BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00017607
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containi...   367   3e-99
ref|XP_002527978.1| pentatricopeptide repeat-containing protein,...   345   1e-92
ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp....   332   1e-88
ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containi...   324   3e-86
ref|NP_568460.1| pentatricopeptide repeat-containing protein [Ar...   324   3e-86

>ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like
            [Vitis vinifera]
          Length = 580

 Score =  367 bits (943), Expect = 3e-99
 Identities = 181/336 (53%), Positives = 232/336 (69%), Gaps = 3/336 (0%)
 Frame = +2

Query: 2    VHALCKKGXXXXXXXXXXXXTDENSQR---NLIASTILMDNSFKNGDTSLALTLWGEIRE 172
            +HALCKKG             D++  +   ++I STI MD   K GD   AL  W E+ +
Sbjct: 243  IHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQ 302

Query: 173  RSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRIDE 352
            R  ++DVVAYNV++HG CL  D+  AY Y  EMFK GLLPD FTYNTLIS  CK   +DE
Sbjct: 303  RGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDE 362

Query: 353  ACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPALPTWNVIID 532
            ACY++ VM +MG APD +SY ++IQGLC+ GDV+ A++ L CMLE  MVP    WNV+ID
Sbjct: 363  ACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVID 422

Query: 533  GYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPLP 712
            G+G++GD   AL IRDQM+++G+ PNVFTYNALIH  IK G I +AH +  EMLL G  P
Sbjct: 423  GHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYP 482

Query: 713  DTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFF 892
            D VTYNLL+GA   FG ++ A ++YD+ML+RGY+PDI+TYTELI+G+C+RG V EA+   
Sbjct: 483  DVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCIRGHVMEAEELL 542

Query: 893  AFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSV 1000
            A   LQ S L+IDH PFQILI+KY + R    AY +
Sbjct: 543  A--KLQRSGLSIDHAPFQILIQKYCRTRVPGRAYDL 576



 Score =  153 bits (387), Expect = 8e-35
 Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 3/302 (0%)
 Frame = +2

Query: 104  LMDNSFKNGDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIG 283
            ++ N    G    AL L  ++ ++    DV+ +N +V+G C   D+  A N V EM +IG
Sbjct: 137  MIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIG 196

Query: 284  LLPDNFTYNTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAH 463
              P+  T+NT I   C    +D+A YL++ M   G+ P++V+YNILI  LC  G +  A 
Sbjct: 197  PSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDAR 256

Query: 464  KLLTCMLEKSM---VPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALI 634
            KLL  +L+         + T  + +DG  K GD  +AL   D+M+  G   +V  YN LI
Sbjct: 257  KLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLI 316

Query: 635  HMLIKSGEIAEAHLLMTEMLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYD 814
            H      ++  A+    EM   G LPD  TYN L+    K G+L  A  ++  M K G  
Sbjct: 317  HGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAA 376

Query: 815  PDIVTYTELIKGYCLRGKVKEADRFFAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAY 994
            PD+++Y  +I+G C+ G V  A++F     + ++ +  + + + ++I  + +  D   A 
Sbjct: 377  PDLISYKMIIQGLCIHGDVIRANQFLV--CMLENLMVPEPLIWNVVIDGHGRHGDLSNAL 434

Query: 995  SV 1000
            S+
Sbjct: 435  SI 436


>ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532604|gb|EEF34390.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 621

 Score =  345 bits (886), Expect = 1e-92
 Identities = 173/326 (53%), Positives = 225/326 (69%), Gaps = 2/326 (0%)
 Frame = +2

Query: 2    VHALCKKGXXXXXXXXXXXXTDENSQR--NLIASTILMDNSFKNGDTSLALTLWGEIRER 175
            VHALCK+G             D+N +   NLI STILMD   KNGD   AL +W  + + 
Sbjct: 237  VHALCKRGLLEDAKKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQN 296

Query: 176  SKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRIDEA 355
            +  +D VAYNV++HG CL  ++ +AY+Y  +M K GLLPD FTYNTLIS LCKA ++ EA
Sbjct: 297  NTLMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEA 356

Query: 356  CYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPALPTWNVIIDG 535
            CY++ VM RMGVAPD++SY I+IQGLC  GDV+ A++ L CMLEKSMVP    WN+IIDG
Sbjct: 357  CYIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDG 416

Query: 536  YGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPLPD 715
            + + GD   A  IRDQM+++GV PNVFTYNALIH  +K+G I +A+ L   ML  G  PD
Sbjct: 417  FARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPD 476

Query: 716  TVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFA 895
             +TYNLL+G     G +  A Q+Y +ML+ G++PDI+TYTELI+G C+RG +KEA   FA
Sbjct: 477  VITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGNMKEAKELFA 536

Query: 896  FDMLQDSNLAIDHVPFQILIKKYFKM 973
               LQ++ L +DHVPFQ+LIK  F +
Sbjct: 537  --KLQNTGLTVDHVPFQLLIKNTFNL 560



 Score =  145 bits (365), Expect = 3e-32
 Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 3/299 (1%)
 Frame = +2

Query: 128  GDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTY 307
            G    AL L  ++  +    D++ +N +V+G C   D+  A   + EM +IG  P+  T+
Sbjct: 139  GKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATF 198

Query: 308  NTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCML- 484
            NT I   C    +D+A YL++ M   GV P+RV+ NIL+  LC  G +  A KLL  +L 
Sbjct: 199  NTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGELLD 258

Query: 485  --EKSMVPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGE 658
              EK+ V  L T  +++DG  K GD  +AL I   M       +   YN LIH    +  
Sbjct: 259  DNEKARV-NLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRN 317

Query: 659  IAEAHLLMTEMLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTE 838
            +  A+    +ML  G LPD  TYN L+    K G LY A  ++D ML+ G  PD ++Y  
Sbjct: 318  MKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKI 377

Query: 839  LIKGYCLRGKVKEADRFFAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWL 1015
            +I+G C RG V +A+      ML+ S +   HV + ++I  + +  D   A+S+  + L
Sbjct: 378  VIQGLCTRGDVLKANEHL-HCMLEKSMVPEAHV-WNLIIDGFARCGDSANAFSIRDQML 434



 Score =  110 bits (274), Expect = 1e-21
 Identities = 78/253 (30%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
 Frame = +2

Query: 311 TLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEK 490
           +L+  LC A ++  A +L   +   G  PD +++N L+ GLC  GD+  A  L+  MLE 
Sbjct: 130 SLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEI 189

Query: 491 SMVPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEA 670
              P   T+N  I GY    +  KAL++   M   GV PN  T N L+H L K G + +A
Sbjct: 190 GPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDA 249

Query: 671 HLLMTEML-------------------------------------LAGPLPDTVTYNLLV 739
             L+ E+L                                         L D+V YN+L+
Sbjct: 250 KKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLI 309

Query: 740 GAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAFDMLQDSN 919
                  ++  AY    DMLKRG  PDI TY  LI G C  GK+ EA   +  D++    
Sbjct: 310 HGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEA--CYIHDVMLRMG 367

Query: 920 LAIDHVPFQILIK 958
           +A D + ++I+I+
Sbjct: 368 VAPDQISYKIVIQ 380


>ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297317966|gb|EFH48388.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 588

 Score =  332 bits (851), Expect = 1e-88
 Identities = 165/342 (48%), Positives = 230/342 (67%), Gaps = 4/342 (1%)
 Frame = +2

Query: 2    VHALCKKGXXXXXXXXXXXXTDENSQRN----LIASTILMDNSFKNGDTSLALTLWGEIR 169
            VHALC+KG              ++SQ N    ++  TILMD+ FKNG+   AL +W E+ 
Sbjct: 231  VHALCQKGVIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMS 290

Query: 170  ERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRID 349
            +++   D V YNVI+ G C   +++ AY ++ +M K G+ PD FTYNTLISALCKA + D
Sbjct: 291  QKNVPTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFD 350

Query: 350  EACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPALPTWNVII 529
             AC L+  M  +GVAPD++SY ++IQGLC+ GDV  A++ L  ML++S++P +  WNV+I
Sbjct: 351  VACDLHGTMQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVI 410

Query: 530  DGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPL 709
            DGYG+YGD   AL + + M++YGV PNV+T NALIH  +K G + +A  +  EM      
Sbjct: 411  DGYGRYGDTSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIH 470

Query: 710  PDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRF 889
            PDT TYNLLVGA    GHL  A+Q+YD+MLKRG  PDI+TYTEL++G C +G++KEA+  
Sbjct: 471  PDTTTYNLLVGAACTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESL 530

Query: 890  FAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWL 1015
             +   +Q S + +DHVPF IL+KKY +++  D AY VY+KWL
Sbjct: 531  LS--RMQVSGITMDHVPFLILVKKYTRLQRPDEAYLVYKKWL 570



 Score =  132 bits (331), Expect = 2e-28
 Identities = 96/310 (30%), Positives = 158/310 (50%), Gaps = 6/310 (1%)
 Frame = +2

Query: 89   IASTILMDNSFKNGDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNE 268
            I S+I+ D   + G    AL L  ++        ++ +N +++G C    +  A   V E
Sbjct: 121  IHSSIMRDLCLQ-GKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVRE 179

Query: 269  MFKIGLLPDNFTYNTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLC---V 439
            M ++G  P+  +YNTLI  LC    +D+A YL++ + + G+ P+RV+ NI++  LC   V
Sbjct: 180  MREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGV 239

Query: 440  VGDVVTAHKLLTCMLEKSMVPA---LPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPN 610
            +G+  T  KLL  +L+ S V A   + T  +++D   K G+  +AL +  +M    V  +
Sbjct: 240  IGNNNT--KLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTD 297

Query: 611  VFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYD 790
               YN +I  L  SG +  A+  M +M+  G  PD  TYN L+ A  K G    A  ++ 
Sbjct: 298  SVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHG 357

Query: 791  DMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAFDMLQDSNLAIDHVPFQILIKKYFK 970
             M   G  PD ++Y  +I+G C++G V  A+ F    ML+ S L  + + + ++I  Y +
Sbjct: 358  TMQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQ-SMLKRS-LLPEVLLWNVVIDGYGR 415

Query: 971  MRDFDGAYSV 1000
              D   A SV
Sbjct: 416  YGDTSCALSV 425



 Score =  110 bits (274), Expect = 1e-21
 Identities = 81/350 (23%), Positives = 151/350 (43%), Gaps = 39/350 (11%)
 Frame = +2

Query: 86   LIASTILMDNSFKNGDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVN 265
            LI    L++   K G    A  L  E+RE     + V+YN ++ G C   +V  A    +
Sbjct: 154  LIMHNHLLNGLCKLGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFS 213

Query: 266  EMFKIGLLPDNFTYNTLISALC-------------------------------------- 331
             + K G+ P+  T N ++ ALC                                      
Sbjct: 214  TLNKYGIKPNRVTCNIIVHALCQKGVIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSC 273

Query: 332  -KAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPAL 508
             K   + +A  ++  M +  V  D V YN++I+GLC  G++V A+  +  M+++ + P +
Sbjct: 274  FKNGNVVQALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDV 333

Query: 509  PTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTE 688
             T+N +I    K G    A  +   M   GV+P+  +Y  +I  L   G++  A+  +  
Sbjct: 334  FTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQS 393

Query: 689  MLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGK 868
            ML    LP+ + +N+++    ++G    A  V + ML  G  P++ T   LI GY   G+
Sbjct: 394  MLKRSLLPEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGR 453

Query: 869  VKEADRFFAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWLR 1018
            +   D ++  + ++ + +  D   + +L+     +     A+ +Y + L+
Sbjct: 454  L--IDAWWVKNEMRSTKIHPDTTTYNLLVGAACTLGHLRLAFQLYDEMLK 501



 Score =  100 bits (248), Expect = 1e-18
 Identities = 70/277 (25%), Positives = 118/277 (42%), Gaps = 39/277 (14%)
 Frame = +2

Query: 305  YNTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCML 484
            +++++  LC   ++D A +L   M R G  P  + +N L+ GLC +G +  A  L+  M 
Sbjct: 122  HSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMR 181

Query: 485  EKSMVPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHML------- 643
            E    P   ++N +I G     +  KAL++   +  YG+ PN  T N ++H L       
Sbjct: 182  EMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIG 241

Query: 644  --------------------------------IKSGEIAEAHLLMTEMLLAGPLPDTVTY 727
                                             K+G + +A  +  EM       D+V Y
Sbjct: 242  NNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVY 301

Query: 728  NLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAFDML 907
            N+++      G++ +AY    DM+KRG +PD+ TY  LI   C  GK   A        +
Sbjct: 302  NVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHG--TM 359

Query: 908  QDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWLR 1018
            Q+  +A D + ++++I+      D D A    Q  L+
Sbjct: 360  QNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLK 396


>ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like
            [Glycine max]
          Length = 577

 Score =  324 bits (830), Expect = 3e-86
 Identities = 164/346 (47%), Positives = 221/346 (63%), Gaps = 3/346 (0%)
 Frame = +2

Query: 2    VHALCKKGXXXXXXXXXXXXTDENSQRN---LIASTILMDNSFKNGDTSLALTLWGEIRE 172
            VHALC+KG              ++ +++   L+ ST+ MD+ FK+G    AL LW ++ +
Sbjct: 231  VHALCEKGLLMEAKRMLEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQ 290

Query: 173  RSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRIDE 352
               KVDVVAYNV+++G C    + +AY Y  EMFK GLLPD FTYN +I ALCK  +I E
Sbjct: 291  NCTKVDVVAYNVLINGFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISE 350

Query: 353  ACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPALPTWNVIID 532
            ACY   VM  MG+ PD+++Y I+I+GLC  G++V A  LL CML   MVP    WN+IID
Sbjct: 351  ACYTVGVMSNMGIMPDQITYQIVIRGLCFAGEIVRAKHLLWCMLNNLMVPKPLIWNLIID 410

Query: 533  GYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPLP 712
             YG+Y D   A   RDQM+++GV PNVFTYNALI   +KSG    A  L  EM+     P
Sbjct: 411  LYGRYNDLSNAFFTRDQMLSFGVCPNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFP 470

Query: 713  DTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFF 892
            D VTYNLL+GA    G L  A  ++D M++RGY+PD++TYTEL++G+C+RGK+KEA+  +
Sbjct: 471  DVVTYNLLIGAACNIGRLDFALLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELY 530

Query: 893  AFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWLRMDQG 1030
            A   +  S L  DHVP QIL  KY K+++   A++ YQ WL   +G
Sbjct: 531  A--KILKSGLLNDHVPVQILFNKYCKLKEPVIAFNFYQDWLESKKG 574



 Score =  141 bits (355), Expect = 4e-31
 Identities = 94/294 (31%), Positives = 150/294 (51%), Gaps = 4/294 (1%)
 Frame = +2

Query: 125  NGDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFT 304
            +G    A+ LWG++ ++    DV  +N IV+G C    +  A   V EM + G  P+  T
Sbjct: 132  DGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGPRPNCAT 191

Query: 305  YNTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCML 484
            YNTLI   C    +D A YL++ M   G+ P+RV+  IL+  LC  G ++ A ++L  +L
Sbjct: 192  YNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRMLEEVL 251

Query: 485  ---EKSMVPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSG 655
               ++  +P L    V +D Y K G   +AL++ +QM+      +V  YN LI+   KS 
Sbjct: 252  KDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLINGFCKSQ 311

Query: 656  EIAEAHLLMTEMLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYT 835
            ++  A+    EM   G LPD  TYN+++GA  K G +  A      M   G  PD +TY 
Sbjct: 312  QMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIMPDQITYQ 371

Query: 836  ELIKGYCLRGKVKEADRFFAFDMLQDSNLAIDH-VPFQILIKKYFKMRDFDGAY 994
             +I+G C  G++  A +   + ML  +NL +   + + ++I  Y +  D   A+
Sbjct: 372  IVIRGLCFAGEIVRA-KHLLWCML--NNLMVPKPLIWNLIIDLYGRYNDLSNAF 422



 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 38/252 (15%)
 Frame = +2

Query: 317 ISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSM 496
           I  LC   ++  A +L+  M + GV  D  ++N ++ GLC +G +  A  ++  MLE   
Sbjct: 126 IRRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGP 185

Query: 497 VPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHML----------- 643
            P   T+N +I GY       +AL++   M   G+ PN  T   L+H L           
Sbjct: 186 RPNCATYNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKR 245

Query: 644 ---------------------------IKSGEIAEAHLLMTEMLLAGPLPDTVTYNLLVG 742
                                       K G I +A  L  +ML      D V YN+L+ 
Sbjct: 246 MLEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLIN 305

Query: 743 AESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAFDMLQDSNL 922
              K   +  AY    +M K+G  PD  TY  +I   C  GK+ EA   +   ++ +  +
Sbjct: 306 GFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEA--CYTVGVMSNMGI 363

Query: 923 AIDHVPFQILIK 958
             D + +QI+I+
Sbjct: 364 MPDQITYQIVIR 375


>ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g24830 gi|22655280|gb|AAM98230.1| putative protein
            [Arabidopsis thaliana] gi|30725398|gb|AAP37721.1|
            At5g24830 [Arabidopsis thaliana]
            gi|332005984|gb|AED93367.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 593

 Score =  324 bits (830), Expect = 3e-86
 Identities = 161/342 (47%), Positives = 226/342 (66%), Gaps = 4/342 (1%)
 Frame = +2

Query: 2    VHALCKKGXXXXXXXXXXXXTDENSQRN----LIASTILMDNSFKNGDTSLALTLWGEIR 169
            VHALC+KG              ++SQ N    ++  TILMD+ FKNG+   AL +W E+ 
Sbjct: 233  VHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMS 292

Query: 170  ERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRID 349
            +++   D V YNVI+ G C   +++ AY ++ +M K G+ PD FTYNTLISALCK  + D
Sbjct: 293  QKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFD 352

Query: 350  EACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPALPTWNVII 529
            EAC L+  M   GVAPD++SY ++IQGLC+ GDV  A++ L  ML+ S++P +  WNV+I
Sbjct: 353  EACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVI 412

Query: 530  DGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPL 709
            DGYG+YGD   AL + + M++YGV PNV+T NALIH  +K G + +A  +  EM      
Sbjct: 413  DGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIH 472

Query: 710  PDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRF 889
            PDT TYNLL+GA    GHL  A+Q+YD+ML+RG  PDI+TYTEL++G C +G++K+A+  
Sbjct: 473  PDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESL 532

Query: 890  FAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWL 1015
             +   +Q + + IDHVPF IL KKY +++    AY VY+KWL
Sbjct: 533  LS--RIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWL 572



 Score =  132 bits (333), Expect = 1e-28
 Identities = 85/274 (31%), Positives = 140/274 (51%), Gaps = 4/274 (1%)
 Frame = +2

Query: 191  VVAYNVIVHGSCLCWDVIVAYNYVNEMFKIGLLPDNFTYNTLISALCKAKRIDEACYLYT 370
            ++ +N +++G C    +  A   V EM ++G  P+  +YNTLI  LC    +D+A YL+ 
Sbjct: 156  LITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFN 215

Query: 371  VMPRMGVAPDRVSYNILIQGLCVVGDVVTAH-KLLTCMLEKSMVPA---LPTWNVIIDGY 538
             M + G+ P+RV+ NI++  LC  G +   + KLL  +L+ S   A   +    +++D  
Sbjct: 216  TMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSC 275

Query: 539  GKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTEMLLAGPLPDT 718
             K G+  +AL +  +M    V  +   YN +I  L  SG +  A+  M +M+  G  PD 
Sbjct: 276  FKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDV 335

Query: 719  VTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAF 898
             TYN L+ A  K G    A  ++  M   G  PD ++Y  +I+G C+ G V  A+ F   
Sbjct: 336  FTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFL-L 394

Query: 899  DMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSV 1000
             ML+ S+L  + + + ++I  Y +  D   A SV
Sbjct: 395  SMLK-SSLLPEVLLWNVVIDGYGRYGDTSSALSV 427



 Score =  117 bits (293), Expect = 6e-24
 Identities = 85/350 (24%), Positives = 154/350 (44%), Gaps = 39/350 (11%)
 Frame = +2

Query: 86   LIASTILMDNSFKNGDTSLALTLWGEIRERSKKVDVVAYNVIVHGSCLCWDVIVAYNYVN 265
            LI    L++   K G    A  L  E+RE     + V+YN ++ G C   +V  A    N
Sbjct: 156  LITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFN 215

Query: 266  EMFKIGLLPDNFTYNTLISALC-------------------------------------- 331
             M K G+ P+  T N ++ ALC                                      
Sbjct: 216  TMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSC 275

Query: 332  -KAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCMLEKSMVPAL 508
             K   + +A  ++  M +  V  D V YN++I+GLC  G++V A+  +  M+++ + P +
Sbjct: 276  FKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDV 335

Query: 509  PTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHMLIKSGEIAEAHLLMTE 688
             T+N +I    K G   +A  +   M   GV+P+  +Y  +I  L   G++  A+  +  
Sbjct: 336  FTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLS 395

Query: 689  MLLAGPLPDTVTYNLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGK 868
            ML +  LP+ + +N+++    ++G   SA  V + ML  G  P++ T   LI GY   G+
Sbjct: 396  MLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGR 455

Query: 869  VKEADRFFAFDMLQDSNLAIDHVPFQILIKKYFKMRDFDGAYSVYQKWLR 1018
            +   D ++  + ++ + +  D   + +L+     +     A+ +Y + LR
Sbjct: 456  L--IDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLR 503



 Score =  101 bits (252), Expect = 4e-19
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 39/257 (15%)
 Frame = +2

Query: 305 YNTLISALCKAKRIDEACYLYTVMPRMGVAPDRVSYNILIQGLCVVGDVVTAHKLLTCML 484
           +++++  LC   ++D A +L   M   GV P  +++N L+ GLC  G +  A  L+  M 
Sbjct: 124 HSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMR 183

Query: 485 EKSMVPALPTWNVIIDGYGKYGDKQKALHIRDQMMTYGVSPNVFTYNALIHML------- 643
           E    P   ++N +I G     +  KAL++ + M  YG+ PN  T N ++H L       
Sbjct: 184 EMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIG 243

Query: 644 --------------------------------IKSGEIAEAHLLMTEMLLAGPLPDTVTY 727
                                            K+G + +A  +  EM       D+V Y
Sbjct: 244 NNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVY 303

Query: 728 NLLVGAESKFGHLYSAYQVYDDMLKRGYDPDIVTYTELIKGYCLRGKVKEADRFFAFDML 907
           N+++      G++ +AY    DM+KRG +PD+ TY  LI   C  GK  EA        +
Sbjct: 304 NVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHG--TM 361

Query: 908 QDSNLAIDHVPFQILIK 958
           Q+  +A D + ++++I+
Sbjct: 362 QNGGVAPDQISYKVIIQ 378