BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00011300
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...    77   4e-16
emb|CBI32760.3| unnamed protein product [Vitis vinifera]               77   4e-16
gb|AFK38759.1| unknown [Lotus japonicus]                               74   1e-15
dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]      77   4e-15
ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thal...    77   5e-15

>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score = 76.6 bits (187), Expect(2) = 4e-16
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +3

Query: 78  QEGSMGLMWSVQKFKPGAGCRFAAYAYLWIGQSIRRAIFQNFKFIRLP 221
           QEGSMGLM SV+KFKP AGCRFA+YAY WI Q++R+AIFQ+ + IRLP
Sbjct: 363 QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 410



 Score = 32.7 bits (73), Expect(2) = 4e-16
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 247 IVAQAGMPIEKLQKLCSIQKITLSLQ*LTWPDDSTTYE 360
           I  + G+ IEKLQ+L    ++ LS+Q   W D  TT++
Sbjct: 440 IAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQ 477


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score = 76.6 bits (187), Expect(2) = 4e-16
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +3

Query: 78  QEGSMGLMWSVQKFKPGAGCRFAAYAYLWIGQSIRRAIFQNFKFIRLP 221
           QEGSMGLM SV+KFKP AGCRFA+YAY WI Q++R+AIFQ+ + IRLP
Sbjct: 352 QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 399



 Score = 32.7 bits (73), Expect(2) = 4e-16
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 247 IVAQAGMPIEKLQKLCSIQKITLSLQ*LTWPDDSTTYE 360
           I  + G+ IEKLQ+L    ++ LS+Q   W D  TT++
Sbjct: 429 IAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQ 466


>gb|AFK38759.1| unknown [Lotus japonicus]
          Length = 311

 Score = 74.3 bits (181), Expect(2) = 1e-15
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +3

Query: 78  QEGSMGLMWSVQKFKPGAGCRFAAYAYLWIGQSIRRAIFQNFKFIRLP 221
           QEGSMGLM SV+KFKP AGCRFA+YAY WI Q+IRRA+F + + IRLP
Sbjct: 102 QEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLP 149



 Score = 33.5 bits (75), Expect(2) = 1e-15
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 247 IVAQAGMPIEKLQKLCSIQKITLSLQ*LTWPDDSTTYE 360
           +  + G+ ++KL+ L S  +I LS+Q   W D  TTY+
Sbjct: 179 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQ 216


>dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
          Length = 547

 Score = 77.4 bits (189), Expect(2) = 4e-15
 Identities = 38/62 (61%), Positives = 46/62 (74%)
 Frame = +3

Query: 78  QEGSMGLMWSVQKFKPGAGCRFAAYAYLWIGQSIRRAIFQNFKFIRLPVIMSLYKSNCSP 257
           QEGSMGLM SV+KFKP +GCRFA YAY WI QSIR++IFQN + IRLP  + +     S 
Sbjct: 338 QEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSE 397

Query: 258 SR 263
           +R
Sbjct: 398 AR 399



 Score = 28.5 bits (62), Expect(2) = 4e-15
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 247 IVAQAGMPIEKLQKLCSIQKITLSLQ*LTWPDDSTTYE 360
           + +  G+  EKL KL    +  LS+Q   W D  TT++
Sbjct: 415 LASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQ 452


>ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
           gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA
           polymerase sigma factor sigF, chloroplastic; Short=Sigma
           factor F; Short=Sigma-F; AltName: Full=Protein SINGLET
           OXYGEN-LINKED DEATH ACTIVATOR 8; AltName: Full=RNA
           polymerase sigma factor sig6; Short=Atsig6; Short=Sigma
           factor 6; Flags: Precursor gi|7209640|dbj|BAA92288.1|
           SigF [Arabidopsis thaliana] gi|7688083|emb|CAB89775.1|
           sigma factor-like protein [Arabidopsis thaliana]
           gi|16604647|gb|AAL24116.1| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20197948|gb|AAD31584.2| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20259557|gb|AAM14121.1| putative RNA polymerase
           sigma-70 factor protein [Arabidopsis thaliana]
           gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit
           F [Arabidopsis thaliana]
          Length = 547

 Score = 77.4 bits (189), Expect(2) = 5e-15
 Identities = 38/62 (61%), Positives = 46/62 (74%)
 Frame = +3

Query: 78  QEGSMGLMWSVQKFKPGAGCRFAAYAYLWIGQSIRRAIFQNFKFIRLPVIMSLYKSNCSP 257
           QEGSMGLM SV+KFKP +GCRFA YAY WI QSIR++IFQN + IRLP  + +     S 
Sbjct: 338 QEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSE 397

Query: 258 SR 263
           +R
Sbjct: 398 AR 399



 Score = 28.1 bits (61), Expect(2) = 5e-15
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 247 IVAQAGMPIEKLQKLCSIQKITLSLQ*LTWPDDSTTYE 360
           +    G+  EKL KL    +  LS+Q   W D  TT++
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQ 452