BLASTX nr result

ID: Atractylodes21_contig00011889 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00011889
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor...   159   3e-37
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor...   159   3e-37
emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]   153   1e-35
ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|2...   152   2e-35
ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35

>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like [Vitis vinifera]
          Length = 1172

 Score =  159 bits (401), Expect = 3e-37
 Identities = 82/111 (73%), Positives = 88/111 (79%)
 Frame = -2

Query: 334 LKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEIGRKCGTVDEFDSKLKENGAEMPDYF 155
           LKKLEYLSLVSKVCTELE+HLG GDKVLAEFIT++GRKC TVDEFDSKLKENGAEMPDYF
Sbjct: 10  LKKLEYLSLVSKVCTELETHLGVGDKVLAEFITDMGRKCETVDEFDSKLKENGAEMPDYF 69

Query: 154 VRTLLTIIHAILPPXXXXXXXXXXXXXXXXXXSNFPALNIGDTKDRVKALE 2
           VRTLLTIIHAILPP                  S FPAL IGD+K+RV+ LE
Sbjct: 70  VRTLLTIIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKERVRELE 120


>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like isoform 2 [Vitis vinifera]
          Length = 1175

 Score =  159 bits (401), Expect = 3e-37
 Identities = 82/111 (73%), Positives = 88/111 (79%)
 Frame = -2

Query: 334 LKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEIGRKCGTVDEFDSKLKENGAEMPDYF 155
           LKKLEYLSLVSKVCTELE+HLG GDKVLAEFIT++GRKC TVDEFDSKLKENGAEMPDYF
Sbjct: 10  LKKLEYLSLVSKVCTELETHLGVGDKVLAEFITDMGRKCETVDEFDSKLKENGAEMPDYF 69

Query: 154 VRTLLTIIHAILPPXXXXXXXXXXXXXXXXXXSNFPALNIGDTKDRVKALE 2
           VRTLLTIIHAILPP                  S FPAL IGD+K+RV+ LE
Sbjct: 70  VRTLLTIIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKERVRELE 120


>emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
          Length = 1162

 Score =  153 bits (387), Expect = 1e-35
 Identities = 79/106 (74%), Positives = 84/106 (79%)
 Frame = -2

Query: 334 LKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEIGRKCGTVDEFDSKLKENGAEMPDYF 155
           LKKLEYLSLVSKVCTELE+HLG GDKVLAEFIT++GRKC TVDEFDSKLKENGAEMPDYF
Sbjct: 10  LKKLEYLSLVSKVCTELETHLGVGDKVLAEFITDMGRKCETVDEFDSKLKENGAEMPDYF 69

Query: 154 VRTLLTIIHAILPPXXXXXXXXXXXXXXXXXXSNFPALNIGDTKDR 17
           VRTLLTIIHAILPP                  S FPAL IGD+K+R
Sbjct: 70  VRTLLTIIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKER 115


>ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|222859030|gb|EEE96577.1|
           predicted protein [Populus trichocarpa]
          Length = 1207

 Score =  152 bits (385), Expect = 2e-35
 Identities = 77/114 (67%), Positives = 88/114 (77%)
 Frame = -2

Query: 343 EPSLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEIGRKCGTVDEFDSKLKENGAEMP 164
           +  LKKLEYLSLVSKVC+ELE+HLGFGDK+LAEFITE+GR C TVDEFD+KLKENGAEMP
Sbjct: 8   DAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCDTVDEFDAKLKENGAEMP 67

Query: 163 DYFVRTLLTIIHAILPPXXXXXXXXXXXXXXXXXXSNFPALNIGDTKDRVKALE 2
           DYFVRTLLTIIHAILPP                  S F AL+I D++DRVK ++
Sbjct: 68  DYFVRTLLTIIHAILPPKAEKEVKKDMEGDGSGKDSKFKALSIQDSRDRVKEID 121


>ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1|
           predicted protein [Populus trichocarpa]
          Length = 1171

 Score =  152 bits (384), Expect = 3e-35
 Identities = 77/114 (67%), Positives = 88/114 (77%)
 Frame = -2

Query: 343 EPSLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEIGRKCGTVDEFDSKLKENGAEMP 164
           +  LKKLEYLSLVSKVC+ELE+HLGFGDK+LAEFITE+GR C TVDEFD+KLKENGAEMP
Sbjct: 8   DAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCETVDEFDAKLKENGAEMP 67

Query: 163 DYFVRTLLTIIHAILPPXXXXXXXXXXXXXXXXXXSNFPALNIGDTKDRVKALE 2
           DYFVRTLLTIIHAILPP                  S F AL+I D++DRVK ++
Sbjct: 68  DYFVRTLLTIIHAILPPKAEKEVKKDMEGDGSGKDSKFKALSIKDSRDRVKEID 121


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