BLASTX nr result

ID: Atractylodes21_contig00017749 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00017749
         (379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543085.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik...    47   2e-06
ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik...    47   3e-06
ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|2...    42   3e-06

>ref|XP_003543085.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max]
          Length = 919

 Score = 46.6 bits (109), Expect(2) = 2e-06
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -3

Query: 338 KVEMAQKDVPEAVFGGLVRKRDEEAEN 258
           K+E+AQKDVP AVFGGL+RKRDE   N
Sbjct: 866 KIEIAQKDVPSAVFGGLIRKRDENENN 892



 Score = 30.0 bits (66), Expect(2) = 2e-06
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -2

Query: 252 AMKNGDGGSRLGALERIKQMRQ 187
           A K+ D G RLGALER+K+++Q
Sbjct: 897 AAKDKDNGIRLGALERMKRLKQ 918


>ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max]
          Length = 918

 Score = 46.6 bits (109), Expect(2) = 3e-06
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -3

Query: 338 KVEMAQKDVPEAVFGGLVRKRDEEAEN 258
           K+E+AQKDVP AVFGGL+RKRDE   N
Sbjct: 865 KIEIAQKDVPSAVFGGLIRKRDENENN 891



 Score = 29.3 bits (64), Expect(2) = 3e-06
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -2

Query: 246 KNGDGGSRLGALERIKQMRQ 187
           K+ D  +RLGALERIK++RQ
Sbjct: 898 KDKDNENRLGALERIKRLRQ 917


>ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|222847967|gb|EEE85514.1|
           predicted protein [Populus trichocarpa]
          Length = 908

 Score = 42.0 bits (97), Expect(2) = 3e-06
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -3

Query: 338 KVEMAQKDVPEAVFGGLVRKRDEEAEND 255
           KVE+AQKDVP AVFGGL  KR+E  ++D
Sbjct: 860 KVEIAQKDVPSAVFGGLAGKREEPEKDD 887



 Score = 33.9 bits (76), Expect(2) = 3e-06
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = -2

Query: 237 DGGSRLGALERIKQMRQG 184
           DGGSRLGALERIK++++G
Sbjct: 890 DGGSRLGALERIKRLKRG 907


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