BLASTX nr result

ID: Atractylodes21_contig00011486 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00011486
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, pu...    62   4e-08
gb|AFK41187.1| unknown [Lotus japonicus]                               59   5e-07

>ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
           communis] gi|223531977|gb|EEF33789.1| U2 snrnp auxiliary
           factor, small subunit, putative [Ricinus communis]
          Length = 313

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/85 (45%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = -3

Query: 244 EENVCNRGGYCNFMHLKKISKELXXXXXXXXXXXXXXXXXXXXXRN--YDDRPQXXXXXX 71
           EENVCNRGGYCNFMHLKKIS+EL                     R+  YD+RP       
Sbjct: 160 EENVCNRGGYCNFMHLKKISRELRRRLFGRNRRRRSRSRSHSPSRHRGYDERPHGGRGFG 219

Query: 70  XXXXXGYNDHR--NHDRGRRPRSRS 2
                  +D R  +H+RGRRPRSRS
Sbjct: 220 RR-----DDDRAHHHERGRRPRSRS 239


>gb|AFK41187.1| unknown [Lotus japonicus]
          Length = 318

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 36/89 (40%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = -3

Query: 244 EENVCNRGGYCNFMHLKKISKEL--------XXXXXXXXXXXXXXXXXXXXXRNYDDRPQ 89
           EENVCNRGGYCNFMHLKKIS++L                             RNY++RPQ
Sbjct: 164 EENVCNRGGYCNFMHLKKISRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQ 223

Query: 88  XXXXXXXXXXXGYNDHRNHDRGRRPRSRS 2
                          H  H  GR+PRSRS
Sbjct: 224 FGGRGGSGRRDFDRSHGRH--GRKPRSRS 250


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