BLASTX nr result

ID: Atractylodes21_contig00021004 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00021004
         (218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron sp...   108   4e-22
ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_002305824.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19
ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron sp...    95   7e-18
ref|XP_003565295.1| PREDICTED: chloroplastic group IIB intron sp...    94   9e-18

>ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
           CRS2, chloroplastic [Vitis vinifera]
           gi|296087264|emb|CBI33638.3| unnamed protein product
           [Vitis vinifera]
          Length = 246

 Score =  108 bits (270), Expect = 4e-22
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = -1

Query: 173 LRVSASLPEPNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMVDRISQEERIVMNT 3
           L VSASLP+ NG+KVEYTPWLIVGLGNPGNKYHGTRHNVGFEM+DRISQEE I++NT
Sbjct: 33  LCVSASLPDANGIKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDRISQEEGILLNT 89


>ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1|
           predicted protein [Populus trichocarpa]
          Length = 244

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 48/64 (75%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
 Frame = -1

Query: 191 NLKRNGLRVSASLPE-PNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMVDRISQEERI 15
           NL    L V ASLP+  NGVKVEYTPWLIVGLGNPG KYHGTRHNVGFEM+DRI+Q E +
Sbjct: 24  NLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNPGTKYHGTRHNVGFEMIDRIAQAEGV 83

Query: 14  VMNT 3
           +MNT
Sbjct: 84  LMNT 87


>ref|XP_002305824.1| predicted protein [Populus trichocarpa] gi|222848788|gb|EEE86335.1|
           predicted protein [Populus trichocarpa]
          Length = 161

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/64 (75%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
 Frame = -1

Query: 191 NLKRNGLRVSASLPEP-NGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMVDRISQEERI 15
           NL    L V ASLP+  NGVKVEYTPWLIVGLGNPG KYHGTRHNVGFEM+DRI+Q E +
Sbjct: 24  NLVSVRLCVRASLPDNGNGVKVEYTPWLIVGLGNPGTKYHGTRHNVGFEMIDRIAQAEGV 83

Query: 14  VMNT 3
           +MNT
Sbjct: 84  LMNT 87


>ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
           CRS2-B, chloroplastic-like [Cucumis sativus]
           gi|449519774|ref|XP_004166909.1| PREDICTED:
           chloroplastic group IIB intron splicing facilitator
           CRS2-B, chloroplastic-like [Cucumis sativus]
          Length = 249

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = -1

Query: 206 SQNPSNLKRNGLRVSASLPEPNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMVDRISQ 27
           S  P    R  +R S+   + NG+KVEYTPWLIVGLGNPGNKYHGTRHNVGFEM+D I+Q
Sbjct: 25  STKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQ 84

Query: 26  EERIVMNT 3
            + I+MNT
Sbjct: 85  AQGILMNT 92


>ref|XP_003565295.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
           CRS2, chloroplastic-like [Brachypodium distachyon]
          Length = 369

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 44/61 (72%), Positives = 48/61 (78%)
 Frame = -1

Query: 185 KRNGLRVSASLPEPNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMVDRISQEERIVMN 6
           +R  L V AS+P+P     EYTPWLI GLGNPG KYHGTRHNVGFEMVDRI+Q E IVMN
Sbjct: 152 RRTRLTVVASVPDPAARPAEYTPWLIAGLGNPGGKYHGTRHNVGFEMVDRIAQVEGIVMN 211

Query: 5   T 3
           T
Sbjct: 212 T 212


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