BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00011048
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              359   7e-97
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   359   7e-97
ref|XP_002300065.1| predicted protein [Populus trichocarpa] gi|2...   330   4e-88
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   303   6e-80
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   303   6e-80

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  359 bits (922), Expect = 7e-97
 Identities = 176/296 (59%), Positives = 225/296 (76%)
 Frame = +1

Query: 373  LAFTKLPFVEDVGPRRIKSIKFSMLSDADVLKMGEVQVSHSQCYVSQDNKSPVANGLLDP 552
            + FTK P++EDVGPR+I+SI+F++ S++++ K  EVQV     Y +  N+ P+ NGLLDP
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDA--NRKPIENGLLDP 62

Query: 553  HMGPPNKFGTCETCHGDFQNCPGHFGYLTLVLPVYNVGYLSHIVDILKCICKFCSRILLL 732
             MGP NK GTC TC G+F++CPGH GYLTL LPVYNVGYLS IVDILKCICK CSR+LL 
Sbjct: 63   RMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLD 122

Query: 733  EEERVDFLKKMRNPKLDHLKKNEIFKRVVKRCTAMASSKKAVTCSRCGYINGIVKKAVGM 912
            E+   D+LKKMR+ K++ LKK E+ K++V++CTAMASSKKAV CSRCGY+NGIVKKAV +
Sbjct: 123  EKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSV 182

Query: 913  VGVIHDRNKVQDTTSKESNDAISHMKESKTPVNLSSLLNPDKVLKLFKKMXXXXXXXXXX 1092
            +G+IHDR+K+ D + +E + AISH KESK   ++  +LNP KVL LFK+M          
Sbjct: 183  LGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNL 242

Query: 1093 XXRPEKLIITNIPVPPLPIRPSVKVDGGTASNENDVTSRLGEIIKVNARLNQVLSE 1260
              RPEKL++TNI VPP+ IRPSV +DGGT SNENDVT RL  II+ NA L+Q L +
Sbjct: 243  AERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQD 298


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  359 bits (922), Expect = 7e-97
 Identities = 176/296 (59%), Positives = 225/296 (76%)
 Frame = +1

Query: 373  LAFTKLPFVEDVGPRRIKSIKFSMLSDADVLKMGEVQVSHSQCYVSQDNKSPVANGLLDP 552
            + FTK P++EDVGPR+I+SI+F++ S++++ K  EVQV     Y +  N+ P+ NGLLDP
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDA--NRKPIENGLLDP 62

Query: 553  HMGPPNKFGTCETCHGDFQNCPGHFGYLTLVLPVYNVGYLSHIVDILKCICKFCSRILLL 732
             MGP NK GTC TC G+F++CPGH GYLTL LPVYNVGYLS IVDILKCICK CSR+LL 
Sbjct: 63   RMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLD 122

Query: 733  EEERVDFLKKMRNPKLDHLKKNEIFKRVVKRCTAMASSKKAVTCSRCGYINGIVKKAVGM 912
            E+   D+LKKMR+ K++ LKK E+ K++V++CTAMASSKKAV CSRCGY+NGIVKKAV +
Sbjct: 123  EKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSV 182

Query: 913  VGVIHDRNKVQDTTSKESNDAISHMKESKTPVNLSSLLNPDKVLKLFKKMXXXXXXXXXX 1092
            +G+IHDR+K+ D + +E + AISH KESK   ++  +LNP KVL LFK+M          
Sbjct: 183  LGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNL 242

Query: 1093 XXRPEKLIITNIPVPPLPIRPSVKVDGGTASNENDVTSRLGEIIKVNARLNQVLSE 1260
              RPEKL++TNI VPP+ IRPSV +DGGT SNENDVT RL  II+ NA L+Q L +
Sbjct: 243  AERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQD 298


>ref|XP_002300065.1| predicted protein [Populus trichocarpa] gi|222847323|gb|EEE84870.1|
            predicted protein [Populus trichocarpa]
          Length = 1394

 Score =  330 bits (847), Expect = 4e-88
 Identities = 170/305 (55%), Positives = 220/305 (72%), Gaps = 1/305 (0%)
 Frame = +1

Query: 349  RNRGQDTVLAFTKLPFVEDVGPRRIKSIKFSMLSDADVLKMGEVQVSHSQCYVSQDNKSP 528
            + R QD +  +TK P++EDVGPRRIKSI+FS +S +D+LK  E QV   Q Y +  NK  
Sbjct: 2    QQRAQDII--YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDA--NKKA 57

Query: 529  VANGLLDPHMGPPNKFGTCETCHGDFQNCPGHFGYLTLVLPVYNVGYLSHIVDILKCICK 708
            +  GLLD  MG PNK GTC+TC G F +CPGHFGYL LVLPVYNVGYLS I+DILKCICK
Sbjct: 58   IVGGLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICK 117

Query: 709  FCSRILLLEEERVDFLKKMRNPKLDHLKKNEIFKRVVKRCTAMASSKKAVTCSRCGYING 888
             CSR+L+ E+ R  +LK+MRNP+ + LKKNE+ K +VK+C++MASS KAV C RCGY+NG
Sbjct: 118  SCSRVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASS-KAVKCLRCGYMNG 176

Query: 889  IVKKAVGMVGVIHDRNKVQDTTSKESNDAISHMKESKTPVNLSS-LLNPDKVLKLFKKMX 1065
            +VKKA  +VG+IHDR+K+ D   +E   AI H +E++ P+ L++ +LNP +VL LF++M 
Sbjct: 177  MVKKAGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMV 236

Query: 1066 XXXXXXXXXXXRPEKLIITNIPVPPLPIRPSVKVDGGTASNENDVTSRLGEIIKVNARLN 1245
                       RPEKLIIT I VPP+ IRPSV  + G+ SNEND+T RL +II+ NA+L 
Sbjct: 237  EEDCELLYLQGRPEKLIITTIAVPPISIRPSVFTE-GSQSNENDITERLKQIIQFNAKLR 295

Query: 1246 QVLSE 1260
              L E
Sbjct: 296  LELLE 300


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  303 bits (776), Expect = 6e-80
 Identities = 159/299 (53%), Positives = 207/299 (69%), Gaps = 3/299 (1%)
 Frame = +1

Query: 373  LAFTKLPFVEDVGPRRIKSIKFSMLSDADVLKMGEVQVSHSQCYVSQDNKSPVANGLLDP 552
            + FTK P++EDVGP +IKSI FS+LSD +V+K  EVQV +   Y    +  P  NGLLDP
Sbjct: 7    IEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLY--DHSFKPYENGLLDP 64

Query: 553  HMGPPNKFGTCETCHGDFQNCPGHFGYLTLVLPVYNVGYLSHIVDILKCICKFCSRILLL 732
             MGPPNK   C TC G+FQNCPGH+GYL L LPVYNVGY + I+DILKCICK CS +LL 
Sbjct: 65   RMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLD 124

Query: 733  EEERVDFLKKMRNPKLDHLKKNEIFKRVVKRCTAMASSKKAVTCSRCGYINGIVKKAVGM 912
            E+   D L+KMRNP+++ LKK E+ K VVK+C+ MA S++ +TC +CGY+NG+VKK    
Sbjct: 125  EKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMA-SQRIITCKKCGYLNGMVKKIAAQ 183

Query: 913  --VGVIHDRNKVQDTTSKESNDAISHMKESKTPVN-LSSLLNPDKVLKLFKKMXXXXXXX 1083
              +G+ HDR+K+      E   AISH K+S   +N L+ +L+P+ VL LFK+M       
Sbjct: 184  FGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCEL 243

Query: 1084 XXXXXRPEKLIITNIPVPPLPIRPSVKVDGGTASNENDVTSRLGEIIKVNARLNQVLSE 1260
                 RPE LIIT + VPPL IRPSV + GG  SNEND+T+RL +II  NA L+++LS+
Sbjct: 244  LYIAYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGNASLHKILSQ 301


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  303 bits (776), Expect = 6e-80
 Identities = 159/299 (53%), Positives = 207/299 (69%), Gaps = 3/299 (1%)
 Frame = +1

Query: 373  LAFTKLPFVEDVGPRRIKSIKFSMLSDADVLKMGEVQVSHSQCYVSQDNKSPVANGLLDP 552
            + FTK P++EDVGP +IKSI FS+LSD +V+K  EVQV +   Y    +  P  NGLLDP
Sbjct: 7    IEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLY--DHSFKPYENGLLDP 64

Query: 553  HMGPPNKFGTCETCHGDFQNCPGHFGYLTLVLPVYNVGYLSHIVDILKCICKFCSRILLL 732
             MGPPNK   C TC G+FQNCPGH+GYL L LPVYNVGY + I+DILKCICK CS +LL 
Sbjct: 65   RMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLD 124

Query: 733  EEERVDFLKKMRNPKLDHLKKNEIFKRVVKRCTAMASSKKAVTCSRCGYINGIVKKAVGM 912
            E+   D L+KMRNP+++ LKK E+ K VVK+C+ MA S++ +TC +CGY+NG+VKK    
Sbjct: 125  EKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMA-SQRIITCKKCGYLNGMVKKIAAQ 183

Query: 913  --VGVIHDRNKVQDTTSKESNDAISHMKESKTPVN-LSSLLNPDKVLKLFKKMXXXXXXX 1083
              +G+ HDR+K+      E   AISH K+S   +N L+ +L+P+ VL LFK+M       
Sbjct: 184  FGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCEL 243

Query: 1084 XXXXXRPEKLIITNIPVPPLPIRPSVKVDGGTASNENDVTSRLGEIIKVNARLNQVLSE 1260
                 RPE LIIT + VPPL IRPSV + GG  SNEND+T+RL +II  NA L+++LS+
Sbjct: 244  LYIAYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGNASLHKILSQ 301