BLASTX nr result
ID: Atractylodes21_contig00004403
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00004403
(3748 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 1721 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 1708 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 1702 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 1700 0.0
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 1695 0.0
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 1721 bits (4458), Expect = 0.0
Identities = 859/935 (91%), Positives = 877/935 (93%)
Frame = -3
Query: 3626 EEEYDQAYNDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 3447
EEEYD DEEE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 6 EEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 65
Query: 3446 IRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 3267
IRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 66 IRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 125
Query: 3266 YVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYD 3087
YVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYD
Sbjct: 126 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 185
Query: 3086 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 2907
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM
Sbjct: 186 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 245
Query: 2906 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 2727
LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL
Sbjct: 246 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 305
Query: 2726 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGVGEYCETKK 2547
RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGVGEYCETKK
Sbjct: 306 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 365
Query: 2546 AYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 2367
AYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK
Sbjct: 366 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 425
Query: 2366 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 2187
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 426 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 485
Query: 2186 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 2007
RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL
Sbjct: 486 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 545
Query: 2006 EFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXXXVNTEVGV 1827
EFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM VNTEVGV
Sbjct: 546 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGV 605
Query: 1826 VRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXRETPEDGGWHDLVANGFX 1647
VRDIRLKELRIYTDYGRCSRPLFIVE RETPEDGGWHDLVA GF
Sbjct: 606 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFI 665
Query: 1646 XXXXXXXXXXXXXXXXINDLVNARSNPDESYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 1467
INDLV+AR NP+E+YS+TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 666 EYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 725
Query: 1466 SPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1287
SPRNTYQSAMGKQAMGIYVTN+QFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 726 SPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 785
Query: 1286 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 1107
IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM
Sbjct: 786 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 845
Query: 1106 GMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTSLRHSE 927
GMRHGSYDKLDDDGLAPPGTRV GEDV+IGKTTPIAQD+AQG A+RYTRRDHSTSLRHSE
Sbjct: 846 GMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSE 905
Query: 926 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 822
TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 940
Score = 297 bits (760), Expect(2) = e-103
Identities = 141/144 (97%), Positives = 143/144 (99%)
Frame = -2
Query: 699 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM 520
NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETM
Sbjct: 973 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032
Query: 519 YNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 340
YNGHTGRRL +MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092
Query: 339 MERDCMIAHGAAHFLKERLFDQSD 268
MERDCMIAHGAAHFLKERLFDQSD
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSD 1116
Score = 109 bits (272), Expect(2) = e-103
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = -3
Query: 161 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQ 3
AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKDVKQ
Sbjct: 1130 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQ 1182
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 1708 bits (4423), Expect = 0.0
Identities = 852/940 (90%), Positives = 879/940 (93%), Gaps = 2/940 (0%)
Frame = -3
Query: 3635 MDLEEEYDQAYN--DEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 3462
MD+E+EY+ YN D+EE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 3461 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3282
SADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3281 YSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLTELG 3102
YSAPLYVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3101 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 2922
ECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPPST
Sbjct: 181 ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPST 240
Query: 2921 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 2742
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ 300
Query: 2741 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGVGEY 2562
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT+EKRIKYA++ILQKEMLPHVGVGEY
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY 360
Query: 2561 CETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2382
CETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2381 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2202
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2201 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2022
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2021 AYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXXXVN 1842
AYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM VN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN 600
Query: 1841 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXRETPEDGGWHDLV 1662
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE RE+P++GGWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV 660
Query: 1661 ANGFXXXXXXXXXXXXXXXXXINDLVNARSNPDESYSDTYTHCEIHPSLILGVCASIIPF 1482
A G+ INDLV AR NP ++YSDTYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF 720
Query: 1481 PDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1302
PDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1301 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 1122
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 781 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1121 RANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTS 942
RA+TMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+QDDAQGQASRYTR+DHSTS
Sbjct: 841 RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS 900
Query: 941 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 822
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 901 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 940
Score = 298 bits (763), Expect(2) = e-103
Identities = 142/144 (98%), Positives = 143/144 (99%)
Frame = -2
Query: 699 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM 520
NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETM
Sbjct: 973 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1032
Query: 519 YNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 340
YNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1033 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1092
Query: 339 MERDCMIAHGAAHFLKERLFDQSD 268
MERDCMIAHGAAHFLKERLFDQSD
Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSD 1116
Score = 108 bits (270), Expect(2) = e-103
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = -3
Query: 161 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 6
AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK
Sbjct: 1130 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 1181
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 1702 bits (4407), Expect = 0.0
Identities = 854/943 (90%), Positives = 878/943 (93%), Gaps = 5/943 (0%)
Frame = -3
Query: 3635 MDLEEEYDQA----YNDEEED-ITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEI 3471
M+ ++EYDQ Y DE+ED ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 3470 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3291
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 3290 NLTYSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLT 3111
NLTYSAPLYVDV+KR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLT
Sbjct: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 3110 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 2931
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 2930 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 2751
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 2750 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGV 2571
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGV
Sbjct: 301 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 2570 GEYCETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2391
GEYCETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 2390 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2211
DVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 2210 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2031
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 2030 GSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXX 1851
GSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDPDM
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV 600
Query: 1850 XVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXRETPEDGGWH 1671
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE RE+ E+GGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWH 660
Query: 1670 DLVANGFXXXXXXXXXXXXXXXXXINDLVNARSNPDESYSDTYTHCEIHPSLILGVCASI 1491
DLVA GF I+DLV AR NP+E+YSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASI 720
Query: 1490 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1311
IPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 1310 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1131
QLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 1130 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDH 951
RPDRANTMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPIAQ++AQGQ++RYTRRDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDH 900
Query: 950 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 822
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
Score = 298 bits (763), Expect(2) = e-103
Identities = 142/144 (98%), Positives = 143/144 (99%)
Frame = -2
Query: 699 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM 520
NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETM
Sbjct: 976 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
Query: 519 YNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 340
YNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
Query: 339 MERDCMIAHGAAHFLKERLFDQSD 268
MERDCMIAHGAAHFLKERLFDQSD
Sbjct: 1096 MERDCMIAHGAAHFLKERLFDQSD 1119
Score = 108 bits (270), Expect(2) = e-103
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = -3
Query: 161 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 6
AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK
Sbjct: 1133 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 1184
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 1700 bits (4402), Expect = 0.0
Identities = 852/943 (90%), Positives = 877/943 (93%), Gaps = 5/943 (0%)
Frame = -3
Query: 3635 MDLEEE--YDQAY---NDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEI 3471
MDLEEE YD+ D+EE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLEEEQEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 3470 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3291
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 3290 NLTYSAPLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLT 3111
NLTYSAPLYVDVSKR IKKGHDGEEVTE QDF KVFIGKVPIMLRSSYCTL+QNSEKDLT
Sbjct: 121 NLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 3110 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 2931
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 2930 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 2751
PSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 2750 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGV 2571
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA++ILQKEMLPHVGV
Sbjct: 301 YTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 2570 GEYCETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2391
GEYCETKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 2390 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2211
DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 2210 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2031
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 2030 GSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXX 1851
GSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNG W+GIHRDPDM
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRV 600
Query: 1850 XVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXRETPEDGGWH 1671
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ RE+PEDGGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWH 660
Query: 1670 DLVANGFXXXXXXXXXXXXXXXXXINDLVNARSNPDESYSDTYTHCEIHPSLILGVCASI 1491
DLV+ GF INDLV AR NP+++YSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASI 720
Query: 1490 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1311
IPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 1310 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1131
QLPAGINAIV+I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 1130 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDH 951
RPDRANTMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+Q++AQGQA RYTRRDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH 900
Query: 950 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 822
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
Score = 298 bits (763), Expect(2) = e-102
Identities = 142/144 (98%), Positives = 143/144 (99%)
Frame = -2
Query: 699 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM 520
NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETM
Sbjct: 976 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
Query: 519 YNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 340
YNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1036 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
Query: 339 MERDCMIAHGAAHFLKERLFDQSD 268
MERDCMIAHGAAHFLKERLFDQSD
Sbjct: 1096 MERDCMIAHGAAHFLKERLFDQSD 1119
Score = 104 bits (260), Expect(2) = e-102
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -3
Query: 161 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 6
AIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLTK+VK
Sbjct: 1133 AIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVK 1184
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 1695 bits (4390), Expect = 0.0
Identities = 845/938 (90%), Positives = 875/938 (93%)
Frame = -3
Query: 3635 MDLEEEYDQAYNDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 3456
M+ +++ DQA D+EE+ITQEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
Sbjct: 11 MNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 70
Query: 3455 DIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 3276
DIEIRPESQHNPGHQ D AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
Sbjct: 71 DIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 130
Query: 3275 APLYVDVSKRAIKKGHDGEEVTETQDFAKVFIGKVPIMLRSSYCTLFQNSEKDLTELGEC 3096
APLYVDVSKR IKKGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGEC
Sbjct: 131 APLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 190
Query: 3095 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 2916
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPSTMF
Sbjct: 191 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMF 250
Query: 2915 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMM 2736
VRMLSRTSAKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDF+DTQMM
Sbjct: 251 VRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 310
Query: 2735 ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGVGEYCE 2556
ELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTKEKRIKYA++ILQKEMLPHVGVGE+CE
Sbjct: 311 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCE 370
Query: 2555 TKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY 2376
TKKAYYFGYIIHRLLLCA+GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY
Sbjct: 371 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY 430
Query: 2375 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 2196
VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL
Sbjct: 431 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 490
Query: 2195 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 2016
SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY
Sbjct: 491 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 550
Query: 2015 PILEFLEEWGTENFEEISPAVIPQSTKIFVNGLWVGIHRDPDMXXXXXXXXXXXXXVNTE 1836
PILEFLEEWGTENFEEISPAVIPQ+TKIFVNG WVGIHRDP+M VNTE
Sbjct: 551 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 610
Query: 1835 VGVVRDIRLKELRIYTDYGRCSRPLFIVEXXXXXXXXXXXXXXXXRETPEDGGWHDLVAN 1656
VGVVRDIRLKELRIYTDYGRCSRPLFIVE RE+PEDGGWHDLVA
Sbjct: 611 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAK 670
Query: 1655 GFXXXXXXXXXXXXXXXXXINDLVNARSNPDESYSDTYTHCEIHPSLILGVCASIIPFPD 1476
GF I+DL+ AR NP E+YSDTYTHCEIHPSLILGVCASIIPFPD
Sbjct: 671 GFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPD 730
Query: 1475 HNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 1296
HNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 731 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 790
Query: 1295 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRA 1116
INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+
Sbjct: 791 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 850
Query: 1115 NTMGMRHGSYDKLDDDGLAPPGTRVGGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTSLR 936
NTMGMRHGSYDKLDDDGLAPPGTRV GEDVIIGKTTPI+Q++AQGQA+RY+RRDHS SLR
Sbjct: 851 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLR 910
Query: 935 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 822
HSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 911 HSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 948
Score = 298 bits (763), Expect(2) = e-101
Identities = 142/144 (98%), Positives = 143/144 (99%)
Frame = -2
Query: 699 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM 520
NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETM
Sbjct: 981 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1040
Query: 519 YNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 340
YNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1041 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1100
Query: 339 MERDCMIAHGAAHFLKERLFDQSD 268
MERDCMIAHGAAHFLKERLFDQSD
Sbjct: 1101 MERDCMIAHGAAHFLKERLFDQSD 1124
Score = 100 bits (250), Expect(2) = e-101
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = -3
Query: 161 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVK 6
AIANLKK+SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM TK++K
Sbjct: 1138 AIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIK 1189