BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00005719
         (5255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1897   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1889   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1791   0.0  
ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I sub...  1713   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1701   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1897 bits (4914), Expect = 0.0
 Identities = 1010/1708 (59%), Positives = 1228/1708 (71%), Gaps = 41/1708 (2%)
 Frame = -1

Query: 5114 TTTEGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMDEQA 4935
            T T G +E VE V+FSF TDEEVRK+S  KIT+P++LDSV RP+PGGLYDP LG +DE  
Sbjct: 52   TATSGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENT 111

Query: 4934 PCKSCGQQSFDCPGHCGHIDLVSPVYNPLLFDMLYTLLRRTCFFCRHFRVGKEEVDICTS 4755
            PC+SCGQ+SF CPGHCGHIDLVS VYNPLLF++L+ LL++TCFFC HF+     V    S
Sbjct: 112  PCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVS 171

Query: 4754 KLKKIARGDVSGAKDFVHNSDSKGIDLEDGDGSHVS-SSTLFSGSQSDSPEQTRQEFWTS 4578
            +L+ I++GDV GAK+    S S+    ED DGSHVS SST+ S ++ +     +Q+ WTS
Sbjct: 172  QLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTS 231

Query: 4577 VQYIEAKSVLKEFLGNTTKTCKCCEAKNPKISKPTFGSFRM-DMSVADAEKNYIRGYQLG 4401
            +Q IEA SV+  FL    + CK C+AK+P+++KPTFG F M  +S A    N IRG +L 
Sbjct: 232  LQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKL- 290

Query: 4400 SNRYEEELQD-GEEDKTSEVINVNEQSE-DDRADTAGTNSFXXXXXXXXXXXXXXXXA-- 4233
                E  L    EE  +SEV NVN+     D  DT  T+S                    
Sbjct: 291  ----ERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKG 346

Query: 4232 ---PSDFNELKNNYSGSLLPSRVINIIKDLWENEAGLCTYICDIQQERLNGSSKSTSYSM 4062
               P +F + K+ +SG LLPS V +I++ LWENEA LC++I DI QERL  S     YSM
Sbjct: 347  AQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSM 406

Query: 4061 FFIEALLVPPTKFRPAAVAGDSVMENPQTVLLGKVLQSNIALGNAHINKFEGSKIADRWR 3882
            FF+E +LVPP KFRP +    SVME+PQTVLLGKVLQ+NIALGNAH N  E SKI  RW 
Sbjct: 407  FFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 466

Query: 3881 DLQQSVNVLFDSKSATSQNLKNVNSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 3702
            DLQQS+NVLFD K+A  Q  ++  SGICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPY
Sbjct: 467  DLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPY 526

Query: 3701 LAVNEIGVPPYFALRLTYPERVTHWNVVKLREAIINGSDIHPGATHYVDKVSTVRLPQNK 3522
            LAVNEIG+PPYFALRLTYPE+VT WNVVKLR+AIING +IHPGATHYVDK+STV+L  NK
Sbjct: 527  LAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNK 586

Query: 3521 KMRISISRKLPSSRGMAIQSKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3342
            KMRISISRKLPSSRG+  Q  +SSD EFEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHV
Sbjct: 587  KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 646

Query: 3341 VRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGD 3162
            VRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNANNQYIVP+RGD
Sbjct: 647  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGD 706

Query: 3161 TVRGLIQDHIVSSVLLTMKDTFLNREEFNQLLYASGIFAGGNSRRG----KISIADKGCF 2994
             +RGLIQDHIVS+VLLT KDTFL RE++NQLLY+SG+ +G  S  G    K+S+ D    
Sbjct: 707  PIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDE 766

Query: 2993 VDPVLPAVWKPKPFWTGKQVITAILNHLTRGCTPCIVDNKVKIPEQYFQGKEVKQDKSKT 2814
            + P+LPA+WKP+P W+GKQVITA+LNH+TRG  P   +   KIP +YF G E+ + KS  
Sbjct: 767  MQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYF-GSEIDEKKSGK 825

Query: 2813 NK-----RRKKELAEVGLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDV 2649
             K     RRK++  E   K+  E +LLI KNELV GVIDKAQF KYGLVH VQELYGS+ 
Sbjct: 826  GKDPGSDRRKEKRIE---KKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNT 882

Query: 2648 AGLLLGAFSRLFTNFLQFHGFTCGLDDLMVSPDCDKEMKEELE-GEDVGEKVHRKFVNLE 2472
            AG+LL   SRLFT FLQ HGFTCG+DDL++SP+ D   K EL+  E++GE VH KF+   
Sbjct: 883  AGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSN 942

Query: 2471 NQKTGTRELQLETEKIIRSNGVTATASLDNLMQTELRDKGSMISKKWLPKGLLKPFPQNC 2292
            + K    +LQ+E EKII SNG  A   LD +M+ EL +  S ++K  L KGL+KPFP+NC
Sbjct: 943  HGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNC 1002

Query: 2291 ISLMTISGAKGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGYIID 2112
            +SLMT +GAKGS+VNF QIS  LGQQ+LEGKRVPRMVSGKTLP FPPWD  +RAGG+I D
Sbjct: 1003 LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 1062

Query: 2111 RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGS 1932
            RFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YDYTVRD+DGS
Sbjct: 1063 RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1122

Query: 1931 IVQFYYGEDGVDVHQTSFLNNVEVLRANQEIVCQKLSQPLEFNSYIQELPQGIQDKVQSY 1752
            IVQF YG+DGVDVHQTSF+   E L  N+E+VC+K  Q  +FN YIQ+LP+ ++ K + +
Sbjct: 1123 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1182

Query: 1751 RQKGTEENRD--------DMLMLVRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFH 1596
             +   EE +D        D + LV+QKY+SSLAQPGEPVGV+A QSVGEPSTQMTLNTFH
Sbjct: 1183 IEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1242

Query: 1595 LAGRGEMNVTLGIPRLQEILMTAAANIKTPIITCPLLEGRSMKDAERLVEKVKKLTVAEL 1416
            LAGRGE+NVTLGIPRLQEILMTAA +IKTPI+TCPL  GRS  DAERL  K+KK+TVA++
Sbjct: 1243 LAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADI 1302

Query: 1415 MQSIEVSKLPLVIHNNRPCRIYKLMVKLKQP------RHVSLHNCQETLRNVFLRALEDA 1254
             +S+EVS +P  + +++ C IYKL +KL +P        +SL +C+ETL  VF+R LEDA
Sbjct: 1303 TESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDA 1362

Query: 1253 IERHVALLSRINGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE-TSEDLGS 1077
            I+ H+ LLS+I+GI                                    D+  +EDLG 
Sbjct: 1363 IQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGL 1422

Query: 1076 EYNKRKRQTTDSVEYEDG----SEGEASSELENEANQANAGTEVGTDDESDKEHPAEEQG 909
            +  KRK+Q +D ++Y D      EGE S+ L  E +      E+  ++E     P +E  
Sbjct: 1423 DAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDS 1482

Query: 908  NGEHPAEEQEDAD-KVNPKSSEDF--VERKFDRAIFVEVKDLNLEVHFRFTNEPEILLAE 738
                 ++  ++   K   K  + F  +++ FDRAI V+ K    EVHFRFTNEP ILLA+
Sbjct: 1483 KVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQ 1542

Query: 737  VAQKTAKKVYIKGSGKLDQCQPVKYSVNVKQVCWNQKHPEISXXXXXXXXXXXXXXEGCL 558
            +AQK A KVYI+ SGK+D CQ +    N  QV +  + P+                   L
Sbjct: 1543 IAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPKKRENIPGEEKKK-------L 1593

Query: 557  PCALQASGVELPAFWDMEDDLDMDHVYSNNIYIMLNTYGVEAARTGIILEMKNVFGSYGV 378
            P ALQ +GV+  AFW M+D+LD+ +VYSNN++ MLNT+GVEAAR  II E+ NVF +YGV
Sbjct: 1594 P-ALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGV 1652

Query: 377  EIDYRHLSLIADYMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEAASHGMRDNL 198
            +++ RHLSLIAD+MTHSGGYRPM+R G I+ESVSPF KM+FETASKFIVEAASHGM DNL
Sbjct: 1653 KVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNL 1712

Query: 197  ETPTARICLGLPVKVGTGSMELMQKLNI 114
            E+ +ARICLGLPVK+GTG  +LMQK+ I
Sbjct: 1713 ESASARICLGLPVKMGTGCFDLMQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1889 bits (4894), Expect = 0.0
 Identities = 1002/1701 (58%), Positives = 1223/1701 (71%), Gaps = 37/1701 (2%)
 Frame = -1

Query: 5105 EGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMDEQAPCK 4926
            EG +E VE V+FSF TDEEVRK+S  KIT+P++LDSV RP+PGGLYDP LG +DE  PC+
Sbjct: 6    EGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQ 65

Query: 4925 SCGQQSFDCPGHCGHIDLVSPVYNPLLFDMLYTLLRRTCFFCRHFRVGKEEVDICTSKLK 4746
            SCGQ+SF CPGHCGHIDLVS VYNPLLF++L+ LL++TCFFC HF+     V    S+L+
Sbjct: 66   SCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLE 125

Query: 4745 KIARGDVSGAKDFVHNSDSKGIDLEDGDGSHVS-SSTLFSGSQSDSPEQTRQEFWTSVQY 4569
             I++GDV GAK+    S S+    ED DGSHVS SST+ S ++ +     +Q+ WTS+Q 
Sbjct: 126  LISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQC 185

Query: 4568 IEAKSVLKEFLGNTTKTCKCCEAKNPKISKPTFGSFRM-DMSVADAEKNYIRGYQLGSNR 4392
            IEA SV+  FL    + CK C+AK+P+++KPTFG F M  +S A    N IRG +L    
Sbjct: 186  IEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKL---- 241

Query: 4391 YEEELQDGEEDKTSEVINVNEQSEDD---RADTAGTNSFXXXXXXXXXXXXXXXXAPSDF 4221
             E  L   + D+T   I   +  +D    R +  G  +                  P +F
Sbjct: 242  -ERPLNGVDTDETHSSIAPTDGIQDTVTKRLERKGAQA------------------PIEF 282

Query: 4220 NELKNNYSGSLLPSRVINIIKDLWENEAGLCTYICDIQQERLNGSSKSTSYSMFFIEALL 4041
             + K+ +SG LLPS V +I++ LWENEA LC++I DI QERL  S     YSMFF+E +L
Sbjct: 283  IKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETIL 342

Query: 4040 VPPTKFRPAAVAGDSVMENPQTVLLGKVLQSNIALGNAHINKFEGSKIADRWRDLQQSVN 3861
            VPP KFRP +    SVME+PQTVLLGKVLQ+NIALGNAH N  E SKI  RW DLQQS+N
Sbjct: 343  VPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSIN 402

Query: 3860 VLFDSKSATSQNLKNVNSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG 3681
            VLFD K+A  Q  ++  SGICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVNEIG
Sbjct: 403  VLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIG 462

Query: 3680 VPPYFALRLTYPERVTHWNVVKLREAIINGSDIHPGATHYVDKVSTVRLPQNKKMRISIS 3501
            +PPYFALRLTYPE+VT WNVVKLR+AIING +IHPGATHYVDK+STV+L  NKKMRISIS
Sbjct: 463  IPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISIS 522

Query: 3500 RKLPSSRGMAIQSKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3321
            RKLPSSRG+  Q  +SSD EFEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 523  RKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 582

Query: 3320 KTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGDTVRGLIQ 3141
            KTLRMHYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVNANNQYIVP+RGD +RGLIQ
Sbjct: 583  KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQ 642

Query: 3140 DHIVSSVLLTMKDTFLNREEFNQLLYASGIFAGGNSRRG----KISIADKGCFVDPVLPA 2973
            DHIVS+VLLT KDTFL RE++NQLLY+SG+ +G  S  G    K+S+ D    + P+LPA
Sbjct: 643  DHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPA 702

Query: 2972 VWKPKPFWTGKQVITAILNHLTRGCTPCIVDNKVKIPEQYFQGKEVKQDKSKTNK----- 2808
            +WKP+P W+GKQVITA+LNH+TRG  P   +   KIP +YF G E+ + KS   K     
Sbjct: 703  IWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYF-GSEIDEKKSGKGKDPGSD 761

Query: 2807 RRKKELAEVGLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDVAGLLLGA 2628
            RRK++  E   K+  E +LLI KNELV GVIDKAQF KYGLVH VQELYGS+ AG+LL  
Sbjct: 762  RRKEKRIE---KKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSV 818

Query: 2627 FSRLFTNFLQFHGFTCGLDDLMVSPDCDKEMKEELE-GEDVGEKVHRKFVNLENQKTGTR 2451
             SRLFT FLQ HGFTCG+DDL++SP+ D   K EL+  E++GE VH KF+   + K    
Sbjct: 819  LSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPV 878

Query: 2450 ELQLETEKIIRSNGVTATASLDNLMQTELRDKGSMISKKWLPKGLLKPFPQNCISLMTIS 2271
            +LQ+E EKII SNG  A   LD +M+ EL +  S ++K  L KGL+KPFP+NC+SLMT +
Sbjct: 879  KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTT 938

Query: 2270 GAKGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGYIIDRFLTGLR 2091
            GAKGS+VNF QIS  LGQQ+LEGKRVPRMVSGKTLP FPPWD  +RAGG+I DRFLTGL 
Sbjct: 939  GAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLH 998

Query: 2090 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYG 1911
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YDYTVRD+DGSIVQF YG
Sbjct: 999  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYG 1058

Query: 1910 EDGVDVHQTSFLNNVEVLRANQEIVCQKLSQPLEFNSYIQELPQGIQDKVQSYRQKGTEE 1731
            +DGVDVHQTSF+   E L  N+E+VC+K  Q  +FN YIQ+LP+ ++ K + + +   EE
Sbjct: 1059 DDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFMEE 1118

Query: 1730 NRD--------DMLMLVRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGEM 1575
             +D        D + LV+QKY+SSLAQPGEPVGV+A QSVGEPSTQMTLNTFHLAGRGE+
Sbjct: 1119 RQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEV 1178

Query: 1574 NVTLGIPRLQEILMTAAANIKTPIITCPLLEGRSMKDAERLVEKVKKLTVAELMQSIEVS 1395
            NVTLGIPRLQEILMTAA +IKTPI+TCPL  GRS  DAERL  K+KK+TVA++ +S+EVS
Sbjct: 1179 NVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVS 1238

Query: 1394 KLPLVIHNNRPCRIYKLMVKLKQP------RHVSLHNCQETLRNVFLRALEDAIERHVAL 1233
             +P  + +++ C IYKL +KL +P        +SL +C+ETL  VF+R LEDAI+ H+ L
Sbjct: 1239 IVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLL 1298

Query: 1232 LSRINGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE-TSEDLGSEYNKRKR 1056
            LS+I+GI                                    D+  +EDLG +  KRK+
Sbjct: 1299 LSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQ 1358

Query: 1055 QTTDSVEYEDG----SEGEASSELENEANQANAGTEVGTDDESDKEHPAEEQGNGEHPAE 888
            Q +D ++Y D      EGE S+ L  E +      E+  ++E     P +E       ++
Sbjct: 1359 QASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSK 1418

Query: 887  EQEDAD-KVNPKSSEDF--VERKFDRAIFVEVKDLNLEVHFRFTNEPEILLAEVAQKTAK 717
              ++   K   K  + F  +++ FDRAI V+ K    EVHFRFTNEP ILLA++AQK A 
Sbjct: 1419 SSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAAN 1478

Query: 716  KVYIKGSGKLDQCQPVKYSVNVKQVCWNQKHPEISXXXXXXXXXXXXXXEGCLPCALQAS 537
            KVYI+ SGK+D CQ +    N  QV +  + P+                   LP ALQ +
Sbjct: 1479 KVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPKKRENIPGEEKKK-------LP-ALQTA 1528

Query: 536  GVELPAFWDMEDDLDMDHVYSNNIYIMLNTYGVEAARTGIILEMKNVFGSYGVEIDYRHL 357
            GV+  AFW M+D+LD+ +VYSNN++ MLNT+GVEAAR  II E+ NVF +YGV+++ RHL
Sbjct: 1529 GVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHL 1588

Query: 356  SLIADYMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEAASHGMRDNLETPTARI 177
            SLIAD+MTHSGGYRPM+R G I+ESVSPF KM+FETASKFIVEAASHGM DNLE+ +ARI
Sbjct: 1589 SLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARI 1648

Query: 176  CLGLPVKVGTGSMELMQKLNI 114
            CLGLPVK+GTG  +LMQK+ I
Sbjct: 1649 CLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1791 bits (4638), Expect = 0.0
 Identities = 963/1717 (56%), Positives = 1192/1717 (69%), Gaps = 50/1717 (2%)
 Frame = -1

Query: 5114 TTTEGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMDEQA 4935
            + ++GA+E ++ + FSF+TDEEVRKHS +KITNP LLD V RP+PGGLYDP LGP+ E+ 
Sbjct: 6    SVSKGATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERT 65

Query: 4934 PCKSCGQQSFDCPGHCGHIDLVSPVYNPLLFDMLYTLLRRTCFFCRHFRVGKEEVDICTS 4755
             CK+CGQ+S +CPGHCGHIDLVSPVYNPLLF+ L+ LL+RTCF C HFR+ + +V+ C  
Sbjct: 66   ICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIK 125

Query: 4754 KLKKIARGDVSGAKDFVHNSDSKGIDLEDGDGSHVSSSTLFSGSQSDSPEQTRQEFWTSV 4575
            +L+ I +GD+ GAK     S S+ +  E+ D SH S  T+ SG Q +  E TRQ+ WTS+
Sbjct: 126  QLELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSL 185

Query: 4574 QYIEAKSVLKEFLGNTTKTCKCCEAKNPKISKPTFGSFRMD-MSVADAEKNYIRGYQLGS 4398
            Q+ EA SVL  FL    K CK CE+ NP I+KPTFG F    MS A    N I G+QLG 
Sbjct: 186  QFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGG 245

Query: 4397 NRYEEELQDGEEDKTSEVINVNEQSEDDRADTAGTNSFXXXXXXXXXXXXXXXXAPSDFN 4218
                  L   E + T++V +  E  +      +GT                      +F 
Sbjct: 246  ------LLGSEIEGTTDVEDAAEPGDQH----SGTKKHKKKERKEVL----------EFT 285

Query: 4217 ELKNNYSGSLLPSRVINIIKDLWENEAGLCTYICDIQQERLNGSSKSTSYSMFFIEALLV 4038
              K+ +S  LLPS V   ++ LW+NEA +C++I D+QQ+      +    +MFF+E +LV
Sbjct: 286  RQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLETILV 343

Query: 4037 PPTKFRPAAVAGDSVMENPQTVLLGKVLQSNIALGNAHINKFEGSKIADRWRDLQQSVNV 3858
            PP KFRP    GDSVME+PQTVLL KVLQSNI+LG+AHINK E SKI  RW DLQQS+N 
Sbjct: 344  PPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHSKIVRRWLDLQQSINT 402

Query: 3857 LFDSKSATSQNLKNVNSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGV 3678
            LFDSK+A     +    GICQLLEKKEG+FRQKMMGKRVNYACRSVISPDPY+ VNEIG+
Sbjct: 403  LFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGI 462

Query: 3677 PPYFALRLTYPERVTHWNVVKLREAIINGSDIHPGATHYVDKVSTVRLPQNKKMRISISR 3498
            PP FA++LTYPERVT WN+ KLR A+INGS+ HPGATHYVDK+S  +LP  +K RISISR
Sbjct: 463  PPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISR 522

Query: 3497 KLPSSRGMAIQSKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEK 3318
            KLPSSRG   Q+ K S+ EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEK
Sbjct: 523  KLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 582

Query: 3317 TLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGDTVRGLIQ 3141
            TLRMHYANCS +YNADFDGDEMNVH PQDE+SRAEAYNIVNANNQ++ P+ G+ +RGLIQ
Sbjct: 583  TLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQ 642

Query: 3140 DHIVSSVLLTMKDTFLNREEFNQLLYASGI-FAGGNSRRG----KISIADKGCFVDPVLP 2976
            DHIVS+VLLT KDTFL+++EFNQLLY+SG+   G NS  G    K+  +     +  + P
Sbjct: 643  DHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPP 702

Query: 2975 AVWKPKPFWTGKQVITAILNHLTRGCTPCIVDNKVKIPEQYFQGKEVKQDKSKTNKRRKK 2796
            A+WKPKP WTGKQVITAILNH+T    P  V+   KIP  +F+ +  +    +  K  K 
Sbjct: 703  AIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKD 762

Query: 2795 ELAEVGLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDVAGLLLGAFSRL 2616
              AE   KE DE ++L++KNELV GVIDK QFG+YGLVHTV EL GS  AG+LL   SRL
Sbjct: 763  APAE---KEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRL 819

Query: 2615 FTNFLQFHGFTCGLDDLMVSPDCDKEMKEELEG-EDVGEKVHRKFVNLENQ--KTGTREL 2445
            FT +LQ HGFTCG+DDL++  + D+E K++LE  E  GE VHR F+ ++++  K     +
Sbjct: 820  FTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAM 879

Query: 2444 QLETEKIIRSNGVTATASLDNLMQTELRDK-GSMISKKWLPKGLLKPFPQNCISLMTISG 2268
            QL  EK IRS+G +A A LD  M  EL  K  S +    L  GLLKP  +NCISLMT SG
Sbjct: 880  QLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSG 939

Query: 2267 AKGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGYIIDRFLTGLRP 2088
            AKGS VNFQQIS  LGQQELEGKRVPRMVSGKTLP F PWD+ +R+GGYI DRFLTGLRP
Sbjct: 940  AKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRP 999

Query: 2087 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGE 1908
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS+VQFYYGE
Sbjct: 1000 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGE 1059

Query: 1907 DGVDVHQTSFLNNVEVLRANQEIVCQKLSQPL-EFNSYIQELPQGIQDKVQSY------- 1752
            DGVDVHQTSF+   + L  NQ+++ ++    L  FNSYI ELP+ +++K   +       
Sbjct: 1060 DGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDFSIM 1119

Query: 1751 -RQKGTEENRDDMLMLVRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGEM 1575
             R       R+D+  L++QK+L SLAQPGEPVGV+A QSVGEPSTQMTLNTFHLAGRGEM
Sbjct: 1120 GRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1179

Query: 1574 NVTLGIPRLQEILMTAAANIKTPIITCPLLEGRSMKDAERLVEKVKKLTVAELMQSIEVS 1395
            NVTLGIPRLQEILMTA+ +IKTPI+TCPL EGR+ +DA+ L +K++K+TVA++++S+EVS
Sbjct: 1180 NVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVESMEVS 1239

Query: 1394 KLPLVIHNNRPCRIYKLMVKLKQPRH------VSLHNCQETLRNVFLRALEDAIERHVAL 1233
             +P  I +   CRIYKL +KL +P H      +S+ + +ETL  VFLR LEDAI+ H+ L
Sbjct: 1240 VVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFL 1299

Query: 1232 LSRINGI-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDETSEDLGSEYNKRKR 1056
            LSRI+GI                                      E ++DLG +  KRK 
Sbjct: 1300 LSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKL 1359

Query: 1055 QTTDSVEYEDG-----SEGEAS-----SELENEANQANAGTEVGTDDESDKE-------- 930
            Q TD ++Y+DG     +EGE++     S  E+E +Q +  TE+  D   D E        
Sbjct: 1360 QATDEMDYDDGFEEELNEGESTASEEESGFESEIDQGDNETEISNDVMLDNEASETLPLR 1419

Query: 929  ---HPAEEQGNGEHPAEEQEDAD-KVNPKSS-EDFVERKFDRAIFVEVKDLNLEVHFRFT 765
                P  ++   E P+  ++  D K  PK+  +  + + FDRAIFVE + ++ EVHF+FT
Sbjct: 1420 KPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDFDRAIFVEARKMHFEVHFKFT 1479

Query: 764  NEPEILLAEVAQKTAKKVYIKGSGKLDQCQPVKYSVNVKQVCWNQKHPEISXXXXXXXXX 585
            NEP ILLAE+AQKTAKKVYI+  GK++QC+         QV +  K P+           
Sbjct: 1480 NEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT--DCKESQVIYYGKDPKERVDLKPDVKE 1537

Query: 584  XXXXXEGCLPCALQASGVELPAFWDMEDDLDMDHVYSNNIYIMLNTYGVEAARTGIILEM 405
                       AL A+GV+   FW M+D LD+ ++YSNNI+ ML TYGVEAAR  II E+
Sbjct: 1538 KVP--------ALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREI 1589

Query: 404  KNVFGSYGVEIDYRHLSLIADYMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEA 225
             +VF SYG+ +  RHLSLIAD+MTH+GGYRPMSR G I+ES+SPF KMSFETASKFIVEA
Sbjct: 1590 NHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEA 1649

Query: 224  ASHGMRDNLETPTARICLGLPVKVGTGSMELMQKLNI 114
            A HG  DNLETP+ARICLGLPVK+GTGS +LMQKL I
Sbjct: 1650 ALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1653

 Score = 1713 bits (4437), Expect = 0.0
 Identities = 929/1708 (54%), Positives = 1168/1708 (68%), Gaps = 42/1708 (2%)
 Frame = -1

Query: 5111 TTEGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMDEQAP 4932
            TTEGA+  VE V FSF+TD+E+R+ S +KIT+PIL+D +  P+P GLYD  LGP D+++ 
Sbjct: 4    TTEGATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSL 63

Query: 4931 CKSCGQQSFDCPGHCGHIDLVSPVYNPLLFDMLYTLLRRTCFFCRHFRVGKEEVDICTSK 4752
            CKSCGQ S  CPGH GHI+LVSPVYNPL+F++L  +L+RTCF C HFR   +EVDI TS+
Sbjct: 64   CKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQ 123

Query: 4751 LKKIARGDVSGAKDFVHNSDSKGID-------LEDGDGSHVSSSTLFSGSQSDSPEQTRQ 4593
            L+ I +GD+  AK        K +D       +  GDG           SQ  S EQ  +
Sbjct: 124  LELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDE---------SQCYSAEQLGE 174

Query: 4592 EFWTSVQYIEAKSVLKEFLGNTTKTCKCCEAKNPKISKPTFGSFRMDMSVADAEK-NYIR 4416
              WTS+Q+ EA SVL++ L    K C+ C AKNPKISKPTFG F M++  AD  + + IR
Sbjct: 175  N-WTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIR 233

Query: 4415 GYQLGSNRYEEELQDGEEDKTSEVINVNEQSEDDRADTAGTNSFXXXXXXXXXXXXXXXX 4236
              +  +   +  L  G+     ++ +      D R     +                   
Sbjct: 234  SVESETTNDDISLGGGDTTDVEDITSAGTAKRDKRKKEKLSYKLAE-------------- 279

Query: 4235 APSDFNELKNNYSGSLLPSRVINIIKDLWENEAGLCTYICDIQQERLNGSSKSTSYSMFF 4056
                    +N  SGSLLPS+V  I++ LWENEA LC+YI DIQ +   G  K   +SMFF
Sbjct: 280  --------QNKLSGSLLPSQVKGILELLWENEARLCSYINDIQDQ---GFGKKAGHSMFF 328

Query: 4055 IEALLVPPTKFRPAAVAGDSVMENPQTVLLGKVLQSNIALGNAHINKFEGSKIADRWRDL 3876
            +E + VPP KFRP    GD+VME+PQTVLL KVLQ NI+LG+AH+NK + SK+  RW DL
Sbjct: 329  LENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDL 388

Query: 3875 QQSVNVLFDSKSATSQNLKNVNSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLA 3696
            QQSVN+LFD+K+A+ ++ ++V +GICQLLEKKEGIFRQKMMGKRVN+ACRSVISPDPYLA
Sbjct: 389  QQSVNMLFDNKTASGESKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLA 448

Query: 3695 VNEIGVPPYFALRLTYPERVTHWNVVKLREAIINGSDIHPGATHYVDKVSTVRLPQNKKM 3516
            VNEIG+PPYFALRL+YPERVT WNVVKLR AI+NG + HPGATHY DKVS V+LP   K+
Sbjct: 449  VNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKL 508

Query: 3515 RISISRKLPSSRGMAIQSKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 3336
                SRKLP+SRG+ +   K SD+EFEGKVVYRHL+DGD+VLVNRQPTLHKPSIMAH+VR
Sbjct: 509  LSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVR 568

Query: 3335 VLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGDTV 3156
            VLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAEAYNIVNANNQY+ PT GD +
Sbjct: 569  VLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPI 628

Query: 3155 RGLIQDHIVSSVLLTMKDTFLNREEFNQLLYASGI-------FAGGNSRRGKISIADKGC 2997
            R LIQDHIVS+ LLT KDTFL+ EEFNQLLY+SG+       F G + ++  IS ++   
Sbjct: 629  RALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEM 688

Query: 2996 FVDPVLPAVWKPKPFWTGKQVITAILNHLTRGCTPCIVDNKVKIPEQYFQGKEVKQDKSK 2817
            F+ P  PA+WKP+P WTGKQVI+A+L ++TRG  P   +   KIP  +F+  ++++ K  
Sbjct: 689  FLFP--PAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFK-TQIRKGKRY 745

Query: 2816 TNKRRKKELAEVGLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDVAGLL 2637
            T    KK+       + DE +LLI+KN+LV GV+DKAQFG YG++HTVQELYGS+VAG L
Sbjct: 746  TEDTSKKK------DKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNL 799

Query: 2636 LGAFSRLFTNFLQFHGFTCGLDDLMVSPDCDKEMKEELEG-EDVGEKVHRKFVNLEN-QK 2463
            L A SRLFT FLQ HGFTCG+DDLM++   D E   +L+  E +G+ VHR+F+ ++N   
Sbjct: 800  LSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDN 859

Query: 2462 TGTRELQLETEKIIRSNGVTATASLDNLMQTELRDK-GSMISKKWLPKGLLKPFPQNCIS 2286
                 LQL  EK IRSNG  A  +LD  M + L  +  S I KK L +G+LKP  +NCIS
Sbjct: 860  IDPVTLQLNIEKKIRSNG-EAALTLDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCIS 918

Query: 2285 LMTISGAKGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGYIIDRF 2106
            LMT SGAKGS VNFQQIS  LGQQELEGKRVPRMVSGKTLP FPPWD + RAGG+IIDRF
Sbjct: 919  LMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRF 978

Query: 2105 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIV 1926
            LT L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD+TVRDADGSI+
Sbjct: 979  LTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSII 1038

Query: 1925 QFYYGEDGVDVHQTSFLNNVEVLRANQEIVCQKLSQPLEFNS-YIQELPQGIQDKVQSY- 1752
            QF+YGEDGVDVHQTSF+     L  N+E+V     + L+ +S YI +LP+ ++ K + + 
Sbjct: 1039 QFHYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKFS 1098

Query: 1751 --RQKGTEENRDDMLMLVRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGE 1578
              R  G+ E + D L L+  KY+S LAQPGEPVGV+A QSVGEP+TQMTLNTFHLAGRGE
Sbjct: 1099 KQRNLGSME-QADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGE 1157

Query: 1577 MNVTLGIPRLQEILMTAAANIKTPIITCPLLEGRSMKDAERLVEKVKKLTVAELMQSIEV 1398
            MNVTLGIPRLQEILM AA +IKTP +TCPL   +SMKDA  L +K+KK+TVA++++S++V
Sbjct: 1158 MNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKITVADIIKSMKV 1217

Query: 1397 SKLPLVIHNNRPCRIYKLMVKLKQPRH------VSLHNCQETLRNVFLRALEDAIERHVA 1236
            S +P+ +   + C IYKL++KL + +       ++L + +ETLR  F+R LEDAI+ H+ 
Sbjct: 1218 SVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMT 1277

Query: 1235 LLSRINGI--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDETSEDLG 1080
            LLS+I+GI                                             E  EDLG
Sbjct: 1278 LLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLG 1337

Query: 1079 SEYNKRKRQTTDSVEYEDGSEGEA-SSELENEANQANAGTEVGTDDESDKEHPAEEQGNG 903
            S+  KRK Q TD V+YEDG E E    EL  E      G++V  ++  +    A      
Sbjct: 1338 SDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGDEDGSDVDANENYNNVTDANNSEGL 1397

Query: 902  EHPAEEQEDADKVN---PKSSEDFVERKFDRAIFVEVKDLNLEVHFRFTNEPEILLAEVA 732
            E P++ +   +K N    K   +   +K+DRAIFVE K  + E+HFRFT EP ILL ++A
Sbjct: 1398 EKPSKSKTIDEKQNLKREKKKSEPTTKKYDRAIFVEAKGKHFEIHFRFTGEPHILLTQIA 1457

Query: 731  QKTAKKVYIKGSGKLDQCQPV--KYSVNVKQVCWNQKHPEISXXXXXXXXXXXXXXEGCL 558
            Q+TAKKV I+  GK+ +C+ +  K S  +      +K  EIS                  
Sbjct: 1458 QRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGRKRIEISASEKEQIP---------- 1507

Query: 557  PCALQASGVELPAFWDMEDDLDMDHVYSNNIYIMLNTYGVEAARTGIILEMKNVFGSYGV 378
              ALQ SGV    FW++EDDLD+ ++YSNN++ MLN YGVEAAR  II E++NVF SYG+
Sbjct: 1508 --ALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGI 1565

Query: 377  EIDYRHLSLIADYMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEAASHGMRDNL 198
             ++ RHL+LIAD+MTH+G YRPM+R GSI++S SPF+KM FETA  FIVEAA HG  DNL
Sbjct: 1566 SVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQVDNL 1625

Query: 197  ETPTARICLGLPVKVGTGSMELMQKLNI 114
            ETP+ARICLGLPVK+GTG  +L+QKL I
Sbjct: 1626 ETPSARICLGLPVKMGTGCHDLIQKLEI 1653


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1701 bits (4404), Expect = 0.0
 Identities = 924/1709 (54%), Positives = 1165/1709 (68%), Gaps = 39/1709 (2%)
 Frame = -1

Query: 5123 MAQTTTEGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMD 4944
            MAQTT EGASE V+ V FSFMT+EEVRK SV+K+T PILLD +GRP+ GGLYDP +G +D
Sbjct: 1    MAQTT-EGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLD 59

Query: 4943 EQAPCKSCGQQSFDCPGHCGHIDLVSPVYNPLLFDMLYTLLRRTCFFCRHFRVGKEEVDI 4764
            E   CKSCGQ+ F CPGHCGHIDLVSPVYNPLLF +L+  LR TCF C HFR G+  V+ 
Sbjct: 60   ETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVEN 119

Query: 4763 CTSKLKKIARGDVSGAKDFVH---NSDSKGIDLEDGDGSHVSSSTLFSGSQSDSPEQTRQ 4593
            C + L+ I  G+++ AK+      NS S+            SS ++++  + +   +T  
Sbjct: 120  CKTLLELILDGEIAKAKELEEEWMNSKSRT----------KSSHSMYTYERKNGQPET-- 167

Query: 4592 EFWTSVQYIEAKSVLKEFLGNTTKTCKCCEAKNPKISKPTFGSFRMDMSVADAEKNYIRG 4413
              WTS+Q+ EA SV+ +FL      CK C AK+PKI+KPTFG F M           + G
Sbjct: 168  --WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHM---------KGLAG 216

Query: 4412 YQLGSNRYEEELQDGEEDKTSEVINVNEQSEDDRADTAGTNSFXXXXXXXXXXXXXXXXA 4233
             Q  +N            + S+ ++V+  +E       G +S                 +
Sbjct: 217  VQKRANAI----------RRSKPVSVSSGAE-------GVSSLEEETTTEATVEDFEDVS 259

Query: 4232 PSDFNELKNNYSGSLLPSRVINIIKDLWENEAGLCTYICDIQQERLNGSSKSTSYSMFFI 4053
            P  F + KN  SG LLPS V +I+K LW+NEA LC++I DI Q+   G      +SMFF+
Sbjct: 260  PEVFMQ-KNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQ---GHGNKAGHSMFFL 315

Query: 4052 EALLVPPTKFRPAAVAGDSVMENPQTVLLGKVLQSNIALGNAHINKFEGSKIADRWRDLQ 3873
            E++LVPP KFRP A  GDSVME+PQTVLL KVLQSNI+LGN H NK E SKI   W DLQ
Sbjct: 316  ESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQ 375

Query: 3872 QSVNVLFDSKSATSQNLKNVNSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAV 3693
            QS+N+LFDSKSA      + + GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAV
Sbjct: 376  QSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 435

Query: 3692 NEIGVPPYFALRLTYPERVTHWNVVKLREAIINGSDIHPGATHYVDKVSTVR--LPQNKK 3519
            NEIG+PPYFALRLTYPERVT WNV KLR AIING + HPGATHY+DK++TV+  L  ++K
Sbjct: 436  NEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRK 495

Query: 3518 MRISISRKLPSSRGMAIQSKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 3339
             RISISRKLPSSRG+ +  +   DYEFEGK+V RHLQDGDIVLVNRQPTLHKPSIMAHVV
Sbjct: 496  SRISISRKLPSSRGVVV-DQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVV 554

Query: 3338 RVLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGD 3162
            RVLKGEKT+RMHYANCS +YNADFDGDEMNVH PQDEISRAEAYNIVNANNQY+ PT G+
Sbjct: 555  RVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGE 614

Query: 3161 TVRGLIQDHIVSSVLLTMKDTFLNREEFNQLLYASGI-----FAGGNSRRGKISIADKGC 2997
             +R LIQDHI+S+VLLT KDTFLN +EF+QLLY+SGI      A       KI   D   
Sbjct: 615  PIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDA 674

Query: 2996 FVDPVLPAVWKPKPFWTGKQVITAILNHLTRGCTPCIVDNKVKIPEQYFQGKEVKQDKSK 2817
             + PVLPAVWKP+P WTGKQV+TA+L+H+T+G  P  V+  VKIP  +F+ +++  + SK
Sbjct: 675  EMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSK 734

Query: 2816 TNKRRKKELAEVGLKEVDETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGSDVAGLL 2637
              K+   ++ ++    +D+  LLI+KNELV GVIDKAQFG YGLVHTVQELYGS+ AGLL
Sbjct: 735  --KKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLL 792

Query: 2636 LGAFSRLFTNFLQFHGFTCGLDDLMVSPDCDKEMKEELE-GEDVGEKVHRKFVNL-ENQK 2463
            L   SRLFT FLQ HGFTCG+DDL++    DKE +++L+  E +GE+VH  F+ + + +K
Sbjct: 793  LSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEK 852

Query: 2462 TGTRELQLETEKIIRSNGVTATASLDNLMQTELRDK--GSMISKKWLPKGLLKPFPQNCI 2289
                 LQL  EK I  NG  A  SLD  M ++L ++   S + K  L +GLLKP  +NCI
Sbjct: 853  LDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCI 912

Query: 2288 SLMTISGAKGSSVNFQQISFLLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGYIIDR 2109
            SLMT SGAKG + NFQQIS  LGQQ+LEGKRVPRMVSGKTLP FPPWD+ SRAGG+I+DR
Sbjct: 913  SLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDR 972

Query: 2108 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSI 1929
            FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+ YD+TVRDADGS+
Sbjct: 973  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSV 1032

Query: 1928 VQFYYGEDGVDVHQTSFLNNVEVLRANQEIVCQKLSQPL-EFNSYIQELPQGIQDKVQSY 1752
            +QF YGEDGVDVH+T+F+   E L ANQ+++ +     L ++N +I ELP  +++K +  
Sbjct: 1033 IQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFI 1092

Query: 1751 RQKGTEEN------RDDMLMLVRQKYLSSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLA 1590
                +++       ++D + L+  KYLSSLAQPGEPVGV+A QS+GEPSTQMTLNTFH  
Sbjct: 1093 YNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHV 1152

Query: 1589 GRGEMNVTLGIPRLQEILMTAAANIKTPIITCPLLEGRSMKDAERLVEKVKKLTVAELMQ 1410
            GRGEMNVTLGI RLQEILMTA+ +IKTPI+TCPL EG SM  A+ L  K+KK+TVA++++
Sbjct: 1153 GRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIE 1212

Query: 1409 SIEVSKLPLVIHNNRPCRIYKLMVKL------KQPRHVSLHNCQETLRNVFLRALEDAIE 1248
            S+ V+ +P        C IYKL +         Q  H+S  + + TL  VFL  LE  IE
Sbjct: 1213 SMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIE 1272

Query: 1247 RHVALLSRINGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDETSEDLGSEYN 1068
            R + LLS+INGI                                     + +EDLGS+  
Sbjct: 1273 REMVLLSKINGI-KNFVPDSQSKGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLGSDMK 1331

Query: 1067 KRKRQTTDSVEYEDGSEG-----EASSELENEANQANAGTEVGTD------DESDKEHPA 921
            K+K Q  D ++YED SE      E+S+  E+E +Q +       D      D + +  P 
Sbjct: 1332 KQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPE 1391

Query: 920  EEQGNGEHPAEEQEDADKVNPKSSEDFVERKFDRAIFVEVKDLNLEVHFRFTNEPEILLA 741
                +     E+  +  K   K   + V ++ DR+IFVE K+ + EVHF+FTNEP  LL+
Sbjct: 1392 IVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLS 1451

Query: 740  EVAQKTAKKVYIKGSGKLDQCQPVKYSVNVKQVCWNQKHPEISXXXXXXXXXXXXXXEGC 561
            ++ Q+ A+KV I+ SGK+ QCQ +  +    QV ++  + +                   
Sbjct: 1452 QIVQRAAQKVSIQRSGKIIQCQQI--TCKEGQVIYHGNNLKERKNLKPEEKEKIP----- 1504

Query: 560  LPCALQASGVELPAFWDMEDDLDMDHVYSNNIYIMLNTYGVEAARTGIILEMKNVFGSYG 381
               ALQ SGV+    W+M+D+LD+ ++YSN+I+ ML TYGVEAAR  II E++N+F SYG
Sbjct: 1505 ---ALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYG 1561

Query: 380  VEIDYRHLSLIADYMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEAASHGMRDN 201
            + ++ RHLSL+ADYMTHSGGYRPMSR G IS+S+SPF +M+FETA KFIV+AA HG  DN
Sbjct: 1562 ISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDN 1621

Query: 200  LETPTARICLGLPVKVGTGSMELMQKLNI 114
            LETP++RICLGLPVK+GTGS +LMQK+ +
Sbjct: 1622 LETPSSRICLGLPVKMGTGSFDLMQKIEV 1650