BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00028664
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...    97   2e-18
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia...    89   3e-16
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...    88   8e-16
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...    87   1e-15
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...    87   1e-15

>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
            11.19) [Arabidopsis thaliana]
          Length = 1633

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 56/124 (45%), Positives = 73/124 (58%), Gaps = 14/124 (11%)
 Frame = +1

Query: 19   LFQSRIPFKYWSECVLTAAI---GLP----------QML*RMFRHFRNCTTSLAFAATIT 159
            LFQS +P +YWS+CVLTAA     LP          ++L +    +    + L +A+T  
Sbjct: 672  LFQSNVPLQYWSDCVLTAAYLINRLPSPLLDNKTPFELLLKKIPDYTLLKSCLCYASTNV 731

Query: 160  TRRNKFNPRARVCVFIGSPVGMKGYKLLDLDNRQAFISRVVIFHEAIFPFHHLAHDK-PV 336
              RNKF+PRAR CVF+G P G KGYK+LDL++    I+R V+FHE  FPF      K  V
Sbjct: 732  HDRNKFSPRARPCVFLGYPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESV 791

Query: 337  DMFP 348
            DMFP
Sbjct: 792  DMFP 795


>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268497|emb|CAB78748.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1433

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
 Frame = +1

Query: 19   LFQSRIPFKYWSECVLTAAIGLPQML*RM------FRHFRNCTTS---------LAFAAT 153
            LFQS IP ++W +CVLTA   + ++   +      +   +N   +         L +++T
Sbjct: 716  LFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSST 775

Query: 154  ITTRRNKFNPRARVCVFIGSPVGMKGYKLLDLDNRQAFISRVVIFHEAIFPF-HHLAHDK 330
               +R+KF PRAR CVF+G P+G KGYKLLD++     ISR VIFHE IFPF      D 
Sbjct: 776  SPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISSTIKDD 835

Query: 331  PVDMFP 348
              D FP
Sbjct: 836  IKDFFP 841


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
            gi|7268152|emb|CAB78488.1| retrovirus-related like
            polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 53/126 (42%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
 Frame = +1

Query: 19   LFQSRIPFKYWSECVLTAAI---GLPQML*RMFRHFRNCTTS------------LAFAAT 153
            LFQS IP +YWS+CV TA      LP  L      +                  L F +T
Sbjct: 749  LFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYELILNKQPDYSLLKNFGCLCFVST 808

Query: 154  ITTRRNKFNPRARVCVFIGSPVGMKGYKLLDLDNRQAFISRVVIFHEAIFPFH-HLAHDK 330
                R KF PRAR CVF+G P G KGYK+LDL++    +SR V+F E +FPF      +K
Sbjct: 809  NAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNK 868

Query: 331  PVDMFP 348
             VDMFP
Sbjct: 869  AVDMFP 874


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 15/112 (13%)
 Frame = +1

Query: 19   LFQSRIPFKYWSECVLTAAI-------------GLPQML*RMFRHFRNCTT--SLAFAAT 153
            LFQS+IP  YW +C+LTA                L +ML +    + +  +   L +A+T
Sbjct: 706  LFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTHLKSFGCLCYAST 765

Query: 154  ITTRRNKFNPRARVCVFIGSPVGMKGYKLLDLDNRQAFISRVVIFHEAIFPF 309
               +R+KF  RAR C F+G P G KGYKLLDL++   FISR V+F+E +FPF
Sbjct: 766  SPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYEDLFPF 817


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. acephala]
          Length = 1131

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 17/127 (13%)
 Frame = +1

Query: 19   LFQSRIPFKYWSECVLTAAIGLP-------------QML*RMFRHFRNCTT--SLAFAAT 153
            +FQS++P +YW +CVLTAA  +              ++L      +    T   L + +T
Sbjct: 690  MFQSQVPLQYWGDCVLTAAFLINRTPSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGST 749

Query: 154  ITTRRNKFNPRARVCVFIGSPVGMKGYKLLDLDNRQAFISRVVIFHEAIFPF--HHLAHD 327
               +R+KF PR+R CVF+G P G KGYKLLDL++ + +ISR V FHE IFP   H    +
Sbjct: 750  SPKQRHKFMPRSRACVFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDE 809

Query: 328  KPVDMFP 348
              +  FP
Sbjct: 810  SSLHFFP 816