BLASTX nr result

ID: Atractylodes21_contig00017568 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00017568
         (1162 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281596.1| PREDICTED: E3 ubiquitin-protein ligase At3g0...   115   2e-23
ref|XP_002870814.1| zinc finger family protein [Arabidopsis lyra...   113   1e-22
ref|XP_002882219.1| zinc finger family protein [Arabidopsis lyra...   112   2e-22
ref|NP_001240211.1| uncharacterized protein LOC100777068 [Glycin...   112   2e-22
ref|XP_002336465.1| predicted protein [Populus trichocarpa] gi|2...   112   2e-22

>ref|XP_002281596.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Vitis vinifera]
           gi|298204451|emb|CBI16931.3| unnamed protein product
           [Vitis vinifera]
          Length = 225

 Score =  115 bits (288), Expect = 2e-23
 Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 12/121 (9%)
 Frame = -3

Query: 674 RHGKGSFHSRVEPELVHESND---QSI-------PSEEGSKKCHPDVPPMVALDKVKSKV 525
           R  KGS HS  E E +    D   +S+        S++GSK+  P      ++ K    +
Sbjct: 103 RREKGSSHSHEESEPLRSDTDGDSESLITRDKWNESDDGSKEQRPRSSVKHSMAKTTMGL 162

Query: 524 NTI--SENDEDVCPICLEEYTSENPRIVTKCSHHYHLSCIYEWNERSETCPVCSKLMVFE 351
             I  S  DEDVCP CLEEYT ENP+I+TKCSHH+HL CIYEW ERSETCPVC K+M+F+
Sbjct: 163 GFIYSSSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSETCPVCGKVMMFD 222

Query: 350 E 348
           E
Sbjct: 223 E 223


>ref|XP_002870814.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297316650|gb|EFH47073.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 221

 Score =  113 bits (282), Expect = 1e-22
 Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 15/126 (11%)
 Frame = -3

Query: 680 FMRHGKGSFHSRVEPELVHESNDQSIPS-------------EEGSKKCHPDVPPMVALDK 540
           + R  KGS HS  E E +    + S  S             ++GSK+ +      +A  K
Sbjct: 92  YFRFVKGSGHSGEESEPLRGDTEMSSESLGGGGTKWSKSDSDDGSKEVYSKGSSTIAKSK 151

Query: 539 VKS--KVNTISENDEDVCPICLEEYTSENPRIVTKCSHHYHLSCIYEWNERSETCPVCSK 366
                +++    +DED+CP CL++YT ENP+I+TKCSHH+HLSCIYEW ERSETCPVC K
Sbjct: 152 TMPGIEIHYAESDDEDICPTCLDDYTPENPKIITKCSHHFHLSCIYEWMERSETCPVCGK 211

Query: 365 LMVFEE 348
           +M F+E
Sbjct: 212 VMAFDE 217


>ref|XP_002882219.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328059|gb|EFH58478.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 231

 Score =  112 bits (280), Expect = 2e-22
 Identities = 61/131 (46%), Positives = 74/131 (56%), Gaps = 22/131 (16%)
 Frame = -3

Query: 674 RHGKGSFHSRVEPELVHE----------------SNDQSIPSEEGSKKCHPDVPPMVALD 543
           R  KGS HS  E E +                  +N++S  S++ SK+ +     +  L 
Sbjct: 99  RREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTISDKDSKEEYSSKSSLRILR 158

Query: 542 KVKSKVNTISEN------DEDVCPICLEEYTSENPRIVTKCSHHYHLSCIYEWNERSETC 381
                +   SEN      DEDVCP CLEEYTSENP+IVTKCSHH+HLSCIYEW ERSE C
Sbjct: 159 SKSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENC 218

Query: 380 PVCSKLMVFEE 348
           PVC K+M F E
Sbjct: 219 PVCGKVMEFNE 229


>ref|NP_001240211.1| uncharacterized protein LOC100777068 [Glycine max]
           gi|255647555|gb|ACU24241.1| unknown [Glycine max]
          Length = 229

 Score =  112 bits (280), Expect = 2e-22
 Identities = 59/123 (47%), Positives = 73/123 (59%), Gaps = 14/123 (11%)
 Frame = -3

Query: 674 RHGKGSFHSRVEPELVHESND---QSIPS---------EEGSKKCHPDVPPMVALDKVKS 531
           R  KGS HS  E E +    D   +S+ S         E GSK+ H      +   K  +
Sbjct: 103 RREKGSSHSNEETEPLRSDADLDPESLNSGDKWNESACEAGSKEYHSKSSLRLQSTKYST 162

Query: 530 KVNTI--SENDEDVCPICLEEYTSENPRIVTKCSHHYHLSCIYEWNERSETCPVCSKLMV 357
            V  +  S  +EDVCP CLEEYT ENP+I+TKCSHH+HL CIYEW ERS+ CPVC K+MV
Sbjct: 163 GVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMV 222

Query: 356 FEE 348
           F+E
Sbjct: 223 FDE 225


>ref|XP_002336465.1| predicted protein [Populus trichocarpa] gi|222835076|gb|EEE73525.1|
           predicted protein [Populus trichocarpa]
          Length = 201

 Score =  112 bits (280), Expect = 2e-22
 Identities = 50/88 (56%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
 Frame = -3

Query: 605 IPSEEGSKKCHPDVPPMVALDKVK--SKVNTISENDEDVCPICLEEYTSENPRIVTKCSH 432
           +P E  S + +P  P  V+ +K +   +    S ++EDVCP CLEEY+ ENPRIVT+C+H
Sbjct: 112 VPEEGKSNENNPKAPISVSKEKAEPGDRYLHASIDEEDVCPTCLEEYSVENPRIVTQCNH 171

Query: 431 HYHLSCIYEWNERSETCPVCSKLMVFEE 348
           HYHLSCIYEW ERS+TCPVCSK+M+F+E
Sbjct: 172 HYHLSCIYEWMERSQTCPVCSKVMIFDE 199


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