BLASTX nr result

ID: Atractylodes21_contig00019480 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00019480
         (920 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330570.1| high mobility group family [Populus trichoca...   256   5e-66
ref|XP_002531766.1| transcription factor, putative [Ricinus comm...   251   2e-64
ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 ...   234   2e-59
ref|XP_003527572.1| PREDICTED: LOW QUALITY PROTEIN: high mobilit...   201   2e-49
ref|XP_002884962.1| high mobility group family protein [Arabidop...   201   2e-49

>ref|XP_002330570.1| high mobility group family [Populus trichocarpa]
           gi|222872128|gb|EEF09259.1| high mobility group family
           [Populus trichocarpa]
          Length = 316

 Score =  256 bits (654), Expect = 5e-66
 Identities = 128/241 (53%), Positives = 173/241 (71%), Gaps = 15/241 (6%)
 Frame = +2

Query: 2   KFKIPIIGGKSLDLHRLFIEVTSRGGIEKIVSDRRWREVMAVFKFGPTITNASFVLRKYY 181
           KF +P +GGK+LDLH LF+EVTSRGGIEK+++DR+W+EV+  F F  TIT+ASFVLRK+Y
Sbjct: 62  KFMVPTVGGKALDLHHLFVEVTSRGGIEKVITDRKWKEVITAFNFPTTITSASFVLRKHY 121

Query: 182 LSLLYHFEQVYYFRKKTPTIVPADTTN--RLSDGSVS---GSVKNLFSARRIVEVGGQVT 346
           LSLLYHFEQVY+F K+ P +   D  N   L +GS +   G++ N FS+ + +++G  V+
Sbjct: 122 LSLLYHFEQVYHFNKQIPLVSGTDAMNGRSLVNGSATLEEGAITNQFSSSQQLQIGCSVS 181

Query: 347 GTIDKRFDHGYVVTVDMGTEKLSGFLYHLP---------SESPAPSHGTHNMYQLALREP 499
           G ID +FD+GY+VTV++GT +L G LYH+P           S  P        +LALR+P
Sbjct: 182 GIIDGKFDNGYLVTVNLGTNQLKGVLYHIPHTFHESQDSRSSDLPPRRRRKRSRLALRDP 241

Query: 500 S-PEPDPSGYDVFFTEHYIRLKPLYHGQENVIRKRIQVLWSTLTQEEKQVYQEKGSRGRE 676
           S P+ + SGY+ FFTEHY +LKPL+HGQE VI K+I +LW+ LT+ EKQVYQEKG R +E
Sbjct: 242 SQPKSNRSGYNFFFTEHYAQLKPLHHGQEKVISKKIGLLWNNLTEAEKQVYQEKGLRDKE 301

Query: 677 R 679
           +
Sbjct: 302 K 302


>ref|XP_002531766.1| transcription factor, putative [Ricinus communis]
           gi|223528602|gb|EEF30622.1| transcription factor,
           putative [Ricinus communis]
          Length = 313

 Score =  251 bits (640), Expect = 2e-64
 Identities = 126/239 (52%), Positives = 168/239 (70%), Gaps = 13/239 (5%)
 Frame = +2

Query: 2   KFKIPIIGGKSLDLHRLFIEVTSRGGIEKIVSDRRWREVMAVFKFGPTITNASFVLRKYY 181
           KF +P +GGK+LDLH LF+EVTSRGG+EK+V DR+W+EV+A F F  TIT+ASFVLRKYY
Sbjct: 61  KFMVPTVGGKALDLHHLFVEVTSRGGLEKVVRDRKWKEVIAAFNFPSTITSASFVLRKYY 120

Query: 182 LSLLYHFEQVYYFRKKTPTIVPADTTN-RLSDGS--VSGSVKNLFSARRIVEVGGQVTGT 352
           LSLLYHFEQVY F K+ P++  +D  N  L +GS  V G   N F     +++G  V GT
Sbjct: 121 LSLLYHFEQVYQFHKQVPSVSVSDDVNGNLVNGSATVEGVTVNQFPGSSQLQLGSSVNGT 180

Query: 353 IDKRFDHGYVVTVDMGTEKLSGFLYHLPSE---------SPAPSHGTHNMYQLALREPS- 502
           ID +FD+GY++TV +G+E+L G LYH+P+E         S  P        +L LR+PS 
Sbjct: 181 IDGKFDNGYLITVTLGSEQLKGVLYHIPNEFYMSQSSHNSDLPPRRHRKRSRLLLRDPSR 240

Query: 503 PEPDPSGYDVFFTEHYIRLKPLYHGQENVIRKRIQVLWSTLTQEEKQVYQEKGSRGRER 679
           P+   SGY+ FF EHY +LKPL++GQE VI K+I +LW+ LT+ EK++YQEKG + +ER
Sbjct: 241 PKSHRSGYNFFFAEHYAQLKPLHYGQEKVISKKIGLLWNNLTEAEKEIYQEKGLKDKER 299


>ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 [Vitis vinifera]
           gi|296090037|emb|CBI39856.3| unnamed protein product
           [Vitis vinifera]
          Length = 331

 Score =  234 bits (598), Expect = 2e-59
 Identities = 127/244 (52%), Positives = 162/244 (66%), Gaps = 18/244 (7%)
 Frame = +2

Query: 2   KFKIPIIGGKSLDLHRLFIEVTSRGGIEKIVSDRRWREVMAVFKFGPTITNASFVLRKYY 181
           KF +P  GGK+LDLHRLF+EVTSRGG+EK++ DR+W+EV  VFKF  TIT+ASFVLRKYY
Sbjct: 71  KFMVPTTGGKALDLHRLFVEVTSRGGLEKVIRDRKWKEVTTVFKFPTTITSASFVLRKYY 130

Query: 182 LSLLYHFEQVYYFRKKTPTIVPADTTNRLS-DGSVS------GSVKNLFSARRIVEVGGQ 340
           LSLL+H+EQVYYFRK++  I  AD  N    +GS +       +  N       ++ G  
Sbjct: 131 LSLLHHYEQVYYFRKQSFPISMADPLNSSPINGSATTPVFQDSATTNDLPVSPRLQPGCL 190

Query: 341 VTGTIDKRFDHGYVVTVDMGTEKLSGFLYHLPSE----------SPAPSHGTHNMYQLAL 490
           VTGTID +FD+GY+V+V++G++ L G LYH+P+           S  P        QLAL
Sbjct: 191 VTGTIDGKFDNGYLVSVNLGSDVLKGVLYHIPNNESHMSRSSNASAVPPPRNWKRSQLAL 250

Query: 491 REPS-PEPDPSGYDVFFTEHYIRLKPLYHGQENVIRKRIQVLWSTLTQEEKQVYQEKGSR 667
           R+PS P+   SGY+ FF E+Y RLKPLY GQE  I K+I  LW+ LT  EKQVYQEKG  
Sbjct: 251 RDPSRPKRSQSGYNFFFAENYARLKPLYSGQERAISKKIGFLWNRLTDAEKQVYQEKGMI 310

Query: 668 GRER 679
            +ER
Sbjct: 311 DKER 314


>ref|XP_003527572.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
           10-like [Glycine max]
          Length = 339

 Score =  201 bits (512), Expect = 2e-49
 Identities = 119/261 (45%), Positives = 152/261 (58%), Gaps = 35/261 (13%)
 Frame = +2

Query: 2   KFKIPIIGGKSLDLHRLFIEVTSRGGIEKIVSDRRWREVMAVFKFGPTITNASFVLRKYY 181
           K+KI  +GG  LDLHRLF+EVTSRGGIEK++ DR+W+EV+  F F  TITNASF++RK Y
Sbjct: 69  KYKISTVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITNASFMVRKSY 128

Query: 182 LSLLYHFEQVYYF-RKKTPTIVPADTTNRLSDGSVSGSVKNLFSARRIVEVGG------- 337
           LS+LYHFEQVYYF R+  P   P        D  + G     +S+  I EV         
Sbjct: 129 LSMLYHFEQVYYFGRQGIPPTTP--------DLMIRGQSCQPYSSTTIPEVAAVNDSPVQ 180

Query: 338 ---------QVTGTIDKRFDHGYVVTVDMGTEKLS----GFLYHLPSESPAPSHGTHNMY 478
                     V+GTID +FD GYVVTV +G+E+L      FL   P      +H  H + 
Sbjct: 181 STPVQAHDDMVSGTIDAKFDVGYVVTVTLGSEQLQVSCFMFLITCPRVLMPKAHLVHRIL 240

Query: 479 -------------QLALREP-SPEPDPSGYDVFFTEHYIRLKPLYHGQENVIRKRIQVLW 616
                        + A R+P  P+ + SGY+ FF E+Y RLKP YHGQE  I KRI  LW
Sbjct: 241 VMTRXNLQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLW 300

Query: 617 STLTQEEKQVYQEKGSRGRER 679
           + L++ E+QVYQEKG R +ER
Sbjct: 301 NNLSEAERQVYQEKGIRDKER 321


>ref|XP_002884962.1| high mobility group family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297330802|gb|EFH61221.1| high mobility group
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 318

 Score =  201 bits (512), Expect = 2e-49
 Identities = 108/242 (44%), Positives = 143/242 (59%), Gaps = 18/242 (7%)
 Frame = +2

Query: 8   KIPIIGGKSLDLHRLFIEVTSRGGIEKIVSDRRWREVMAVFKFGPTITNASFVLRKYYLS 187
           K+P +GG +LDLHRLFIEVTSRGGIE++V DR+W++V+  F F  TIT+ASFVLRKYYL 
Sbjct: 61  KVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKDVIGAFSFPTTITSASFVLRKYYLK 120

Query: 188 LLYHFEQVYYFRKKTPTIVPADTTNRLSDGSVSGSVKNLFSARRIVEVGGQVTGTIDKRF 367
            L+  E VYY  K   +I   D   +    S++    N        +VG +V G ID +F
Sbjct: 121 FLFQLEHVYYLEKPVSSIQSTDEAMK----SLANESPNPEEGIDEPQVGYEVQGFIDGKF 176

Query: 368 DHGYVVTVDMGTEKLSGFLYHLPSESPAPSHGTHNMYQLALREPS--------------- 502
           D+GY+VT+ +G+++L G +YH+P     PS     M   +   PS               
Sbjct: 177 DNGYLVTMKLGSQELKGVIYHIPQ---TPSQSQQTMETASATVPSSQRRHRKKSKLAVVD 233

Query: 503 ---PEPDPSGYDVFFTEHYIRLKPLYHGQENVIRKRIQVLWSTLTQEEKQVYQEKGSRGR 673
              P+   SGY+ FF E Y RLKP YHGQE  I K+I  +WS LT+ EKQVYQ+KG +  
Sbjct: 234 NQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDV 293

Query: 674 ER 679
           ER
Sbjct: 294 ER 295


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