232

Query: 418 NSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIHNLSLKRLACHDVPMSN 597
                V LF ++    +  +     S +  C +   L +G Q+     K     ++ + +
Sbjct: 233 FEKAFV-LFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 291

Query: 598 ALIDMYSKSGEIVDACRVF 654
           AL+D +SK G++ DA  +F
Sbjct: 292 ALVDFHSKCGKMEDASYLF 310


>ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547280|gb|EEF48775.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 597

 Score =  243 bits (621), Expect = 2e-62
 Identities = 118/218 (54%), Positives = 164/218 (75%)
 Frame = +1

Query: 1   LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
           LHSKCG MEDA Y+F  MS +D+VSWN++IGG+A + F++D+ RMF  M+ EG+TPD FT
Sbjct: 182 LHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFT 241

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
           L  VL AS+R  +L  V Q+HG +++ GF S+  LNGSLI+AYAKS  ++SA  +YK+++
Sbjct: 242 LGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSML 301

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
           +KD IS TA++TGYAR+ S S  A++LF ++  + M ID+V  C+M+N+CA+ ASLS+GR
Sbjct: 302 KKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGR 361

Query: 541 QIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
           QIH L++K    +DV   NAL+DMY+KSGEI DA R F
Sbjct: 362 QIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAF 399



 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 56/215 (26%), Positives = 109/215 (50%)
 Frame = +1

Query: 10  KCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFTLAC 189
           K G+  +A  +F+ M  +++VSW + I G+A      DA+ +F  M R G+  + FT   
Sbjct: 84  KFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGS 143

Query: 190 VLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKD 369
           VL A    + L    Q+HG + K+ F+    +  +L++ ++K G++  A  +++ + E+D
Sbjct: 144 VLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERD 203

Query: 370 TISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIH 549
            +S  A+I GYA +  N   +  +F  +    +  D   L S++   +   +L    QIH
Sbjct: 204 VVSWNAVIGGYAAQDFND-DSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIH 262

Query: 550 NLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
            + ++      + ++ +LID Y+KS  +  A  ++
Sbjct: 263 GIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALY 297



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 3/216 (1%)
 Frame = +1

Query: 4   HSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRW-FSNDAIRMFRLMLREGMTPDNFT 180
           ++K   M+ A  ++  M  KD++S+ +++ G+A +  +S +A+ +F+ M    M  D+ T
Sbjct: 284 YAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVT 343

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGS-LINAYAKSGSVRSADRIYKNL 357
              +L   A    LS   Q+H   +K    SY+   G+ L++ YAKSG +  A R +  +
Sbjct: 344 FCTMLNVCADIASLSIGRQIHALAIKYK-PSYDVATGNALVDMYAKSGEIEDATRAFYEM 402

Query: 358 IEKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLG 537
            EK+ IS T+LITGY + G     A+ L+ ++    +  +++   S++  C+++     G
Sbjct: 403 KEKNVISWTSLITGYGKHGYGH-EAIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEG 461

Query: 538 RQ-IHNLSLKRLACHDVPMSNALIDMYSKSGEIVDA 642
            +  +N+  K          + +ID++++ G++ +A
Sbjct: 462 WECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEA 497



 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 42/155 (27%), Positives = 78/155 (50%)
 Frame = +1

Query: 190 VLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKD 369
           +L      +DL     +H  ++++GF S   L+  LI  Y K G   +A +++  + E++
Sbjct: 43  ILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERN 102

Query: 370 TISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIH 549
            +S TA I+GYA+ G     A+ +F ++ +  +  +     S++  C     L  G QIH
Sbjct: 103 VVSWTAQISGYAKNGHYQ-DALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIH 161

Query: 550 NLSLKRLACHDVPMSNALIDMYSKSGEIVDACRVF 654
               K     ++ + +AL+D++SK G + DA  +F
Sbjct: 162 GCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLF 196



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
 Frame = +1

Query: 1   LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
           +++K G++EDA   F  M  K+++SW S+I G+    + ++AI +++ M  EG+ P++ T
Sbjct: 385 MYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDIT 444

Query: 181 LACVLMASARGKDLSNVGQ--LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSA-DRIYK 351
              +L A +    L+  G    +  + K   +        +I+ +A+ G +  A + I K
Sbjct: 445 FLSLLFACSH-SGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICK 503

Query: 352 NLIEKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLS 531
             I+ ++    A++   +  G  S+G V     L     N  N ++  +  I A + S  
Sbjct: 504 MNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVV--LAGIYAASGSWD 561

Query: 532 LGRQIHNL----SLKRLACHDVPMS 594
              ++ NL    SLK++  + +  S
Sbjct: 562 KACRMRNLMEYRSLKKIPGYSIIQS 586


>ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329106|gb|EFH59525.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 564

 Score =  181 bits (460), Expect = 8e-44
 Identities = 95/219 (43%), Positives = 141/219 (64%), Gaps = 1/219 (0%)
 Frame = +1

Query: 1   LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
           L+++CGKMEDA   F+ M  +DLVSWNSMI G+      + +  +F+LM  EG  PD FT
Sbjct: 157 LYARCGKMEDARLQFDSMKERDLVSWNSMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFT 216

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
              +L AS   K L  VGQLHG  +K GF   ++L  SL++AY K GS+ +A +++++  
Sbjct: 217 FGSLLRASIVVKCLEPVGQLHGLAIKLGFGRSSALIRSLVDAYVKCGSIANAWKLHEDTT 276

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGR 540
           ++D ISCTALITG+A++   +  A ++F E+  +   +D V++ SM+ IC   AS+++GR
Sbjct: 277 KRDLISCTALITGFAQQNICTSDAFDIFNEMILMKTKMDEVVVSSMLKICTTIASVTVGR 336

Query: 541 QIHNLSLKRLACH-DVPMSNALIDMYSKSGEIVDACRVF 654
           QIH  +LK      D+ + N+LIDMY+KSG+I DA   F
Sbjct: 337 QIHGFALKSSQIRFDIALGNSLIDMYAKSGDIEDAVLAF 375



 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 6/217 (2%)
 Frame = +1

Query: 10  KCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWF-SNDAIRMFRLMLREGMTPDNFTLA 186
           KCG + +A+ +    + +DL+S  ++I GFA +   ++DA  +F  M+      D   ++
Sbjct: 261 KCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDIFNEMILMKTKMDEVVVS 320

Query: 187 CVLMASARGKDLSNVGQLHGFVLKSGFVSYN-SLNGSLINAYAKSGSVRSADRIYKNLIE 363
            +L        ++   Q+HGF LKS  + ++ +L  SLI+ YAKSG +  A   ++ + E
Sbjct: 321 SMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIEDAVLAFEEMKE 380

Query: 364 KDTISCTALITGYAREGSNSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQ 543
           KD  S T+LI GY R G N   A++L+  +    +  ++V   S+++ C++T    LG +
Sbjct: 381 KDVRSWTSLIAGYGRHG-NFEKAIDLYNRMEHEGIKPNDVTFLSLLSACSHTGQTELGWK 439

Query: 544 IHNLSLKRLACHDVPMS----NALIDMYSKSGEIVDA 642
           I N   K +  H +       + +IDM ++SG + +A
Sbjct: 440 IFN---KMINKHGIKAREEHFSCIIDMLARSGYLEEA 473



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 4/221 (1%)
 Frame = +1

Query: 1   LHSKCGKMEDAYYIFNVMSNKDLVSWNSMIGGFAVRWFSNDAIRMFRLMLREGMTPDNFT 180
           L+ K G ++ A  +F+ +  +D+VSW +MI  F+   +  DA+ +F+ M R+ +  + FT
Sbjct: 56  LYLKQGDVKHARKLFDRIPKRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFT 115

Query: 181 LACVLMASARGKDLSNVGQLHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLI 360
              VL +      L    Q+ G + K        +  +L++ YA+ G +  A   + ++ 
Sbjct: 116 YGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMK 175

Query: 361 EKDTISCTALITGYAREGSNSIGAVNLFIELHQVLM----NIDNVILCSMINICANTASL 528
           E+D +S  ++I GY          V+    L Q++       D     S++        L
Sbjct: 176 ERDLVSWNSMIDGYTTN-----ACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCL 230

Query: 529 SLGRQIHNLSLKRLACHDVPMSNALIDMYSKSGEIVDACRV 651
               Q+H L++K        +  +L+D Y K G I +A ++
Sbjct: 231 EPVGQLHGLAIKLGFGRSSALIRSLVDAYVKCGSIANAWKL 271



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 38/135 (28%), Positives = 74/135 (54%)
 Frame = +1

Query: 238 LHGFVLKSGFVSYNSLNGSLINAYAKSGSVRSADRIYKNLIEKDTISCTALITGYAREGS 417
           +HG  + +GF S   LN  LI+ Y K G V+ A +++  + ++D +S TA+I+ ++R G 
Sbjct: 34  IHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARKLFDRIPKRDVVSWTAMISRFSRCGY 93

Query: 418 NSIGAVNLFIELHQVLMNIDNVILCSMINICANTASLSLGRQIHNLSLKRLACHDVPMSN 597
           +   A+ LF ++H+  +  +     S++  C +   L  G QI     K     ++ + +
Sbjct: 94  HR-DALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRS 152

Query: 598 ALIDMYSKSGEIVDA 642
           AL+ +Y++ G++ DA
Sbjct: 153 ALLSLYARCGKMEDA 167