BLASTX nr result

ID: Atractylodes21_contig00016819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00016819
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chlorop...    67   2e-09
ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus ...    63   2e-08
ref|XP_002305129.1| predicted protein [Populus trichocarpa] gi|1...    62   4e-08
ref|XP_003542738.1| PREDICTED: 30S ribosomal protein S5, chlorop...    61   1e-07
ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chlorop...    58   9e-07

>ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis
           sativus] gi|449479289|ref|XP_004155560.1| PREDICTED: 30S
           ribosomal protein S5, chloroplastic-like [Cucumis
           sativus]
          Length = 307

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 29/41 (70%), Positives = 33/41 (80%)
 Frame = -2

Query: 124 RTQAADIDTTFFDNVNPDEINTFDPPEKPEDFVPPTSFDEG 2
           R +++DIDTTFFDNVNP E   +DPPE PE FVPP SFDEG
Sbjct: 55  RAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEG 95


>ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus communis]
           gi|223549356|gb|EEF50844.1| 30S ribosomal protein S5,
           putative [Ricinus communis]
          Length = 309

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
 Frame = -2

Query: 148 RPTNFPSIRTQ--------AADIDTTFFDNVNPDEINTFDPPEKPEDFVPPTSFDE 5
           R T F S+ +Q        ++DIDTTFFDN+NP++   FDPP  PEDFVPP SFDE
Sbjct: 41  RLTQFLSLSSQPITITTASSSDIDTTFFDNLNPEDDIVFDPPTPPEDFVPPPSFDE 96


>ref|XP_002305129.1| predicted protein [Populus trichocarpa] gi|118487850|gb|ABK95748.1|
           unknown [Populus trichocarpa]
           gi|222848093|gb|EEE85640.1| predicted protein [Populus
           trichocarpa]
          Length = 311

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = -2

Query: 124 RTQAADIDTTFFDNVNPDEINTFDPPEKPEDFVPPTSFDEG 2
           +  ++DIDT+FFDN+NP+E   +DPP  PED++PP SFDEG
Sbjct: 59  KANSSDIDTSFFDNLNPEEEFVYDPPTPPEDYIPPPSFDEG 99


>ref|XP_003542738.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine
           max]
          Length = 316

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 184 PTHQQSNSLSLARPTNFPSIRTQAADIDTTFFDNVNPDEINTFDPPEKPEDFVPPTSFDE 5
           P+HQ S  L L   +        + DIDT+FFDN+NP +  TF+PPE PE FV P SFD+
Sbjct: 50  PSHQPSKPLFLTLKSK------PSDDIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDD 103

Query: 4   G 2
           G
Sbjct: 104 G 104


>ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine
           max]
          Length = 300

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = -2

Query: 109 DIDTTFFDNVNPDEINTFDPPEKPEDFVPPTSFDEG 2
           DIDT+FFDN+NP +  TF+PPE PE FV P SFD+G
Sbjct: 53  DIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDG 88


Top