BLASTX nr result

ID: Atractylodes21_contig00022163 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00022163
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III s...   115   3e-24
ref|XP_002297621.1| predicted protein [Populus trichocarpa] gi|2...   115   3e-24
dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]                          114   8e-24
emb|CBI33284.3| unnamed protein product [Vitis vinifera]              113   2e-23
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s...   113   2e-23

>ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Cucumis sativus] gi|449506569|ref|XP_004162785.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           RPC6-like [Cucumis sativus]
          Length = 243

 Score =  115 bits (289), Expect = 3e-24
 Identities = 50/81 (61%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
 Frame = +3

Query: 3   SMVLDNMIIDVTSTGLGEYHSIPVGKVCYR-CPPGDLSQG-PKTGAMVSNPCGICPRIRH 176
           ++VLDN +++V S+G GE+  IP+GK+CY+ C  G   +G PKTGAM S PCG+CPRI +
Sbjct: 163 ALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITY 222

Query: 177 CTPDGLISPSTCVYYTKWLDF 239
           CTP+G+ISP+TCVYYTKWLDF
Sbjct: 223 CTPNGIISPATCVYYTKWLDF 243


>ref|XP_002297621.1| predicted protein [Populus trichocarpa] gi|222844879|gb|EEE82426.1|
           predicted protein [Populus trichocarpa]
          Length = 239

 Score =  115 bits (289), Expect = 3e-24
 Identities = 51/80 (63%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
 Frame = +3

Query: 3   SMVLDNMIIDVTSTGLGEYHSIPVGKVCYR-CPPGDLSQGPKTGAMVSNPCGICPRIRHC 179
           +++LDN I++V S G+GE+ SIP GKVCYR    G L   PK GA+ S PCG+CPRI HC
Sbjct: 160 TLILDNAIMEVKSNGMGEFASIPFGKVCYRYISKGALGGEPKAGALASIPCGVCPRISHC 219

Query: 180 TPDGLISPSTCVYYTKWLDF 239
           TPDG+ISP TCVYY KWLDF
Sbjct: 220 TPDGIISPKTCVYYQKWLDF 239


>dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
          Length = 235

 Score =  114 bits (285), Expect = 8e-24
 Identities = 49/79 (62%), Positives = 61/79 (77%)
 Frame = +3

Query: 3   SMVLDNMIIDVTSTGLGEYHSIPVGKVCYRCPPGDLSQGPKTGAMVSNPCGICPRIRHCT 182
           ++VLDN + +V S G+GE+ SIPVGKVCY+      S  PK GAM S PCG+CPRI+HCT
Sbjct: 157 ALVLDNKVTEVKSNGMGEFASIPVGKVCYKSIGKGSSGDPKIGAMASIPCGVCPRIKHCT 216

Query: 183 PDGLISPSTCVYYTKWLDF 239
           P+G+ISP TCVYY KWL+F
Sbjct: 217 PNGIISPQTCVYYGKWLEF 235


>emb|CBI33284.3| unnamed protein product [Vitis vinifera]
          Length = 300

 Score =  113 bits (282), Expect = 2e-23
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
 Frame = +3

Query: 3   SMVLDNMIIDVTSTGLGEYHSIPVGKVCYRCP-PGDLSQG-PKTGAMVSNPCGICPRIRH 176
           ++VLDN I++V S+G GE+ SIP+G VCYRC   G L  G P  GAM S PCG+CPRI  
Sbjct: 220 ALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCPRITQ 279

Query: 177 CTPDGLISPSTCVYYTKWLDF 239
           CTPDG+ISP TC YYTKWLDF
Sbjct: 280 CTPDGIISPKTCAYYTKWLDF 300


>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
 Frame = +3

Query: 3   SMVLDNMIIDVTSTGLGEYHSIPVGKVCYRCP-PGDLSQG-PKTGAMVSNPCGICPRIRH 176
           ++VLDN I++V S+G GE+ SIP+G VCYRC   G L  G P  GAM S PCG+CPRI  
Sbjct: 159 ALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCPRITQ 218

Query: 177 CTPDGLISPSTCVYYTKWLDF 239
           CTPDG+ISP TC YYTKWLDF
Sbjct: 219 CTPDGIISPKTCAYYTKWLDF 239


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