BLASTX nr result

ID: Atractylodes21_contig00026379 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00026379
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vit...    65   4e-09
ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Rici...    65   4e-09
gb|AEL98820.1| AP-1 complex subunit gamma-1, partial [Silene lat...    57   1e-06
gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene lat...    57   2e-06

>ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|222855073|gb|EEE92620.1|
           predicted protein [Populus trichocarpa]
          Length = 877

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
 Frame = +2

Query: 2   LLDVDXXXXXXXXXXXXARKSGTDVLLDLLSIGSPPPQNGSS--------KDNKTSVSPL 157
           LL VD             +K+GTDVLLDLLSIG PP Q+ SS        ++ K+ ++ L
Sbjct: 657 LLGVDLSPAPTQSGTNQVQKAGTDVLLDLLSIGVPPVQSSSSTTDILSPIQNEKSPIATL 716

Query: 158 DSLSSAIGPPVQASSTAGDSPMMDLL 235
           D+LSS+  P  QA+S+A  +PMMDLL
Sbjct: 717 DALSSSSSPSAQATSSARAAPMMDLL 742


>ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vitis vinifera]
           gi|296086533|emb|CBI32122.3| unnamed protein product
           [Vitis vinifera]
          Length = 878

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
 Frame = +2

Query: 2   LLDVDXXXXXXXXXXXXARKSGTDVLLDLLSIGSPPPQNGS---------SKDNKTSVSP 154
           LL VD              K+GTDVLLDLLSIG+PPP   S         S+DNK     
Sbjct: 657 LLGVDLSVGSSLSGMTQVPKAGTDVLLDLLSIGTPPPAQSSLSTPDILSSSQDNKMPAPT 716

Query: 155 LDSLSSAIGPPVQASSTAGDSPMMDLL 235
           L+ LSS     +QASS AG +PMMDLL
Sbjct: 717 LERLSSPSSISIQASSPAGAAPMMDLL 743


>ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Ricinus communis]
           gi|223539863|gb|EEF41443.1| AP-1 complex subunit
           gamma-2, putative [Ricinus communis]
          Length = 875

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
 Frame = +2

Query: 2   LLDVDXXXXXXXXXXXXARKSGTDVLLDLLSIGSPPPQNGSS--------KDNKTSVSPL 157
           LL VD            A K+GT++LLDLLSIG+PP Q+ SS        +DN+T ++ L
Sbjct: 656 LLGVDLAPGSTQPGSNQAPKAGTNILLDLLSIGTPPVQSSSSTSDLLLSGQDNQTPITTL 715

Query: 158 DSLSSAIGPPVQASSTAGDSPMMDLL 235
           D+LSS   P  Q  S+ G SPMMDLL
Sbjct: 716 DALSSPF-PSAQVKSSVGASPMMDLL 740


>gb|AEL98820.1| AP-1 complex subunit gamma-1, partial [Silene latifolia]
          Length = 878

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
 Frame = +2

Query: 56  RKSGTDVLLDLLSIGSPPPQNGS--------SKDNKTSVSPLDSLSSAIGPPVQASSTAG 211
           +KSGTD LLDLLSIGS P  N S        S + K S + L+ LSS    P Q SS +G
Sbjct: 676 QKSGTDALLDLLSIGSSPAANTSAIPDILSLSLETKPSGATLEGLSSVSSIPKQVSSLSG 735

Query: 212 DSPMMDLL 235
            +PMMDLL
Sbjct: 736 TAPMMDLL 743


>gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene latifolia]
          Length = 878

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
 Frame = +2

Query: 56  RKSGTDVLLDLLSIGSPPPQNGS--------SKDNKTSVSPLDSLSSAIGPPVQASSTAG 211
           +KSGTD LLDLLSIGS P  N S        S + K S + L+ LSS    P Q SS +G
Sbjct: 676 QKSGTDALLDLLSIGSSPAANTSAIPDILSLSLETKHSGATLEGLSSVSSIPKQVSSLSG 735

Query: 212 DSPMMDLL 235
            +PMMDLL
Sbjct: 736 PAPMMDLL 743


Top