BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00016558
         (1816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   627   0.0  
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   581   e-174
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   585   e-173
ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat...   562   e-170
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...   571   e-169

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  627 bits (1616), Expect(2) = 0.0
 Identities = 298/494 (60%), Positives = 387/494 (78%)
 Frame = +1

Query: 112  PIDHRYISQILSRKDWYLLLNNELKSNKISLNPRIIVSVLQNQENPLHNLIFYLWVSNIN 291
            PIDH Y S+ILSR DW+LLLN+E K+ +I+LN   + SVLQNQENPL+ L FY+WVSN++
Sbjct: 81   PIDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVASVLQNQENPLYPLKFYIWVSNMD 140

Query: 292  PLFAKNQSVRGVLANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRLGLAKY 471
            PLFAK+QSV+GVLAN LYRKGPV+LS EL++ +++SG  I E+ LCILI SWGRLGLAKY
Sbjct: 141  PLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKY 200

Query: 472  CAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIH 651
            C ++F QISFLG++PSTRLYNAVIDALVKSN+LDLAYLKFQQM AD C PDRFTYN LIH
Sbjct: 201  CDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIH 260

Query: 652  GVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRP 831
            GVC+ GVVDEA RL+KQM+ +GY PNVFTYTILIDG+ NAK+++EAF++LE MK   V P
Sbjct: 261  GVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSP 320

Query: 832  NDATFRSLVNGLFRNTHPLEALKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFL 1011
            ++AT RS ++G+FR   P +A +L  +F++ E VL    C+++L CLSS ++ +E    L
Sbjct: 321  SEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALL 380

Query: 1012 KKIIERGYIPDTMTFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKN 1191
            KK  + G+ PD+ TFNI + CL+KG DL   C+I+D  + +GM  GF+TYL L+++LY  
Sbjct: 381  KKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMA 440

Query: 1192 GRLLEGNRYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTF 1371
            G++ EGN Y NQ++K+G L NV SYNM+ID FCKT M+D+A  TF +M    I PNLVTF
Sbjct: 441  GKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTF 500

Query: 1372 NTLLSWHCKAGDMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVD 1551
            NTL+  +CK G++ ++R+LL MLL+HG KPD +TF+S+I GLCR  QI+DA  C +EMV 
Sbjct: 501  NTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVM 560

Query: 1552 WGVHPNAITYNVLI 1593
            WG+ PNA+TYN+LI
Sbjct: 561  WGLSPNAVTYNILI 574



 Score = 73.2 bits (178), Expect(2) = 0.0
 Identities = 33/54 (61%), Positives = 44/54 (81%)
 Frame = +2

Query: 1655 SLCIIGDISKAKTLLKKMQVNGVKADIFSFNALIQSFCRMKEVEKAKRVLLTML 1816
            SLCIIGD+ ++  LL+KMQ +G+  D+FSFNALIQSFCRM +VE AK++  +ML
Sbjct: 576  SLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSML 629



 Score =  139 bits (350), Expect = 2e-30
 Identities = 94/423 (22%), Positives = 187/423 (44%), Gaps = 35/423 (8%)
 Frame = +1

Query: 430  ILISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKAD 609
            ILI    R G+     ++  Q+  LG +P+   Y  +ID    +  +D A+   + MKA 
Sbjct: 257  ILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKAR 316

Query: 610  RCNPDRFTYNFLIHGVCKV-----------------------------------GVVDEA 684
            + +P   T    IHGV +                                     +  EA
Sbjct: 317  KVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREA 376

Query: 685  SRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDATFRSLVNG 864
              L+K+  ++G+ P+  T+ I ++       + E   +L+R  E  ++   +T+ +L+  
Sbjct: 377  GALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKA 436

Query: 865  LFRNTHPLEALKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFLKKIIERGYIPD 1044
            L+      E     +  V +  +  V     V+ C    S+  +     K++  +G  P+
Sbjct: 437  LYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPN 496

Query: 1045 TMTFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKNGRLLEGNRYLN 1224
             +TFN  I    KG ++  + D++  L+  G      T+  +++ L +  ++ +     +
Sbjct: 497  LVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFS 556

Query: 1225 QILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTFNTLLSWHCKAG 1404
            +++  G   N ++YN++I S C  G + R+MK    M    I+P++ +FN L+   C+ G
Sbjct: 557  EMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMG 616

Query: 1405 DMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVDWGVHPNAITYN 1584
             + +A++L   +L  GL PD YT+ + I   C++ + ++A +    M   G  P++ T N
Sbjct: 617  KVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCN 676

Query: 1585 VLI 1593
            +++
Sbjct: 677  IIL 679



 Score =  101 bits (252), Expect = 6e-19
 Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 24/330 (7%)
 Frame = +1

Query: 403  CCITEDSLC----ILISSWGRLG---------LAKYC----------AQVFDQISFLGLT 513
            CC++  ++      L+  +G++G         +A  C            + D+    G+ 
Sbjct: 365  CCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMK 424

Query: 514  PSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCKVGVVDEASRL 693
                 Y A+I AL  +  +      F QM  D    +  +YN +I   CK  ++D+A+  
Sbjct: 425  FGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNT 484

Query: 694  MKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDATFRSLVNGLFR 873
             K+MQ  G  PN+ T+  LIDGYC    I ++  LL  + E   +P+  TF S+++GL R
Sbjct: 485  FKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCR 544

Query: 874  NTHPLEALKLLSDFVDNEDVLPVAVCESVL-HCLSSNSLPKETAVFLKKIIERGYIPDTM 1050
                 +AL   S+ V    + P AV  ++L H L        +   L+K+   G  PD  
Sbjct: 545  AKQIEDALGCFSEMV-MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVF 603

Query: 1051 TFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKNGRLLEGNRYLNQI 1230
            +FN  I    +   +     +   ++  G+I    TY+  ++   ++GR  E       +
Sbjct: 604  SFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSM 663

Query: 1231 LKNGHLTNVISYNMIIDSFCKTGMIDRAMK 1320
              NG + +  + N+I+D+  K    + A K
Sbjct: 664  EANGCMPDSFTCNIILDALVKQDQFEAAQK 693


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  581 bits (1498), Expect(2) = e-174
 Identities = 282/494 (57%), Positives = 369/494 (74%)
 Frame = +1

Query: 112  PIDHRYISQILSRKDWYLLLNNELKSNKISLNPRIIVSVLQNQENPLHNLIFYLWVSNIN 291
            P++ RYISQ++ RKDW+L+LN E  +++I LN R ++SVLQNQ+NPLH+L FYLWVSN +
Sbjct: 44   PLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVSNFD 103

Query: 292  PLFAKNQSVRGVLANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRLGLAKY 471
            P++AK+QS++ VL N L+RKGP+LLS EL++ +R SG  I+++ +C+LI SWGRLGLAKY
Sbjct: 104  PVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKY 163

Query: 472  CAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIH 651
            C  VF QISFLG+ PSTRLYNAVIDALVKSN+LDLAYLKFQQM++D C PDRFTYN LIH
Sbjct: 164  CNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIH 223

Query: 652  GVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRP 831
            GVCK GVVDEA RL+KQM++ G  PNVFTYTILIDG+  A R++EA K LE M+   + P
Sbjct: 224  GVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNP 283

Query: 832  NDATFRSLVNGLFRNTHPLEALKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFL 1011
            N+AT R+ V+G+FR   P +A ++L  F++ +  L     ++VL+CLS+NS+ KET  FL
Sbjct: 284  NEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFL 343

Query: 1012 KKIIERGYIPDTMTFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKN 1191
            +KI ERGYIPD+ TFN  ++CLLKG DL+ TC I DG + RG+  GFN YL+LV++L   
Sbjct: 344  RKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNA 403

Query: 1192 GRLLEGNRYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTF 1371
             R  EG+RYL Q+  +G L++V SYN +ID  CK   I+ A     +M    ISPNLVTF
Sbjct: 404  QRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTF 463

Query: 1372 NTLLSWHCKAGDMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVD 1551
            NT LS +   GD+ +   +L+ LL HG KPD  TF+ +I+ LCR  +I DAFDC  EM++
Sbjct: 464  NTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLE 523

Query: 1552 WGVHPNAITYNVLI 1593
            WG+ PN ITYN+LI
Sbjct: 524  WGIEPNEITYNILI 537



 Score = 57.8 bits (138), Expect(2) = e-174
 Identities = 25/54 (46%), Positives = 39/54 (72%)
 Frame = +2

Query: 1655 SLCIIGDISKAKTLLKKMQVNGVKADIFSFNALIQSFCRMKEVEKAKRVLLTML 1816
            S C  GD  ++  L  KM+ NG+  D++++NA IQSFC+M++V+KA+ +L TML
Sbjct: 539  SCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTML 592



 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 35/122 (28%), Positives = 59/122 (48%)
 Frame = +1

Query: 484 FDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCK 663
           F ++   G+ P+   YN +I +   +   D +   F +MK +  +PD + YN  I   CK
Sbjct: 518 FKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCK 577

Query: 664 VGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDAT 843
           +  V +A  L+K M  +G  P+ FTY+ LI     + R  EA ++   ++     P+  T
Sbjct: 578 MRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYT 637

Query: 844 FR 849
            R
Sbjct: 638 KR 639


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  585 bits (1507), Expect(2) = e-173
 Identities = 283/533 (53%), Positives = 391/533 (73%), Gaps = 6/533 (1%)
 Frame = +1

Query: 13   SAEHKNPLTSTIDFTARGKFS---SISPQLKTATPIPIDHRYISQILSRKDWYLLLNNEL 183
            S  + +PLT+ +   +  + S   S++    + +  PID  YIS+IL  KDW+LLLN+E 
Sbjct: 54   SRGNPSPLTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEF 113

Query: 184  KSNKISLNPRIIVSVLQNQENPLHNLIFYLWVSNINPLFAKNQSVRGVLANTLYRKGP-- 357
            K+ ++ L+P+ +VS+LQNQ+NPL  + FY+WVSN++PL  K Q ++GVL   L+R+GP  
Sbjct: 114  KAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDR 173

Query: 358  -VLLSKELIELVRSSGCCITEDSLCILISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYN 534
             VLLS +L++ ++ SG  +TE+ LCIL  SWGRLGLA YC +VF QI  LGL P+TRLYN
Sbjct: 174  PVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYN 233

Query: 535  AVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCKVGVVDEASRLMKQMQEM 714
            AV+DAL+KSN+LDLAYLKFQQM +  C PDRFTYN LIHGVC++GVVDEA RLMKQM+ +
Sbjct: 234  AVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGL 293

Query: 715  GYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDATFRSLVNGLFRNTHPLEA 894
            GY PNVFTYTILIDG+ NAKR  EAFK+L+ MKE NV PN+AT RSLV+G+FR   P +A
Sbjct: 294  GYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKA 353

Query: 895  LKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFLKKIIERGYIPDTMTFNITITC 1074
             +LL +FV+ +  +   VC+++L+CLS+NS+  E  +FL K  + GY+P + TFNIT+ C
Sbjct: 354  FELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLAC 413

Query: 1075 LLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKNGRLLEGNRYLNQILKNGHLTN 1254
            +LK  DL VTC + D  +  G+  GF+TYL L+E+LYK G++  GNRY+++++ +G ++N
Sbjct: 414  VLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISN 473

Query: 1255 VISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTFNTLLSWHCKAGDMHEARELLK 1434
            + SYNM+ID  CK   +DRA + F D+    ISPN+VT+NTL+   C+ G+M +A+ELL+
Sbjct: 474  IYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE 533

Query: 1435 MLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVDWGVHPNAITYNVLI 1593
            MLL+   +PD +TF SLI GLC+ H+ ++AF C  EMV+W V PN ITYN+LI
Sbjct: 534  MLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILI 586



 Score = 53.1 bits (126), Expect(2) = e-173
 Identities = 23/54 (42%), Positives = 39/54 (72%)
 Frame = +2

Query: 1655 SLCIIGDISKAKTLLKKMQVNGVKADIFSFNALIQSFCRMKEVEKAKRVLLTML 1816
            S C IGD+S++  LL++M+++G++ D FSFNALIQ +      +KA+++  +ML
Sbjct: 588  SFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSML 641



 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 42/164 (25%), Positives = 82/164 (50%)
 Frame = +1

Query: 433  LISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADR 612
            LI  + R G      ++ + +      P    +N++ID L +++  + A+  F +M    
Sbjct: 515  LIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD 574

Query: 613  CNPDRFTYNFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAF 792
              P+  TYN LI   C +G V  ++ L++QM+  G  P+ F++  LI GY    R ++A 
Sbjct: 575  VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAE 634

Query: 793  KLLERMKESNVRPNDATFRSLVNGLFRNTHPLEALKLLSDFVDN 924
            KL + M    ++P++ T+ +L+  L ++    +A ++     +N
Sbjct: 635  KLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKEN 678


>ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  562 bits (1449), Expect(2) = e-170
 Identities = 272/509 (53%), Positives = 377/509 (74%), Gaps = 5/509 (0%)
 Frame = +1

Query: 82   SPQLKTATPIPIDHRYISQILSRKDWYLLLNNELKSNKISLNPRIIVSVLQNQENPLHNL 261
            +P    ++P PIDH YISQ+LSR DW +LLN++L S  + LNP   VS+ QNQ+NP H +
Sbjct: 34   TPPSSPSSP-PIDHLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSHAI 92

Query: 262  IFYLWVSNINPLFAKNQSVRGVLANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILIS 441
             F+ W+S++NP  A + SV   L NTL+RKGP LLS +L+  +R+ G  +TED LC L++
Sbjct: 93   KFHSWLSHVNPTLAAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCALLA 152

Query: 442  SWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNP 621
            SWGRLGLA Y A VF QISFLGL+P+TRLYNA+IDALVKSN++DLAYLKFQQM AD C  
Sbjct: 153  SWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVA 212

Query: 622  DRFTYNFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLL 801
            DRFTYN LIHGVCKVGVVDEA RL++QM++ G+ PNVFTYT+LI+G+C A R++EAF + 
Sbjct: 213  DRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVF 272

Query: 802  ERMKESNVRPNDATFRSLVNGLFRNTHPLEALKLLSDFVDNED----VLPVAVCESVLHC 969
            E MK+S V PN+AT R+LV+G+FR   P +AL+LLS+F+D E     V  +  C++VL+C
Sbjct: 273  ETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYC 332

Query: 970  LSSNSLPKETAVFLKKIIER-GYIPDTMTFNITITCLLKGSDLMVTCDIVDGLIGRGMIL 1146
            L++NS+ KE  VFL++++ R GY P    FN+ + CL+KG++L  TCD+ + L  +G+  
Sbjct: 333  LANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKA 392

Query: 1147 GFNTYLLLVESLYKNGRLLEGNRYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTF 1326
            G   YL L+E LYKN    EG+R   Q++ +G ++NV SYNMII+ FC+  ++D A + F
Sbjct: 393  GIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAF 452

Query: 1327 LDMLQHHISPNLVTFNTLLSWHCKAGDMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRT 1506
             DM    + PNLVTFNTL++ HCK G + +AR+LL+ LL++GLKPD +TF+S++ GLC+ 
Sbjct: 453  RDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQI 512

Query: 1507 HQIDDAFDCLNEMVDWGVHPNAITYNVLI 1593
             + ++A +C  EM++WG++PNA+ YN+LI
Sbjct: 513  KRTEEALECFTEMIEWGINPNAVIYNILI 541



 Score = 63.9 bits (154), Expect(2) = e-170
 Identities = 28/53 (52%), Positives = 41/53 (77%)
 Frame = +2

Query: 1655 SLCIIGDISKAKTLLKKMQVNGVKADIFSFNALIQSFCRMKEVEKAKRVLLTM 1813
            SLC IGD++++  LL++MQ  G+  D +S+NALIQ FCRM +VEKAK++  +M
Sbjct: 543  SLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSM 595



 Score =  112 bits (281), Expect = 2e-22
 Identities = 88/462 (19%), Positives = 190/462 (41%), Gaps = 40/462 (8%)
 Frame = +1

Query: 328  LANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRLGLAKYCAQVFDQISFLG 507
            L + L +   + L+    + + +  C     +   LI    ++G+     ++  Q+   G
Sbjct: 185  LIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKG 244

Query: 508  LTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCKVGVVDEAS 687
              P+   Y  +I+    ++ +D A+  F+ MK     P+  T   L+HGV +     +A 
Sbjct: 245  HFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKAL 304

Query: 688  RLMKQM-----------------------------QEM-----------GYVPNVFTYTI 747
             L+ +                              +EM           GY P    + +
Sbjct: 305  ELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNV 364

Query: 748  LIDGYCNAKRIEEAFKLLERMKESNVRPNDATFRSLVNGLFRNTHPLEALKLLSDFVDNE 927
            ++        + E   + E +++  V+     + +L+  L++N    E  ++    + + 
Sbjct: 365  VMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDG 424

Query: 928  DVLPVAVCESVLHCLSSNSLPKETAVFLKKIIERGYIPDTMTFNITITCLLKGSDLMVTC 1107
             +  V     +++C     L    +   + +  RG +P+ +TFN  I    K   +    
Sbjct: 425  LISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKAR 484

Query: 1108 DIVDGLIGRGMILGFNTYLLLVESLYKNGRLLEGNRYLNQILKNGHLTNVISYNMIIDSF 1287
             +++ L+  G+     T+  +V+ L +  R  E      ++++ G   N + YN++I S 
Sbjct: 485  KLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSL 544

Query: 1288 CKTGMIDRAMKTFLDMLQHHISPNLVTFNTLLSWHCKAGDMHEARELLKMLLQHGLKPDT 1467
            C  G + R++K    M +  ISP+  ++N L+   C+   + +A++L   + + GL PD 
Sbjct: 545  CTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDN 604

Query: 1468 YTFTSLIHGLCRTHQIDDAFDCLNEMVDWGVHPNAITYNVLI 1593
            YT+++ I  L  + ++++A      M   G  P++   N++I
Sbjct: 605  YTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLII 646



 Score =  109 bits (273), Expect = 2e-21
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 1/296 (0%)
 Frame = +1

Query: 481  VFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVC 660
            VF+ +   G+      Y A+I+ L K+   +     + Q+ +D    + F+YN +I+  C
Sbjct: 381  VFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFC 440

Query: 661  KVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDA 840
            +  ++D AS   + MQ  G VPN+ T+  LI+G+C    I++A KLLE + E+ ++P+  
Sbjct: 441  RAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIF 500

Query: 841  TFRSLVNGLFRNTHPLEALKLLSDFVDNEDVLPVAVCESVL-HCLSSNSLPKETAVFLKK 1017
            TF S+V+GL +     EAL+  ++ ++   + P AV  ++L   L +      +   L++
Sbjct: 501  TFSSIVDGLCQIKRTEEALECFTEMIE-WGINPNAVIYNILIRSLCTIGDVARSVKLLRR 559

Query: 1018 IIERGYIPDTMTFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKNGR 1197
            + + G  PDT ++N  I    + + +     + D +   G+     TY   +E+L ++GR
Sbjct: 560  MQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGR 619

Query: 1198 LLEGNRYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLV 1365
            L E  +    +  NG   +    N+II    +   ++ A        Q  IS N +
Sbjct: 620  LEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGISLNSI 675



 Score =  105 bits (263), Expect = 3e-20
 Identities = 81/361 (22%), Positives = 157/361 (43%), Gaps = 4/361 (1%)
 Frame = +1

Query: 505  GLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCKVGVVDEA 684
            G  P   ++N V+  LVK   L      F+ ++          Y  LI  + K    +E 
Sbjct: 354  GYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEG 413

Query: 685  SRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDATFRSLVNG 864
             R+  Q+   G + NVF+Y ++I+ +C AK ++ A +    M+   V PN  TF +L+NG
Sbjct: 414  DRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLING 473

Query: 865  LFRNTHPLEALKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFLKKIIERGYIPD 1044
                                             HC   +    +    L+ ++E G  PD
Sbjct: 474  ---------------------------------HC--KDGAIDKARKLLESLLENGLKPD 498

Query: 1045 TMTFNITI--TCLLKGSDLMVTC--DIVDGLIGRGMILGFNTYLLLVESLYKNGRLLEGN 1212
              TF+  +   C +K ++  + C  ++++  I    ++    Y +L+ SL   G +    
Sbjct: 499  IFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVI----YNILIRSLCTIGDVARSV 554

Query: 1213 RYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTFNTLLSWH 1392
            + L ++ K G   +  SYN +I  FC+   +++A K F  M +  ++P+  T++  +   
Sbjct: 555  KLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEAL 614

Query: 1393 CKAGDMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVDWGVHPNA 1572
             ++G + EA+++   +  +G  PD+Y    +I  L +   +++A + +      G+  N+
Sbjct: 615  SESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGISLNS 674

Query: 1573 I 1575
            I
Sbjct: 675  I 675



 Score = 67.8 bits (164), Expect = 9e-09
 Identities = 43/210 (20%), Positives = 99/210 (47%), Gaps = 9/210 (4%)
 Frame = +1

Query: 304  KNQSVRGVLANTLY---------RKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRL 456
            ++  VRGV+ N +          + G +  +++L+E +  +G      +   ++    ++
Sbjct: 453  RDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQI 512

Query: 457  GLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTY 636
               +   + F ++   G+ P+  +YN +I +L     +  +    ++M+ +  +PD ++Y
Sbjct: 513  KRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSY 572

Query: 637  NFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKE 816
            N LI   C++  V++A +L   M   G  P+ +TY+  I+    + R+EEA K+   M+ 
Sbjct: 573  NALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEA 632

Query: 817  SNVRPNDATFRSLVNGLFRNTHPLEALKLL 906
            +   P+      ++  L +  +  EA  ++
Sbjct: 633  NGCSPDSYICNLIIKILVQQEYVEEAQNII 662



 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 35/135 (25%), Positives = 66/135 (48%)
 Frame = +1

Query: 430 ILISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKAD 609
           ILI S   +G      ++  ++   G++P T  YNA+I    + N ++ A   F  M   
Sbjct: 539 ILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRS 598

Query: 610 RCNPDRFTYNFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEA 789
             NPD +TY+  I  + + G ++EA ++   M+  G  P+ +   ++I      + +EEA
Sbjct: 599 GLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEA 658

Query: 790 FKLLERMKESNVRPN 834
             ++ER ++  +  N
Sbjct: 659 QNIIERCRQKGISLN 673



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
 Frame = +1

Query: 286 INPLFAKNQSVRGVLANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRLGLA 465
           INP    N  +  +L  +L   G V  S +L+  ++  G      S   LI  + R+   
Sbjct: 530 INP----NAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKV 585

Query: 466 KYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFL 645
           +   ++FD +S  GL P    Y+A I+AL +S  L+ A   F  M+A+ C+PD +  N +
Sbjct: 586 EKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLI 645

Query: 646 IHGVCKVGVVDEASRLMKQMQEMGY----VPNV 732
           I  + +   V+EA  ++++ ++ G     +PN+
Sbjct: 646 IKILVQQEYVEEAQNIIERCRQKGISLNSIPNL 678


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331015|gb|EFH61434.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 653

 Score =  571 bits (1472), Expect(2) = e-169
 Identities = 277/494 (56%), Positives = 364/494 (73%)
 Frame = +1

Query: 112  PIDHRYISQILSRKDWYLLLNNELKSNKISLNPRIIVSVLQNQENPLHNLIFYLWVSNIN 291
            P++ RYISQ++ RKDW+L+LN E  +++I LN R ++SVLQNQ+NPLH+L FYLWVSN +
Sbjct: 38   PLNQRYISQVIERKDWFLILNQEFTTHRIGLNIRFVISVLQNQDNPLHSLRFYLWVSNTD 97

Query: 292  PLFAKNQSVRGVLANTLYRKGPVLLSKELIELVRSSGCCITEDSLCILISSWGRLGLAKY 471
            P++AK+QS++ VL N L+RKGP+LLS EL++ +R SG  IT++ +C+LI SWGRLGLAKY
Sbjct: 98   PVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRESGYRITDELMCVLIGSWGRLGLAKY 157

Query: 472  CAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRCNPDRFTYNFLIH 651
            C  VF QISFLG+ PSTRLYNAVIDALVKSN+L+LAY+KFQQM++D C PDRFTYN LIH
Sbjct: 158  CNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIH 217

Query: 652  GVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFKLLERMKESNVRP 831
            GVCK GVVDEA RL+KQM+  G  PNVFTYTILIDG+  A RIEEA K LE M+   + P
Sbjct: 218  GVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNP 277

Query: 832  NDATFRSLVNGLFRNTHPLEALKLLSDFVDNEDVLPVAVCESVLHCLSSNSLPKETAVFL 1011
            N+AT R+LV+G+FR   P EA ++L  F++   +L     ++VL+CLS+NS+ KETA+FL
Sbjct: 278  NEATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFL 337

Query: 1012 KKIIERGYIPDTMTFNITITCLLKGSDLMVTCDIVDGLIGRGMILGFNTYLLLVESLYKN 1191
            +K  ERGYIPD+ TFN  + CLLKG  L+ TC I D  + RG   GFN YL+LV++L   
Sbjct: 338  RKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNA 397

Query: 1192 GRLLEGNRYLNQILKNGHLTNVISYNMIIDSFCKTGMIDRAMKTFLDMLQHHISPNLVTF 1371
             R   G+RYL Q+  +G L++V +YN +ID  CK    + A     +M    ISPNL+TF
Sbjct: 398  QRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITF 457

Query: 1372 NTLLSWHCKAGDMHEARELLKMLLQHGLKPDTYTFTSLIHGLCRTHQIDDAFDCLNEMVD 1551
            NT LS +   GD+ +   +++ LL+HG  PD  TF+ +I+ LCR  +I DAFDC  EM++
Sbjct: 458  NTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLE 517

Query: 1552 WGVHPNAITYNVLI 1593
            WG+ PN ITYN+LI
Sbjct: 518  WGIKPNEITYNILI 531



 Score = 53.9 bits (128), Expect(2) = e-169
 Identities = 23/54 (42%), Positives = 39/54 (72%)
 Frame = +2

Query: 1655 SLCIIGDISKAKTLLKKMQVNGVKADIFSFNALIQSFCRMKEVEKAKRVLLTML 1816
            S C  GD  ++  L   M+ +G+  +++++NA+IQSFC+MK+V+KA+ +L TML
Sbjct: 533  SSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTML 586



 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 40/158 (25%), Positives = 79/158 (50%)
 Frame = +1

Query: 436 ISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALVKSNALDLAYLKFQQMKADRC 615
           +S +   G  K    V +++   G  P    ++ +I+ L ++  +  A+  F++M     
Sbjct: 461 LSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGI 520

Query: 616 NPDRFTYNFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVFTYTILIDGYCNAKRIEEAFK 795
            P+  TYN LI   C  G    + +L   M+E G  PN++ Y  +I  +C  K++++A +
Sbjct: 521 KPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEE 580

Query: 796 LLERMKESNVRPNDATFRSLVNGLFRNTHPLEALKLLS 909
           LL+ M    ++P++ T+ +L+  L  +    EA ++ S
Sbjct: 581 LLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFS 618



 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 40/158 (25%), Positives = 70/158 (44%)
 Frame = +1

Query: 376 LIELVRSSGCCITEDSLCILISSWGRLGLAKYCAQVFDQISFLGLTPSTRLYNAVIDALV 555
           ++E +   GC     +  ++I+   R    K     F ++   G+ P+   YN +I +  
Sbjct: 476 VVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSC 535

Query: 556 KSNALDLAYLKFQQMKADRCNPDRFTYNFLIHGVCKVGVVDEASRLMKQMQEMGYVPNVF 735
            +     +   F  MK    +P+ + YN +I   CK+  V +A  L+K M  +G  P+ F
Sbjct: 536 STGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNF 595

Query: 736 TYTILIDGYCNAKRIEEAFKLLERMKESNVRPNDATFR 849
           TY+ LI     + R  EA ++   M+     P+  T R
Sbjct: 596 TYSTLIKALSESGRESEAREMFSSMERHGCVPDSYTKR 633