BLASTX nr result

ID: Atractylodes21_contig00004400 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00004400
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tu...   282   5e-74
ref|XP_002519893.1| arginine/serine-rich splicing factor, putati...   280   1e-73
ref|XP_003634148.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   276   3e-72
ref|XP_002321360.1| predicted protein [Populus trichocarpa] gi|2...   274   1e-71
ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   273   3e-71

>gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tuberosum]
          Length = 269

 Score =  282 bits (721), Expect = 5e-74
 Identities = 139/180 (77%), Positives = 144/180 (80%)
 Frame = -3

Query: 676 VGNLPLDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESARDAEDAIRGRDGYNF 497
           VGNLP DI+E EVEDLFYKYGRILDIELKIPPRPPCYCFVEFES+RDAEDAIRGRDGYNF
Sbjct: 11  VGNLPADIKELEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESSRDAEDAIRGRDGYNF 70

Query: 496 DGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSEYRVIVRGLPSSA 317
           DGCRLRVELAH                                  HS+YRVI+RGLPSSA
Sbjct: 71  DGCRLRVELAHGGRGPSSSSDRRGSYGSSGGGGGGGGRHGISR--HSDYRVIIRGLPSSA 128

Query: 316 SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYI 137
           SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWT+TYI
Sbjct: 129 SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTRTYI 188


>ref|XP_002519893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
           gi|223540939|gb|EEF42497.1| arginine/serine-rich
           splicing factor, putative [Ricinus communis]
          Length = 264

 Score =  280 bits (717), Expect = 1e-73
 Identities = 137/180 (76%), Positives = 142/180 (78%)
 Frame = -3

Query: 676 VGNLPLDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESARDAEDAIRGRDGYNF 497
           VGNLP DIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE+ RDAEDAIRGRDGYNF
Sbjct: 11  VGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENTRDAEDAIRGRDGYNF 70

Query: 496 DGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSEYRVIVRGLPSSA 317
           DGCRLRVELAH                                  HSE+RVIVRGLPSSA
Sbjct: 71  DGCRLRVELAHGGRGQSSSDRRGGYGGSGGGGSGSGGRYCISR--HSEFRVIVRGLPSSA 128

Query: 316 SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYI 137
           SWQDLKDHMRKAGDVCFAEVSRDS+GTFG+VDYTNYEDMKYAIRKLDDTEFRNPW + YI
Sbjct: 129 SWQDLKDHMRKAGDVCFAEVSRDSDGTFGIVDYTNYEDMKYAIRKLDDTEFRNPWARAYI 188


>ref|XP_003634148.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
           vinifera] gi|359490739|ref|XP_003634149.1| PREDICTED:
           pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
           vinifera] gi|302143975|emb|CBI23080.3| unnamed protein
           product [Vitis vinifera]
          Length = 250

 Score =  276 bits (705), Expect = 3e-72
 Identities = 134/180 (74%), Positives = 143/180 (79%)
 Frame = -3

Query: 676 VGNLPLDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESARDAEDAIRGRDGYNF 497
           VGNLP DIRE+E+EDLFYKYGRILD+ELKIPPRPPCYCFVEFE++RDAEDAIRGRDGYNF
Sbjct: 11  VGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRDGYNF 70

Query: 496 DGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSEYRVIVRGLPSSA 317
           DGCRLRVELAH                                  HSEYRVIVRGLPSSA
Sbjct: 71  DGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRFGVSR-------HSEYRVIVRGLPSSA 123

Query: 316 SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYI 137
           SWQDLKDHMRKAGDVCFAEVSRD++GTFGLVDYTN+EDMKYAIRKLDDTEFRNPW + YI
Sbjct: 124 SWQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKYAIRKLDDTEFRNPWARAYI 183


>ref|XP_002321360.1| predicted protein [Populus trichocarpa] gi|222868356|gb|EEF05487.1|
           predicted protein [Populus trichocarpa]
          Length = 240

 Score =  274 bits (700), Expect = 1e-71
 Identities = 134/180 (74%), Positives = 142/180 (78%)
 Frame = -3

Query: 676 VGNLPLDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESARDAEDAIRGRDGYNF 497
           VGNLP DIRE E+EDLFYKYGRILD+ELKIPPRPPCYCFVEFE+ARDAEDAIRGRDGYNF
Sbjct: 11  VGNLPADIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70

Query: 496 DGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSEYRVIVRGLPSSA 317
           DGCRLRVELAH                                  HSE+RVIVRGLPSSA
Sbjct: 71  DGCRLRVELAHGGRGPSSNDRRGGYGGGGGSGGRFGISR------HSEFRVIVRGLPSSA 124

Query: 316 SWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYI 137
           SWQDLKDHMRKAGDVCFAEVSRDS+GTFG+VDYTN+EDMKYAIRKLDDTEFRNPW + YI
Sbjct: 125 SWQDLKDHMRKAGDVCFAEVSRDSDGTFGVVDYTNHEDMKYAIRKLDDTEFRNPWARAYI 184


>ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
          Length = 263

 Score =  273 bits (697), Expect = 3e-71
 Identities = 133/183 (72%), Positives = 142/183 (77%), Gaps = 3/183 (1%)
 Frame = -3

Query: 676 VGNLPLDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESARDAEDAIRGRDGYNF 497
           VGNLP DIRE E+EDLFYKYGRI+DIELK+PPRPPCYCFVEF++ARDAEDAIRGRDGYNF
Sbjct: 11  VGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNF 70

Query: 496 DGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---HSEYRVIVRGLP 326
           DGCRLRVELAH                                     HSE+RVIVRGLP
Sbjct: 71  DGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGAGGGRFGISRHSEFRVIVRGLP 130

Query: 325 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTK 146
           SSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNY+DMKYAIRKLDDTEFRNPW +
Sbjct: 131 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWAR 190

Query: 145 TYI 137
            YI
Sbjct: 191 AYI 193


Top