BLASTX nr result

ID: Atractylodes21_contig00010542 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00010542
         (532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein ...   129   2e-28
ref|XP_002309412.1| predicted protein [Populus trichocarpa] gi|2...   129   3e-28
ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein ...   127   8e-28
ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein ...   127   8e-28
ref|XP_002530529.1| RNA binding protein, putative [Ricinus commu...   127   1e-27

>ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Vitis vinifera] gi|297740158|emb|CBI30340.3| unnamed
           protein product [Vitis vinifera]
          Length = 133

 Score =  129 bits (325), Expect = 2e-28
 Identities = 64/95 (67%), Positives = 77/95 (81%)
 Frame = +3

Query: 3   GLSFYTTEKALLDAFSQYGQVVEATVTMDKVSSRSKGFGFVTYASQDEAEKAITEMNGKP 182
           GLSFYTTEK L + FSQYGQVVEA + MD+VS RSKGFGFVT+AS++EA+KA TEM+GK 
Sbjct: 40  GLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKE 99

Query: 183 LHGRIICVELARPRTPFGSGRGVPIARGPPEPPTE 287
           L+GR I V+ A+PR  FG   G+PIARGPPEP  +
Sbjct: 100 LNGRTIFVDYAKPRADFGG--GMPIARGPPEPTAD 132


>ref|XP_002309412.1| predicted protein [Populus trichocarpa] gi|222855388|gb|EEE92935.1|
           predicted protein [Populus trichocarpa]
          Length = 139

 Score =  129 bits (324), Expect = 3e-28
 Identities = 63/96 (65%), Positives = 76/96 (79%)
 Frame = +3

Query: 3   GLSFYTTEKALLDAFSQYGQVVEATVTMDKVSSRSKGFGFVTYASQDEAEKAITEMNGKP 182
           GLS YTTE  L +AFSQYGQVVEA + MD+   RSKGFGFVTYAS+DEA+KA+ EMNGK 
Sbjct: 45  GLSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDEMNGKA 104

Query: 183 LHGRIICVELARPRTPFGSGRGVPIARGPPEPPTEQ 290
           L+GR+I V+ A+ +T FG   G+PIARGPPEP T +
Sbjct: 105 LNGRVIYVDYAKLKTNFGG--GIPIARGPPEPTTSE 138


>ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Cucumis sativus]
          Length = 134

 Score =  127 bits (320), Expect = 8e-28
 Identities = 64/97 (65%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   GLSFYTTEKALLDAFSQYGQVVEATVTMDKVSSRSKGFGFVTYASQDEAEKAITEMNGKP 182
           GLS+YTT+K L +AFSQYGQV+EATV MD+VS +SKGFGFVT+AS DEA  A++EMNGKP
Sbjct: 41  GLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP 100

Query: 183 LHGRIICVELARPRTPFGSGRG-VPIARGPPEPPTEQ 290
           L+GR+I V  A+P T   S RG +PIARGPPE  T++
Sbjct: 101 LNGRVIFVNYAKPTT---SSRGAIPIARGPPEEKTDK 134


>ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Cucumis sativus]
          Length = 134

 Score =  127 bits (320), Expect = 8e-28
 Identities = 64/97 (65%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   GLSFYTTEKALLDAFSQYGQVVEATVTMDKVSSRSKGFGFVTYASQDEAEKAITEMNGKP 182
           GLS+YTT+K L +AFSQYGQV+EATV MD+VS +SKGFGFVT+AS DEA  A++EMNGKP
Sbjct: 41  GLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP 100

Query: 183 LHGRIICVELARPRTPFGSGRG-VPIARGPPEPPTEQ 290
           L+GR+I V  A+P T   S RG +PIARGPPE  T++
Sbjct: 101 LNGRVIFVNYAKPTT---SSRGAIPIARGPPEEKTDK 134


>ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
           gi|223529933|gb|EEF31861.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 127

 Score =  127 bits (319), Expect = 1e-27
 Identities = 63/92 (68%), Positives = 75/92 (81%)
 Frame = +3

Query: 3   GLSFYTTEKALLDAFSQYGQVVEATVTMDKVSSRSKGFGFVTYASQDEAEKAITEMNGKP 182
           GLSFYTT+K L +AFSQYGQVVEAT+  D+V  RSKGFGFVT+AS+DEA  A++EMNGK 
Sbjct: 37  GLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEMNGKT 96

Query: 183 LHGRIICVELARPRTPFGSGRGVPIARGPPEP 278
           L+GR+I V+ A+PRT   S   VPIARGPPEP
Sbjct: 97  LNGRVIYVDYAKPRT--DSRNEVPIARGPPEP 126


Top