BLASTX nr result

ID: Atractylodes21_contig00025322 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00025322
         (539 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD45096.2| ribosomal protein S2 [Amborella trichopoda]            70   2e-10
gb|AEX99504.1| ribosomal protein S2 (chloroplast) [Chrysanthemum...    69   5e-10
ref|YP_007353756.1| ribosomal protein S2 (chloroplast) [Chrysant...    69   5e-10
ref|YP_398848.1| ribosomal protein S2 [Nicotiana tomentosiformis...    69   5e-10
ref|YP_398319.1| ribosomal protein S2 [Lactuca sativa] gi|752834...    69   5e-10

>emb|CAD45096.2| ribosomal protein S2 [Amborella trichopoda]
          Length = 275

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 26  KGEAVWGEMTRRYWNINIEEMMEAGVHIGHGTRKWNPK 139
           K E VW EM RRYW+IN+EEMM AGVH GHGTRKWNP+
Sbjct: 32  KKEEVWVEMARRYWDINLEEMMGAGVHFGHGTRKWNPR 69


>gb|AEX99504.1| ribosomal protein S2 (chloroplast) [Chrysanthemum indicum]
          Length = 236

 Score = 68.9 bits (167), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 50  MTRRYWNINIEEMMEAGVHIGHGTRKWNPK 139
           MTRRYWNIN+EEMMEAGVH GHGTRKWNPK
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPK 30


>ref|YP_007353756.1| ribosomal protein S2 (chloroplast) [Chrysanthemum x morifolium]
           gi|452849041|ref|YP_007474719.1| ribosomal protein S2
           (chloroplast) [Chrysanthemum indicum]
           gi|372863196|gb|AEX99268.1| ribosomal protein S2
           (chloroplast) [Chrysanthemum indicum]
           gi|375298825|gb|AFA45264.1| ribosomal protein S2
           (chloroplast) [Chrysanthemum x morifolium]
          Length = 236

 Score = 68.9 bits (167), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 50  MTRRYWNINIEEMMEAGVHIGHGTRKWNPK 139
           MTRRYWNIN+EEMMEAGVH GHGTRKWNPK
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPK 30


>ref|YP_398848.1| ribosomal protein S2 [Nicotiana tomentosiformis]
           gi|122245644|sp|Q33C49.1|RR2_NICTO RecName: Full=30S
           ribosomal protein S2, chloroplastic
           gi|80750910|dbj|BAE47986.1| ribosomal protein S2
           [Nicotiana tomentosiformis]
          Length = 236

 Score = 68.9 bits (167), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 50  MTRRYWNINIEEMMEAGVHIGHGTRKWNPK 139
           MTRRYWNIN+EEMMEAGVH GHGTRKWNPK
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPK 30


>ref|YP_398319.1| ribosomal protein S2 [Lactuca sativa]
           gi|75283447|sp|Q56P10.1|RR2_LACSA RecName: Full=30S
           ribosomal protein S2, chloroplastic
           gi|61992024|gb|AAX58145.1| ribosomal protein S2 [Lactuca
           sativa] gi|78675158|dbj|BAE47584.1| chloroplast 30S
           ribosomal protein S2 [Lactuca sativa]
           gi|88656973|gb|ABD47223.1| ribosomal protein S2 [Lactuca
           sativa]
          Length = 236

 Score = 68.9 bits (167), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 50  MTRRYWNINIEEMMEAGVHIGHGTRKWNPK 139
           MTRRYWNIN+EEMMEAGVH GHGTRKWNPK
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPK 30


Top