BLASTX nr result

ID: Atractylodes21_contig00004306 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00004306
         (738 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein ...   183   4e-44
ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein ...   177   2e-42
ref|XP_002531336.1| RNA binding protein, putative [Ricinus commu...   172   8e-41
ref|XP_003625508.1| RNA binding protein [Medicago truncatula] gi...   166   5e-39
ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycin...   166   6e-39

>ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
           gi|297741476|emb|CBI32608.3| unnamed protein product
           [Vitis vinifera]
          Length = 140

 Score =  183 bits (464), Expect = 4e-44
 Identities = 91/141 (64%), Positives = 108/141 (76%)
 Frame = +3

Query: 105 MAFSSAFRRILNGXXXXXXXXXXXXRFSSTLTAPKLFISGLNRNTTDEKLREAFAPFGQL 284
           MAF+S+FRR+L G            RF+ST+T+PKLF+SGL+R TTDEKL+EAF+PFGQL
Sbjct: 1   MAFASSFRRVLTGSSTILQSQFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFGQL 60

Query: 285 VEAKVIMDRATQRSKGFAFVTYASIDEAEKAREGMNAKFLDGWVIFVDPAKPKEYRXXXX 464
           +EAKVI DR + RSKGF FVTY +++EAEKAREGMNAKFLDGWVIFVDPAKP+E R    
Sbjct: 61  LEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQ 120

Query: 465 XXXXXXXXFGFKTNKTIGWCG 527
                    GF+TNKTIGWCG
Sbjct: 121 QEPESSET-GFRTNKTIGWCG 140


>ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Cucumis sativus]
          Length = 146

 Score =  177 bits (449), Expect = 2e-42
 Identities = 96/147 (65%), Positives = 106/147 (72%), Gaps = 6/147 (4%)
 Frame = +3

Query: 105 MAFSSAFRRILNGXXXXXXXXXXXX------RFSSTLTAPKLFISGLNRNTTDEKLREAF 266
           MAF S  RR+LNG                  R SSTLT+PKLFISGL+R TTDEKLREAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 267 APFGQLVEAKVIMDRATQRSKGFAFVTYASIDEAEKAREGMNAKFLDGWVIFVDPAKPKE 446
           + FGQLV+AKV+ DRAT RSKGFAFVTY++IDEAEKARE MNAKFLDGWVIFVDPAKP+E
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 447 YRXXXXXXXXXXXXFGFKTNKTIGWCG 527
            R            FG +TNKTIGWCG
Sbjct: 121 PR-PPPQPQSETSEFGIRTNKTIGWCG 146


>ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
           gi|223529058|gb|EEF31043.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 144

 Score =  172 bits (435), Expect = 8e-41
 Identities = 91/144 (63%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
 Frame = +3

Query: 105 MAFSSAFRRILNGXXXXXXXXXXXX--RFSSTLTAPKLFISGLNRNTTDEKLREAFAPFG 278
           MAFSS  RR L G              RF STLT P+LF+SGL+R TTDEKL+EAF+PFG
Sbjct: 1   MAFSSIIRRGLFGSSSSLPASPALFLTRFHSTLTCPRLFVSGLSRLTTDEKLKEAFSPFG 60

Query: 279 QLVEAKVIMDRATQRSKGFAFVTYASIDEAEKAREGMNAKFLDGWVIFVDPAKPKEYR-X 455
           QLV+AKVI+DRA+ RSKGF F+TYA+I+EAEKAREGMNAKFLDGWVIFVDPAKP+E R  
Sbjct: 61  QLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREQRLP 120

Query: 456 XXXXXXXXXXXFGFKTNKTIGWCG 527
                       G+K N+TIGWCG
Sbjct: 121 PPPPPQPETSETGYKINRTIGWCG 144


>ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
           gi|355500523|gb|AES81726.1| RNA binding protein
           [Medicago truncatula]
          Length = 141

 Score =  166 bits (420), Expect = 5e-39
 Identities = 88/142 (61%), Positives = 102/142 (71%), Gaps = 1/142 (0%)
 Frame = +3

Query: 105 MAFSSAFRRIL-NGXXXXXXXXXXXXRFSSTLTAPKLFISGLNRNTTDEKLREAFAPFGQ 281
           MAF   F R+L +             R +STLT+PKLFISGL+R TTDEKL EAF+PFGQ
Sbjct: 1   MAFFFGFHRLLRHSQSPLVSSHFTSIRLNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQ 60

Query: 282 LVEAKVIMDRATQRSKGFAFVTYASIDEAEKAREGMNAKFLDGWVIFVDPAKPKEYRXXX 461
           L+EAKVI DR + RSKGFAFV+Y++I+EAEKAREGMNAKFLDGWVIFVDPAKP+E R   
Sbjct: 61  LLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQ 120

Query: 462 XXXXXXXXXFGFKTNKTIGWCG 527
                     GF  NKT+GWCG
Sbjct: 121 QSQSQPSQT-GFTVNKTVGWCG 141


>ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
           gi|255628209|gb|ACU14449.1| unknown [Glycine max]
          Length = 139

 Score =  166 bits (419), Expect = 6e-39
 Identities = 89/141 (63%), Positives = 101/141 (71%)
 Frame = +3

Query: 105 MAFSSAFRRILNGXXXXXXXXXXXXRFSSTLTAPKLFISGLNRNTTDEKLREAFAPFGQL 284
           MAF S  +R+L              R SSTLT+PKLF+SGL R T DEKL+EAF+ FGQL
Sbjct: 1   MAFMSGVQRLLR-RTPLVHSHYASIRLSSTLTSPKLFVSGLCRLTIDEKLKEAFSSFGQL 59

Query: 285 VEAKVIMDRATQRSKGFAFVTYASIDEAEKAREGMNAKFLDGWVIFVDPAKPKEYRXXXX 464
           VEAKVI+DRA+ RSKGFAFVTY +I+EAEKAREGMNAKFLDGWVIFVDPAKP+E R    
Sbjct: 60  VEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQ 119

Query: 465 XXXXXXXXFGFKTNKTIGWCG 527
                    GF  NKT+GWCG
Sbjct: 120 SQSQPSET-GFTVNKTVGWCG 139


Top