BLASTX nr result

ID: Atractylodes21_contig00026811 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00026811
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28088.3| unnamed protein product [Vitis vinifera]              133   2e-29
ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-...   133   2e-29
emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]   132   6e-29
ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative...   125   8e-27
ref|XP_002331157.1| predicted protein [Populus trichocarpa] gi|2...   119   4e-25

>emb|CBI28088.3| unnamed protein product [Vitis vinifera]
          Length = 1126

 Score =  133 bits (335), Expect = 2e-29
 Identities = 71/128 (55%), Positives = 84/128 (65%)
 Frame = -1

Query: 603  HVTLQHMACTFKPMSDNSSSTNQQLVFLYHLTTGACPESYGMQVALMAGIPKRVVEAASK 424
            HVTLQHMACTF    + SS   Q+LVFLY LT+GACPESYG+QVALMAG+PK VVEAAS 
Sbjct: 989  HVTLQHMACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGVPKEVVEAAST 1048

Query: 423  AREVMKKKIGVXXXXXXXXXXXSTLHEDWLNTVLTVAKVXXXXXXXXXXXXXXDTLFCLW 244
            A  +MK+ IG            STLHE+WL  +LTV+++              DTLFCLW
Sbjct: 1049 AGRMMKQSIGESFRTSEQRSEFSTLHEEWLKALLTVSRL----GEHNFDDDAWDTLFCLW 1104

Query: 243  HELKCSNQ 220
            HE+K S Q
Sbjct: 1105 HEMKSSCQ 1112


>ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera]
          Length = 1122

 Score =  133 bits (335), Expect = 2e-29
 Identities = 71/128 (55%), Positives = 84/128 (65%)
 Frame = -1

Query: 603  HVTLQHMACTFKPMSDNSSSTNQQLVFLYHLTTGACPESYGMQVALMAGIPKRVVEAASK 424
            HVTLQHMACTF    + SS   Q+LVFLY LT+GACPESYG+QVALMAG+PK VVEAAS 
Sbjct: 985  HVTLQHMACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGVPKEVVEAAST 1044

Query: 423  AREVMKKKIGVXXXXXXXXXXXSTLHEDWLNTVLTVAKVXXXXXXXXXXXXXXDTLFCLW 244
            A  +MK+ IG            STLHE+WL  +LTV+++              DTLFCLW
Sbjct: 1045 AGRMMKQSIGESFRTSEQRSEFSTLHEEWLKALLTVSRL----GEHNFDDDAWDTLFCLW 1100

Query: 243  HELKCSNQ 220
            HE+K S Q
Sbjct: 1101 HEMKSSCQ 1108


>emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]
          Length = 1090

 Score =  132 bits (331), Expect = 6e-29
 Identities = 71/128 (55%), Positives = 83/128 (64%)
 Frame = -1

Query: 603  HVTLQHMACTFKPMSDNSSSTNQQLVFLYHLTTGACPESYGMQVALMAGIPKRVVEAASK 424
            HVTLQHMACTF    + SS   Q+LVFLY LT+GACPESYG+QVALMAG PK VVEAAS 
Sbjct: 953  HVTLQHMACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGXPKEVVEAAST 1012

Query: 423  AREVMKKKIGVXXXXXXXXXXXSTLHEDWLNTVLTVAKVXXXXXXXXXXXXXXDTLFCLW 244
            A  +MK+ IG            STLHE+WL  +LTV+++              DTLFCLW
Sbjct: 1013 AGRMMKQSIGESFRTSEQRSEFSTLHEEWLKALLTVSRL----GEHNFDDDAWDTLFCLW 1068

Query: 243  HELKCSNQ 220
            HE+K S Q
Sbjct: 1069 HEMKSSCQ 1076


>ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis]
            gi|223546788|gb|EEF48286.1| DNA mismatch repair protein
            MSH6-2, putative [Ricinus communis]
          Length = 1089

 Score =  125 bits (313), Expect = 8e-27
 Identities = 69/127 (54%), Positives = 83/127 (65%)
 Frame = -1

Query: 600  VTLQHMACTFKPMSDNSSSTNQQLVFLYHLTTGACPESYGMQVALMAGIPKRVVEAASKA 421
            V LQHMAC FK  S++ S ++Q LVFLY L +GACPESYG+QVA+MAGIP+ VVEAAS+A
Sbjct: 964  VILQHMACAFKSKSESYSESDQDLVFLYRLASGACPESYGLQVAVMAGIPENVVEAASQA 1023

Query: 420  REVMKKKIGVXXXXXXXXXXXSTLHEDWLNTVLTVAKVXXXXXXXXXXXXXXDTLFCLWH 241
             +VMKK IG            STLHED L T+L+  ++              DTLFCLWH
Sbjct: 1024 GQVMKKSIGESFRSSEKRSEFSTLHEDGLKTLLSATQI--GGCNFDNTDDVYDTLFCLWH 1081

Query: 240  ELKCSNQ 220
            ELK S Q
Sbjct: 1082 ELKNSYQ 1088


>ref|XP_002331157.1| predicted protein [Populus trichocarpa] gi|222873240|gb|EEF10371.1|
            predicted protein [Populus trichocarpa]
          Length = 1107

 Score =  119 bits (298), Expect = 4e-25
 Identities = 64/135 (47%), Positives = 83/135 (61%)
 Frame = -1

Query: 603  HVTLQHMACTFKPMSDNSSSTNQQLVFLYHLTTGACPESYGMQVALMAGIPKRVVEAASK 424
            HV+LQ+MAC FK   ++ S +++ LVFLY L +GACP SYG+QVA MAGIP+ VVEAAS 
Sbjct: 976  HVSLQYMACAFKSKPESYSKSDRDLVFLYRLASGACPGSYGLQVATMAGIPEHVVEAASH 1035

Query: 423  AREVMKKKIGVXXXXXXXXXXXSTLHEDWLNTVLTVAKVXXXXXXXXXXXXXXDTLFCLW 244
            A ++MK   G            STLHE+WL T++ V+++              DTLFCLW
Sbjct: 1036 AGQLMKNSTGESFKSSERRSEFSTLHEEWLKTLVNVSRI---RDCNFDDDDVYDTLFCLW 1092

Query: 243  HELKCSNQKL*DKMR 199
            HELK S +    K R
Sbjct: 1093 HELKSSYESCSSKSR 1107


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