BLASTX nr result
ID: Atractylodes21_contig00021702
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00021702
(408 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 234 5e-60
ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] g... 231 6e-59
ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein hel... 229 1e-58
ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2... 229 2e-58
ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Ar... 229 2e-58
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 234 bits (597), Expect = 5e-60
Identities = 115/136 (84%), Positives = 123/136 (90%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
VLGTVQN + A NWLG TYL+IRM RNPT YGL+PD L RD L + RADL+HS+ATILD
Sbjct: 570 VLGTVQNAREACNWLGYTYLYIRMLRNPTLYGLAPDVLTRDITLEERRADLIHSSATILD 629
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
K+NLVKYDRKSGYFQVTDLGRIASYYYITHGTI+TYNEHLKPTM DIELCRLFSLSEEFK
Sbjct: 630 KNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFK 689
Query: 361 YVTVRQDEKMELAKLL 408
YVTVRQDEKMELAKLL
Sbjct: 690 YVTVRQDEKMELAKLL 705
Score = 57.4 bits (137), Expect = 1e-06
Identities = 37/136 (27%), Positives = 71/136 (52%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
V G ++N + A+++L T+++ R+ +NP +Y L + R L D ++LV + + L+
Sbjct: 1408 VAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRH---LSDHLSELVENTLSDLE 1464
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
S V + + +LG IASYYYI++ TI ++ L L + + + E+
Sbjct: 1465 ASKCVAIEEDMDLSPL-NLGMIASYYYISYTTIERFSSSLTSKTRMKGLLEILASASEYA 1523
Query: 361 YVTVRQDEKMELAKLL 408
+ +R E+ L +L+
Sbjct: 1524 QLPIRPGEEEVLRRLI 1539
>ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata]
gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata
subsp. lyrata]
Length = 2171
Score = 231 bits (588), Expect = 6e-59
Identities = 114/136 (83%), Positives = 124/136 (91%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
VLGTVQN + A +WLG TYL+IRM RNPT YGL+PDAL +D +L + RADL+HSAATILD
Sbjct: 930 VLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILD 989
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
K+NLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTM DI+L RLFSLSEEFK
Sbjct: 990 KNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSEEFK 1049
Query: 361 YVTVRQDEKMELAKLL 408
YVTVRQDEKMELAKLL
Sbjct: 1050 YVTVRQDEKMELAKLL 1065
Score = 57.0 bits (136), Expect = 2e-06
Identities = 35/136 (25%), Positives = 73/136 (53%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
V G ++N + A+++L T+++ R+ +NP +Y L + R L D ++LV + + L+
Sbjct: 1768 VAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRH---LSDHLSELVENTLSNLE 1824
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
S ++ + + + +LG IASYYYI++ TI ++ L L + + + E+
Sbjct: 1825 ASKCIEIEDEMELSPL-NLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYD 1883
Query: 361 YVTVRQDEKMELAKLL 408
+ +R E+ + +L+
Sbjct: 1884 MIPIRPGEEDTVRRLI 1899
>ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
thaliana] gi|334182730|ref|NP_001185050.1| putative U5
small nuclear ribonucleoprotein helicase [Arabidopsis
thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative
RNA helicase [Arabidopsis thaliana]
gi|332191925|gb|AEE30046.1| putative U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
gi|332191926|gb|AEE30047.1| putative U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2171
Score = 229 bits (585), Expect = 1e-58
Identities = 113/136 (83%), Positives = 124/136 (91%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
VLGTVQN + A +WLG TYL+IRM RNPT YGL+PDAL +D +L + RADL+HSAATILD
Sbjct: 930 VLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILD 989
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
K+NLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTM DI+L RLFSLS+EFK
Sbjct: 990 KNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFK 1049
Query: 361 YVTVRQDEKMELAKLL 408
YVTVRQDEKMELAKLL
Sbjct: 1050 YVTVRQDEKMELAKLL 1065
Score = 57.0 bits (136), Expect = 2e-06
Identities = 35/136 (25%), Positives = 73/136 (53%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
V G ++N + A+++L T+++ R+ +NP +Y L + R L D ++LV + + L+
Sbjct: 1768 VAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRH---LSDHLSELVENTLSDLE 1824
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
S ++ + + + +LG IASYYYI++ TI ++ L L + + + E+
Sbjct: 1825 ASKCIEVEDEMELSPL-NLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYD 1883
Query: 361 YVTVRQDEKMELAKLL 408
+ +R E+ + +L+
Sbjct: 1884 MIPIRPGEEDTVRRLI 1899
>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
predicted protein [Populus trichocarpa]
Length = 2157
Score = 229 bits (583), Expect = 2e-58
Identities = 113/136 (83%), Positives = 121/136 (88%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
VLGTVQN + A +WLG TYL+IRM RNPT YGL+PD L RD L + RADL+HSAA ILD
Sbjct: 910 VLGTVQNAREACHWLGYTYLYIRMLRNPTLYGLAPDVLTRDITLEERRADLIHSAAAILD 969
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
K+NLVKYDRKSGYFQ TDLGRIASYYYITHGTI+TYNEHLKPTM DIELCRLFSLSEEFK
Sbjct: 970 KNNLVKYDRKSGYFQGTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFK 1029
Query: 361 YVTVRQDEKMELAKLL 408
YVTVRQDEKMELAKLL
Sbjct: 1030 YVTVRQDEKMELAKLL 1045
Score = 63.5 bits (153), Expect = 2e-08
Identities = 40/136 (29%), Positives = 72/136 (52%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
V G ++N + A+++L T+ + R+ +NP +Y L + R L D ++LV + T L+
Sbjct: 1752 VAGVIENKQDAVDYLTWTFTYRRLTQNPNYYNLQGVSHRH---LSDHLSELVENTLTDLE 1808
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
+S V + + +LG IASYYYI++ TI ++ L P L + S + E+
Sbjct: 1809 RSKCVAIEEDMDLSPL-NLGMIASYYYISYTTIERFSSSLTPKTKMKGLLEILSSASEYA 1867
Query: 361 YVTVRQDEKMELAKLL 408
+ +R E+ L +L+
Sbjct: 1868 QLPIRPGEEEVLRRLI 1883
>ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA
helicase [Arabidopsis thaliana]
gi|330255004|gb|AEC10098.1| U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2172
Score = 229 bits (583), Expect = 2e-58
Identities = 110/136 (80%), Positives = 125/136 (91%)
Frame = +1
Query: 1 VLGTVQNVKAALNWLGRTYLFIRMGRNPTFYGLSPDALRRDRLLVDWRADLVHSAATILD 180
VLGT+QN + A +WLG TYL++RM RNPT YG+SPDAL +D LL + RADL+HSAATILD
Sbjct: 931 VLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILD 990
Query: 181 KSNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMSDIELCRLFSLSEEFK 360
K+NL+KYDRKSG+FQVTDLGRIASYYYI+HGTIA YNE+LKPTM+DIELCRLFSLSEEFK
Sbjct: 991 KNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEEFK 1050
Query: 361 YVTVRQDEKMELAKLL 408
YVTVRQDEKMELAKLL
Sbjct: 1051 YVTVRQDEKMELAKLL 1066