BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00016583
         (3481 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1508   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1508   0.0  
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1497   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1495   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1482   0.0  

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1508 bits (3904), Expect = 0.0
 Identities = 753/1105 (68%), Positives = 884/1105 (80%), Gaps = 10/1105 (0%)
 Frame = +1

Query: 73   MGKTVNVYGFPKLVSADIIKTHLERYTGSGTIVALEVRQS-NGGSRAYAKVQFTTRERVD 249
            M KT+ VYGFP +VSAD IK  LE+YTG GTI ALE++Q  +G S  +AKVQFT+ E  +
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 250  YILDLASHRRLWYGTSYLKAWEMDVDIVQKPRQFALDMEGVTLRFGCQVSKESLSVLCEM 429
            +I+ L   +++WYG +YLKA EMD+DI+ KPR F   M+ +TL FGCQ+S E   VL + 
Sbjct: 61   FIITLCK-KKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119

Query: 430  RNASVKFGFGLRRLYFLISYPTTIYKLQLAYENIWQVQLHRSRGRAASFLVIQLYGAPRI 609
             N SVKFG GLR+ YF +S+ +  YKL+L+YENIWQ+QL   RG+   FL+IQL GAP+I
Sbjct: 120  INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179

Query: 610  YQKVEDSILNYYREIPDDQWVRATDFTPSFSIGQSSHLCLELSHDVELANLGDYFPYYEE 789
            Y+K    +  Y++E PDDQWVR  DFTPS  IGQS  LCLEL +  +L N  + F YY+E
Sbjct: 180  YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 239

Query: 790  SNRPFVLVTGRSFSQNLDLVPIVGPARGFYLPYKIVFKICALVQHGCIPGPVLDANFYEL 969
            ++  F+L +G S+S NL LVPI+GP +G  LP++I+FKI  LVQ+GC+ GP LD +F+ L
Sbjct: 240  NDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRL 299

Query: 970  LDPQRRDMASIEYVLETLYYLKYCCYDPVRWITEEYR---KNNRLRSPAISLDAGLVYVR 1140
            +DP+R  ++ IE+ LE LY+LK CCY+PVRW++E+YR   K     SPAISLD GLVYVR
Sbjct: 300  VDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVR 359

Query: 1141 RVQVTPSKVYFCGPEVNVSNRVLRHYAAYIDNFLRVSFLDEELEKLYSTDLSPRATSQNG 1320
            RVQ+TP KVYFCGPEVNVSNRVLR+Y   IDNFLRVSFLDE LEK++ST +SPR + +  
Sbjct: 360  RVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEG- 418

Query: 1321 ESRTGIYKRILSILRDGIVIGNKKFEFLAFSSSQLRDNSAWMFASSDRLTAADIREWMGD 1500
              RTG+Y+RILSIL++GIVIG+KKF+FLAFSSSQLRDNSAWMFAS   LTAA+IR WMGD
Sbjct: 419  -RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGD 477

Query: 1501 FRSIRNVAKYAARLGQSFGSSKESLSVERHEVKNISDIEVVRGGTRYVFSDGIGKISVDF 1680
            F  IRNVAKYAARLGQSF SSKE+L V + E++NI DIE+ +G T YVFSDGIGKIS   
Sbjct: 478  FSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQL 537

Query: 1681 ARRVSVKCGY-DFIPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMCKFESDNTKLDILAI 1857
            A RV++KCG     PSAFQIRYGGYKGVVAVDPTSS KLSLRKSM K+ESDNT LD+LA 
Sbjct: 538  AHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAW 597

Query: 1858 SKYQPCYMNRQLITLLSTLGVRDHVFEKKQKEVVDLLDAILREPMKAQEALDLMSPGENT 2037
            SKYQP ++NRQLITLLSTLGV+DHVFEKKQ+  VD LD IL++P+ AQEAL+LMSPGENT
Sbjct: 598  SKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENT 657

Query: 2038 NILKEMLTCGYRPDAEPFLSMMLQVFRATKLLELRTKTRIFVPKGRAMMGCLDETKILEY 2217
            N+LKEML CGY+PDAEPFLSMMLQ FRA KLLELRTKTRIFVP GR+MMGCLDET+ LEY
Sbjct: 658  NVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 717

Query: 2218 GEVFVQFSGAXXXXXXXXXXXXXXXXXX----IVTGKVVVAKNPCLHPGDVRVLRAIDVQ 2385
            GEVFVQ SG                       I+ GK+VVAKNPCLHPGDVRVL A++V 
Sbjct: 718  GEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVP 777

Query: 2386 ALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDYTPAPSMLQ 2565
             LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD DLIPP+QI PMDYTPAP+ + 
Sbjct: 778  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVL 837

Query: 2566 DHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELQKAMAEPCVELAKLFSIAVDFPK 2745
            DHDV IEEVEEYFTNYIVNDSLGIIANAHTVFAD+E  KA  +PC ELAKLFSIAVDFPK
Sbjct: 838  DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 897

Query: 2746 TGVPAEIPANLRVKDYPDFMEKPDKTTYKSENVIGKLFREVKDISLQNSPVSPFTRDVAR 2925
            TGVPAEIP NLRVK+YPDFMEK DK TY+S++VIGKLFREVKDI+  N  +  FTRDVAR
Sbjct: 898  TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 957

Query: 2926 RTYDADMEVDGFEDYVDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMKMSRSFDRR 3105
            ++YD DMEV GFEDYV +AF +K+EYDYKLGNLMDYYGIKTE+E+LSGSIM+MS+SFDRR
Sbjct: 958  QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 1017

Query: 3106 NDAEAVGLAVKSLRKEARSWFRRGSGESD-VGDDVYAKASAWYHVTYHPRYYGLYNVEMK 3282
             DAEA+GLAVKSLRKEAR+WF +   E+D   DDVYAKASAWYHVTYHP Y+G YN  M 
Sbjct: 1018 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 1077

Query: 3283 RHHFLSFPWCVHDKLIEIKRRSRAG 3357
            R HFLSFPWCV+DKLI  KR+  +G
Sbjct: 1078 RDHFLSFPWCVYDKLIHTKRKKMSG 1102


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1508 bits (3903), Expect = 0.0
 Identities = 752/1100 (68%), Positives = 896/1100 (81%), Gaps = 10/1100 (0%)
 Frame = +1

Query: 73   MGKTVNVYGFPKLVSADIIKTHLERYTGSGTIVALEVRQSNGGSRAYAKVQFTTRERVDY 252
            MGKT+ V+GFP L+SA+ +K  LE +TG+GT+ ALEV+QS GG RA+AKVQF   +  ++
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 253  ILDLASHRRLWYGTSYLKAWEMDVDIVQKPRQFALDMEGVTLRFGCQVSKESLSVLCEMR 432
            I+DLAS + L+YG SYLKAWEM  DIVQ PR +   M+GVTL FGCQ+S +  +VL   +
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTDIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLGS-K 117

Query: 433  NASVKFGFGLRRLYFLISYPTTIYKLQLAYENIWQVQLHRSRGRAASFLVIQLYGAPRIY 612
            + S+KFG GL+++YF +S+ +  YKLQL+YENIWQV LHR  G+ A FL++QL+GAPRIY
Sbjct: 118  DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIY 177

Query: 613  QKVEDSILNYYREIPDDQWVRATDFTPSFSIGQSSHLCLELSHDVELANLGDYFPYYEES 792
            +++EDS  ++++E PDDQWVR TDFTPS+ IG SS LCLE  + V+L N  + F YY+ES
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSESFFYYKES 236

Query: 793  NRPFVLVTGR--SFSQNLDLVPIVGPARGFYLPYKIVFKICALVQHGCIPGPVLDANFYE 966
               F+L TG   SFSQ L LVPIV    G  LPYKI+FKI +L+QHGC PG  L+ NF++
Sbjct: 237  MNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 296

Query: 967  LLDPQRRDMASIEYVLETLYYLKYCCYDPVRWITE---EYRKNNRL-RSPAISLDAGLVY 1134
            L+DP+RR++A IE+ LE LYYLK CCYDPVRW+TE   EY K  +L +SP I+LD GLVY
Sbjct: 297  LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVY 356

Query: 1135 VRRVQVTPSKVYFCGPEVNVSNRVLRHYAAYIDNFLRVSFLDEELEKLYSTDLSPRATSQ 1314
            VRRV VTP KVYFCGPEVNVSNRVLR+Y+  I+NFLRVSF+DEE EK++STDL PRA++ 
Sbjct: 357  VRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416

Query: 1315 NGESRTGIYKRILSILRDGIVIGNKKFEFLAFSSSQLRDNSAWMFASSDRLTAADIREWM 1494
            NG +RT IY+RILS LR+G +IG+K+FEFLAFSSSQLRDNS WMFAS   LTA DIR WM
Sbjct: 417  NG-TRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475

Query: 1495 GDFRSIRNVAKYAARLGQSFGSSKESLSVERHEVKNISDIEVVRGGTRYVFSDGIGKISV 1674
            GDFR IRNVAKYAARLGQSFGSS+E+LSV RHEV+ I D+     GT Y+FSDGIGKIS 
Sbjct: 476  GDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISA 535

Query: 1675 DFARRVSVKCGYDFIPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMCKFESDNTKLDILA 1854
            DFA RV++KCG  + PS+FQIRYGGYKGVVAVDP SSMKLSLRKSM K+ES+N KLD+L 
Sbjct: 536  DFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLG 595

Query: 1855 ISKYQPCYMNRQLITLLSTLGVRDHVFEKKQKEVVDLLDAILREPMKAQEALDLMSPGEN 2034
             SKYQPCY+NRQL+TLLSTLGV D V E+KQ E VD LDAIL + +KAQEAL+LMSPGEN
Sbjct: 596  WSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGEN 655

Query: 2035 TNILKEMLTCGYRPDAEPFLSMMLQVFRATKLLELRTKTRIFVPKGRAMMGCLDETKILE 2214
            TNILKEML CGY PDAEPFLSMMLQ FRA+KLL+LRT+TRIF+P GR MMGCLDE++ LE
Sbjct: 656  TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLE 715

Query: 2215 YGEVFVQFSGAXXXXXXXXXXXXXXXXXX----IVTGKVVVAKNPCLHPGDVRVLRAIDV 2382
            YG+VFVQFSGA                      I+ G VVVAKNPCLHPGD+RVLRA+DV
Sbjct: 716  YGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDV 775

Query: 2383 QALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDYTPAPSML 2562
             ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPRQ++ MDYTPAP+  
Sbjct: 776  PALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQ 835

Query: 2563 QDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELQKAMAEPCVELAKLFSIAVDFP 2742
             DHDVTIEEVEEYFTNYI+NDSLGIIANAH VFADRE   AM++PC +LA+LFSIAVDFP
Sbjct: 836  LDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFP 895

Query: 2743 KTGVPAEIPANLRVKDYPDFMEKPDKTTYKSENVIGKLFREVKDISLQNSPVSPFTRDVA 2922
            KTGVPAEIP+ LR K+YPDFMEKPDK TY SE VIGKLF++VK+ + Q S ++ FTRDVA
Sbjct: 896  KTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVA 955

Query: 2923 RRTYDADMEVDGFEDYVDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMKMSRSFDR 3102
            R++YD+DM VDGFEDY+DEAF +K+EYD KLGNLMDYYGIKTEAE+LSG IMK S++FDR
Sbjct: 956  RKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1015

Query: 3103 RNDAEAVGLAVKSLRKEARSWFRRGSGESDVGDDVYAKASAWYHVTYHPRYYGLYNVEMK 3282
            R DAEA+G+AV+ LRKEAR+WF+R    SD+ DD+ AKASAWYHVTYH  Y+GLYN  +K
Sbjct: 1016 RKDAEAIGVAVRCLRKEARAWFKR---RSDI-DDMLAKASAWYHVTYHHTYWGLYNEGLK 1071

Query: 3283 RHHFLSFPWCVHDKLIEIKR 3342
            R HF+SFPWCV+D+LI+IK+
Sbjct: 1072 RDHFISFPWCVYDQLIQIKK 1091


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1497 bits (3876), Expect = 0.0
 Identities = 743/1116 (66%), Positives = 883/1116 (79%), Gaps = 18/1116 (1%)
 Frame = +1

Query: 73   MGKTVNVYGFPKLVSADIIKTHLERYTGSGTIVALEVRQ-SNGGSRAYAKVQFTTRERVD 249
            M KTV V GFP   +A  ++  LE +TG GT+ AL++R+   GG+R YA VQFTT    +
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 250  YILDLASHRRLWYGTSYLKAWEMDVDIVQKPRQFALDMEGVTLRFGCQVSKESLSVLCEM 429
             I+ LA+ R LWYG SYL A  MD DI+ +PR F   ME VTL FG Q SKE  S +   
Sbjct: 61   QIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119

Query: 430  RNASVKFGFGLRRLYFLISYPTTIYKLQLAYENIWQVQLHRSRGRAASFLVIQLYGAPRI 609
             N SV FG G+R+L+F +S+    YKL L +ENIWQ++LHR RG+   +L+IQLYGAPRI
Sbjct: 120  NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179

Query: 610  YQK--------VEDSILNYYREIPDDQWVRATDFTPSFSIGQSSHLCLELSHDVELANLG 765
            Y++         ED +LNY+R++PD+QWVR TDFTPS  IG SS LCLEL + ++L N  
Sbjct: 180  YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239

Query: 766  DYFPYYEESNRPFVLVTGRSFSQNLDLVPIVGPARGFYLPYKIVFKICALVQHGCIPGPV 945
            + F YY+E+   FVL +G +FS+N DLVPIVGP+ G  LPY I+F++  LVQ+GC+ G +
Sbjct: 240  ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299

Query: 946  LDANFYELLDPQRRDMASIEYVLETLYYLKYCCYDPVRWITEEYRK----NNRLRSPAIS 1113
            LD  FY L+DP R  +  IEY LE LY+LK CCY+P +W  E+Y+K     N  RSP +S
Sbjct: 300  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 1114 LDAGLVYVRRVQVTPSKVYFCGPEVNVSNRVLRHYAAYIDNFLRVSFLDEELEKLYSTDL 1293
            LDAGLVYV +VQ+TP KV+FCGPEVNVSNRVLR Y   IDNFLRVSF+DEELEK++STD+
Sbjct: 360  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419

Query: 1294 SPRATSQNGESRTGIYKRILSILRDGIVIGNKKFEFLAFSSSQLRDNSAWMFASSDRLTA 1473
            SPR +S+N   RT IY RILS L++GIVIG+KKFEFLAFSSSQLR+NS WMFAS   LTA
Sbjct: 420  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479

Query: 1474 ADIREWMGDFRSIRNVAKYAARLGQSFGSSKESLSVERHEVKNISDIEVVRGGTRYVFSD 1653
            ADIR WMG F  IRNVA+YAARLGQSFGSS E+LSV  HE++ I DIEV RGGTRY+FSD
Sbjct: 480  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539

Query: 1654 GIGKISVDFARRVSVKCGYD-FIPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMCKFESD 1830
            GIGKIS +FAR+V++KCG   F PSAFQIRY GYKGVVAVDPTSS KLSLR+SM K+ES+
Sbjct: 540  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599

Query: 1831 NTKLDILAISKYQPCYMNRQLITLLSTLGVRDHVFEKKQKEVVDLLDAILREPMKAQEAL 2010
            NTKLD+LA SKYQPC++NRQLITLLSTLGV DH FE+KQ+E VD LDA+L +P++AQEAL
Sbjct: 600  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659

Query: 2011 DLMSPGENTNILKEMLTCGYRPDAEPFLSMMLQVFRATKLLELRTKTRIFVPKGRAMMGC 2190
            +LMSPGENTNILKEML CGY+PDAEPFLSMMLQ FRA+KLLELRTKTRIF+P GR+MMGC
Sbjct: 660  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719

Query: 2191 LDETKILEYGEVFVQFSGAXXXXXXXXXXXXXXXXXX---IVTGKVVVAKNPCLHPGDVR 2361
            LDET+ LE+G+VFV+FSG+                     ++ G VVVAKNPCLHPGD+R
Sbjct: 720  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 779

Query: 2362 VLRAIDVQALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDY 2541
            +L+A+DV ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP +QI PMDY
Sbjct: 780  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839

Query: 2542 TPAPSMLQDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELQKAMAEPCVELAKLF 2721
            TP P +  DHDVTIEEVEEYFTNYIVNDSLG+IANAHT  AD+E  KAM+EPCVELA+ F
Sbjct: 840  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 899

Query: 2722 SIAVDFPKTGVPAEIPANLRVKDYPDFMEKPDKTTYKSENVIGKLFREVKDISLQNSPVS 2901
            SIAVDFPKTGVPAEIP+NLR ++YPDFMEKPDK +Y+S NVIGKLFREVKDI+ + S + 
Sbjct: 900  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 959

Query: 2902 PFTRDVARRTYDADMEVDGFEDYVDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMK 3081
             FT DVAR+ YD DMEVDGFEDY+D+AF +K+ YDYKLGNLM+YYGIKTEAELLSGS MK
Sbjct: 960  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019

Query: 3082 MSRSFDRRNDAEAVGLAVKSLRKEARSWF-RRGSGESDVGDDVYAKASAWYHVTYHPRYY 3258
            MS+SF ++ DAEA+G+AV+SL+KEARSWF  +GSG     DDV AKASAWYHVTYH  Y+
Sbjct: 1020 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1079

Query: 3259 GLYNVEMKRHHFLSFPWCVHDKLIEIKRRSRAGIRR 3366
            G YN  M R HFLSFPWCV+DKLI+IKRR+ A IRR
Sbjct: 1080 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRR 1115


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1495 bits (3871), Expect = 0.0
 Identities = 750/1101 (68%), Positives = 888/1101 (80%), Gaps = 11/1101 (0%)
 Frame = +1

Query: 73   MGKTVNVYGFPKLVSADIIKTHLERYTGSGTIVALEVRQSNGGSRAYAKVQFTTRERVDY 252
            MGKT+ V+GFP L+SA+ +KT LE +TG+GT+ ALEV+QS GG RA+AKVQF   +  + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 253  ILDLASHRRLWYGTSYLKAWEMDVDIVQKPRQFALDMEGVTLRFGCQVSKESLSVLCEMR 432
            I+DLAS + L+YG SYLKAWEM   IVQ PR +   M+GVTL FGCQ+S +  +VL   +
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTYIVQ-PRTYVQHMDGVTLNFGCQISDKKFAVLGS-K 117

Query: 433  NASVKFGFGLRRLYFLISYPTTIYKLQLAYENIWQVQLHRSRGRAASFLVIQLYGAPRIY 612
              S+KFG GL+++YF +SY +T YKLQL+YENIWQV LHR  G+ A FL++QL GAPRIY
Sbjct: 118  VVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIY 177

Query: 613  QKVEDSILNYYREIPDDQWVRATDFTPSFSIGQSSHLCLELSHDVELANLGDYFPYYEES 792
            +++EDS  ++++E PDDQWVR TDFTPS+ IG SS LCLE  + V L N  + F YY+ES
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSESFFYYKES 236

Query: 793  NRPFVLVTGRSFS---QNLDLVPIVGPARGFYLPYKIVFKICALVQHGCIPGPVLDANFY 963
                +L TG +FS   + L LVPIV    G  LPYKI+FKI +L+QHGC PG  L+ NF+
Sbjct: 237  ANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFF 296

Query: 964  ELLDPQRRDMASIEYVLETLYYLKYCCYDPVRWITE---EYRKNNRL-RSPAISLDAGLV 1131
            +L+DP+RR++A IE+ LE LYYLK CCYDPVRW+TE   EY K  +L +SP+I+LD GLV
Sbjct: 297  QLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLV 356

Query: 1132 YVRRVQVTPSKVYFCGPEVNVSNRVLRHYAAYIDNFLRVSFLDEELEKLYSTDLSPRATS 1311
            YVRRV VTP KVYFCGPEVNVSNRVLR+Y+  IDNFLRVSF+DEE EK++STDL PRA++
Sbjct: 357  YVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRAST 416

Query: 1312 QNGESRTGIYKRILSILRDGIVIGNKKFEFLAFSSSQLRDNSAWMFASSDRLTAADIREW 1491
             NG  RT IY RILS LR+G VIG+KKFEFLAFSSSQLRDNS WMFAS   LTA DIR W
Sbjct: 417  GNGV-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTW 475

Query: 1492 MGDFRSIRNVAKYAARLGQSFGSSKESLSVERHEVKNISDIEVVRGGTRYVFSDGIGKIS 1671
            MG F+ IRNVAKYAARLGQSFGSS+E+LSV RHEV+ I D+     GT Y+FSDGIGKIS
Sbjct: 476  MGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKIS 535

Query: 1672 VDFARRVSVKCGYDFIPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMCKFESDNTKLDIL 1851
             DFARRV+VKCG  + PS FQIRYGGYKGVVAVDP SSMKLSLR SM K+ES+N KLD+L
Sbjct: 536  ADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVL 595

Query: 1852 AISKYQPCYMNRQLITLLSTLGVRDHVFEKKQKEVVDLLDAILREPMKAQEALDLMSPGE 2031
              SKYQPCY+NRQL+TLLSTLGV+D VFE+KQ E VD LDAIL + +KAQEAL+LMSPGE
Sbjct: 596  GWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGE 655

Query: 2032 NTNILKEMLTCGYRPDAEPFLSMMLQVFRATKLLELRTKTRIFVPKGRAMMGCLDETKIL 2211
            NTNILKEML CGY PDAEPFLSMMLQ FRA+KLL+LRT++RIF+P GR MMGCLDE++ L
Sbjct: 656  NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTL 715

Query: 2212 EYGEVFVQFSGAXXXXXXXXXXXXXXXXXX----IVTGKVVVAKNPCLHPGDVRVLRAID 2379
            EYG+VFVQF+G                       I+ G VVVAKNPCLHPGD+RVLRA+D
Sbjct: 716  EYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVD 775

Query: 2380 VQALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDYTPAPSM 2559
            V ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPDL+PPRQ +PMDYTPAPS 
Sbjct: 776  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPST 835

Query: 2560 LQDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELQKAMAEPCVELAKLFSIAVDF 2739
              DHDVTIEEVEEYFTNYIVNDSLGIIANAH VFADRE   AM++PC +LA+LFSIAVDF
Sbjct: 836  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 895

Query: 2740 PKTGVPAEIPANLRVKDYPDFMEKPDKTTYKSENVIGKLFREVKDISLQNSPVSPFTRDV 2919
            PKTGVPAEIP+ LR K+YPDFMEKPDK TY SE VIGKLF++VKD + Q S ++ FT DV
Sbjct: 896  PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDV 955

Query: 2920 ARRTYDADMEVDGFEDYVDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMKMSRSFD 3099
            AR++YD DM V+GFEDY+DEAF +K+EYD KLGNLMDYYGIKTEAE+LSG IMK S++FD
Sbjct: 956  ARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1015

Query: 3100 RRNDAEAVGLAVKSLRKEARSWFRRGSGESDVGDDVYAKASAWYHVTYHPRYYGLYNVEM 3279
            RR DA+A+G+AV+SLRKEAR+WF+R    SD+ DD+ AKASAWYHVTYH  Y+G YN  +
Sbjct: 1016 RRKDADAIGVAVRSLRKEARTWFKR---RSDI-DDMLAKASAWYHVTYHHTYWGFYNEGL 1071

Query: 3280 KRHHFLSFPWCVHDKLIEIKR 3342
            KR HF+SFPWC++D+LI+IK+
Sbjct: 1072 KRDHFISFPWCIYDQLIQIKK 1092


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1482 bits (3836), Expect = 0.0
 Identities = 741/1100 (67%), Positives = 886/1100 (80%), Gaps = 10/1100 (0%)
 Frame = +1

Query: 73   MGKTVNVYGFPKLVSADIIKTHLERYTGSGTIVALEVRQSNGGSRAYAKVQFTTRERVDY 252
            MGKT+ V+GFP L+SA+++K+ LE+YTG GT+ ALEV+QS GGSRA+AKVQF      D 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 253  ILDLASHRRLWYGTSYLKAWEMDVDIVQKPRQFALDMEGVTLRFGCQVSKESLSVLCEMR 432
            I+ LA++R L++G+SYLKAWEM  DIVQ  R +   M+G+TL FGCQ+S +  +VL    
Sbjct: 61   IITLANNR-LYFGSSYLKAWEMKTDIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGSTE 118

Query: 433  NASVKFGFGLRRLYFLISYPTTIYKLQLAYENIWQVQLHRSRGRAASFLVIQLYGAPRIY 612
              S++FG GL++ +F +S  +  YKLQL+YENIWQV LHR  G+ A FL+IQL+GAPRIY
Sbjct: 119  -VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 613  QKVEDSILNYYREIPDDQWVRATDFTPSFSIGQSSHLCLELSHDVELANLGDYFPYYEES 792
            +++E+S  ++++E PDDQWVR TDF PS+ IG SS LCL+    V L N  + F +Y E 
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEESFFHYAER 236

Query: 793  NRPFVLVTGRSF--SQNLDLVPIVGPARGFYLPYKIVFKICALVQHGCIPGPVLDANFYE 966
                 L TG +F  SQ   LVP V P  G  +PYKI+FKI +LVQHGCIPGP L+  F+ 
Sbjct: 237  ENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFR 296

Query: 967  LLDPQRRDMASIEYVLETLYYLKYCCYDPVRWITEEY----RKNNRLRSPAISLDAGLVY 1134
            L+DP+RR++A IE+ LE LYY+K CCYDPVRW+TE+Y    +     +SP+I+LD GLVY
Sbjct: 297  LVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356

Query: 1135 VRRVQVTPSKVYFCGPEVNVSNRVLRHYAAYIDNFLRVSFLDEELEKLYSTDLSPRATSQ 1314
            VRRV VTP KVYFCGPEVNVSNRVLR+Y+  IDNFLRVSF+DEE EKLYSTDL P+A++ 
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416

Query: 1315 NGESRTGIYKRILSILRDGIVIGNKKFEFLAFSSSQLRDNSAWMFASSDRLTAADIREWM 1494
            +G  RT IY+RILS LR G VIG+KKFEFLAFSSSQLRDNS WMFAS   LTA DIR WM
Sbjct: 417  SGV-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWM 475

Query: 1495 GDFRSIRNVAKYAARLGQSFGSSKESLSVERHEVKNISDIEVVRGGTRYVFSDGIGKISV 1674
            GDF  I+NVAKYAARLGQSFGSS+E+LSV RHE++ I D++V   GT YVFSDGIGKIS 
Sbjct: 476  GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISG 533

Query: 1675 DFARRVSVKCGYDFIPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMCKFESDNTKLDILA 1854
            DFA RV+ KCG  + PSAFQIRYGGYKGVV VDP SSMKLSLRKSM K+ESDN KLD+L 
Sbjct: 534  DFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLG 593

Query: 1855 ISKYQPCYMNRQLITLLSTLGVRDHVFEKKQKEVVDLLDAILREPMKAQEALDLMSPGEN 2034
             SKYQPCY+NRQLITLLSTLGV+D V E+KQKE VD LDAIL + +KAQEAL+LMSPGEN
Sbjct: 594  WSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGEN 653

Query: 2035 TNILKEMLTCGYRPDAEPFLSMMLQVFRATKLLELRTKTRIFVPKGRAMMGCLDETKILE 2214
            TNILK ML CGY+PDAEPFLSMMLQ FRA+KLL+LRT++RIF+P GR MMGCLDE++ LE
Sbjct: 654  TNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLE 713

Query: 2215 YGEVFVQFSGAXXXXXXXXXXXXXXXXXX----IVTGKVVVAKNPCLHPGDVRVLRAIDV 2382
            YG+VFVQF+GA                      I+ G VVVAKNPCLHPGD+RVL+A++V
Sbjct: 714  YGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNV 773

Query: 2383 QALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDYTPAPSML 2562
            +ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD D+IPPRQ++PM+Y PAPS+ 
Sbjct: 774  RALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQ 833

Query: 2563 QDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADRELQKAMAEPCVELAKLFSIAVDFP 2742
             DHDVTIEEVEEYFTNYIVNDSLGIIANAH VFADRE   AM++PC +LA+LFSIAVDFP
Sbjct: 834  LDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFP 893

Query: 2743 KTGVPAEIPANLRVKDYPDFMEKPDKTTYKSENVIGKLFREVKDISLQNSPVSPFTRDVA 2922
            KTGVPAEIP+ LR K+YPDFM+KPDKT+Y SE VIGKLFR+VKD + Q S ++ FTRDVA
Sbjct: 894  KTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVA 953

Query: 2923 RRTYDADMEVDGFEDYVDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMKMSRSFDR 3102
            RR+YDADMEVDGFEDY+DEAFD+KTEYD KLGNLMDYYGIKTEAE+LSG IMK S++FDR
Sbjct: 954  RRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1013

Query: 3103 RNDAEAVGLAVKSLRKEARSWFRRGSGESDVGDDVYAKASAWYHVTYHPRYYGLYNVEMK 3282
            R DAEA+ +AV++LRKEAR+WF+R    +D+ DD+  KASAWYHVTYHP Y+G YN  +K
Sbjct: 1014 RKDAEAISVAVRALRKEARAWFKR---RNDI-DDMLPKASAWYHVTYHPTYWGCYNQGLK 1069

Query: 3283 RHHFLSFPWCVHDKLIEIKR 3342
            R HF+SFPWCV+D+LI+IK+
Sbjct: 1070 RAHFISFPWCVYDQLIQIKK 1089