BLASTX nr result
ID: Atractylodes21_contig00004301
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00004301
(1615 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,... 117 1e-23
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 115 3e-23
ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2... 114 6e-23
sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, c... 112 3e-22
ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 111 5e-22
>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 117 bits (292), Expect = 1e-23
Identities = 67/129 (51%), Positives = 76/129 (58%), Gaps = 14/129 (10%)
Frame = +2
Query: 572 PLPKLFSVPTSSKLFEATPSS--------------RIIRNVAVXXXXXXXXXXXXXXXXX 709
PLPK S TS F PSS R +R V +
Sbjct: 19 PLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGVE 78
Query: 710 XXXNFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASM 889
NFSPDLK++VGNLPFS DSAALA LFE AGNVEMVEVIYDK++GRSRGFGFVTM+S
Sbjct: 79 EERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSK 138
Query: 890 EEVQEAVQK 916
EEV+ A Q+
Sbjct: 139 EEVEAACQQ 147
Score = 110 bits (274), Expect = 1e-21
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +1
Query: 1054 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLD 1233
AW VD ALETLF EQG V+DAKVVYDR+SGRSRGFGFVTYSSAEEVN+AIESL+GVDL+
Sbjct: 196 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLN 255
Query: 1234 GRNIRV 1251
GR IRV
Sbjct: 256 GRAIRV 261
Score = 73.9 bits (180), Expect = 1e-10
Identities = 36/65 (55%), Positives = 46/65 (70%)
Frame = +1
Query: 1057 WSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLDG 1236
+S D+ AL LF GNV +V+YD+ +GRSRGFGFVT SS EEV +A + NG +LDG
Sbjct: 96 FSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDG 155
Query: 1237 RNIRV 1251
R +RV
Sbjct: 156 RALRV 160
Score = 70.5 bits (171), Expect = 1e-09
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +2
Query: 719 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 898
+F +VYVGNL + VD AL LF E G V +V+YD+ SGRSRGFGFVT +S EEV
Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEV 242
Query: 899 QEAVQ 913
A++
Sbjct: 243 NNAIE 247
>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 115 bits (288), Expect = 3e-23
Identities = 65/109 (59%), Positives = 79/109 (72%)
Frame = +2
Query: 590 SVPTSSKLFEATPSSRIIRNVAVXXXXXXXXXXXXXXXXXXXXNFSPDLKVYVGNLPFSV 769
S+ SS+ F T SSR +RNVAV +FSPDLK++VGNLPF+V
Sbjct: 46 SLSPSSRGF-LTLSSRFVRNVAVSSDYEQDEDVLSDEGEP---SFSPDLKLFVGNLPFNV 101
Query: 770 DSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQK 916
DSA LAGLFE+AGNVEMVEVIYDKI+GRSRGFGFVTM+++EEV+ A Q+
Sbjct: 102 DSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQ 150
Score = 107 bits (268), Expect = 7e-21
Identities = 51/66 (77%), Positives = 61/66 (92%)
Frame = +1
Query: 1054 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLD 1233
+W VD+LALETLF EQG V +A+V+YDRE+GRSRGFGFVTY+SAEEVN AIESL+GVDL+
Sbjct: 212 SWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLN 271
Query: 1234 GRNIRV 1251
GR+IRV
Sbjct: 272 GRSIRV 277
Score = 71.6 bits (174), Expect = 5e-10
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1
Query: 1057 WSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLDG 1236
++VD+ L LF + GNV +V+YD+ +GRSRGFGFVT S+ EEV +A + NG +L+G
Sbjct: 99 FNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEG 158
Query: 1237 RNIRV 1251
R +RV
Sbjct: 159 RQLRV 163
Score = 68.6 bits (166), Expect = 5e-09
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +2
Query: 719 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 898
N + ++YVGNL + VD AL LF E G V VIYD+ +GRSRGFGFVT S EEV
Sbjct: 199 NLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEV 258
Query: 899 QEAVQ 913
A++
Sbjct: 259 NRAIE 263
>ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1|
predicted protein [Populus trichocarpa]
Length = 273
Score = 114 bits (286), Expect = 6e-23
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 1054 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLD 1233
+W+VDNLALETLFRE+G VMDAKVVYDR+SGRSRGFGFVTYSSAEEV++AI+SLNG +LD
Sbjct: 197 SWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELD 256
Query: 1234 GRNIRV 1251
GR IRV
Sbjct: 257 GRAIRV 262
Score = 104 bits (259), Expect = 8e-20
Identities = 55/93 (59%), Positives = 67/93 (72%)
Frame = +2
Query: 629 SSRIIRNVAVXXXXXXXXXXXXXXXXXXXXNFSPDLKVYVGNLPFSVDSAALAGLFEEAG 808
SSR ++NVA+ +FS DLK++VGNLPF+VDSA LAGLFE AG
Sbjct: 58 SSRFLKNVAISSEFGQEEDFLSDGDEQ---SFSQDLKLFVGNLPFNVDSARLAGLFETAG 114
Query: 809 NVEMVEVIYDKISGRSRGFGFVTMASMEEVQEA 907
NVEMVEVIYDK++GRSRGFGFVTM ++EEV+ A
Sbjct: 115 NVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAA 147
Score = 70.1 bits (170), Expect = 2e-09
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2
Query: 722 FSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQ 901
F +VYVGNL ++VD+ AL LF E G V +V+YD+ SGRSRGFGFVT +S EEV
Sbjct: 185 FDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVD 244
Query: 902 EAV 910
A+
Sbjct: 245 NAI 247
Score = 69.7 bits (169), Expect = 2e-09
Identities = 33/65 (50%), Positives = 46/65 (70%)
Frame = +1
Query: 1057 WSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLDG 1236
++VD+ L LF GNV +V+YD+ +GRSRGFGFVT ++ EEV +A + NG +LDG
Sbjct: 99 FNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDG 158
Query: 1237 RNIRV 1251
R +RV
Sbjct: 159 RTLRV 163
>sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor gi|19710|emb|CAA46233.1|
RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 112 bits (280), Expect = 3e-22
Identities = 53/66 (80%), Positives = 62/66 (93%)
Frame = +1
Query: 1054 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLD 1233
+W VD+LAL+ LF EQGNV+DAKVVYDR+SGRSRGFGFVTYSSA+EVN AI+SLNG+DLD
Sbjct: 216 SWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLD 275
Query: 1234 GRNIRV 1251
GR+IRV
Sbjct: 276 GRSIRV 281
Score = 106 bits (265), Expect = 2e-20
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +2
Query: 722 FSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQ 901
FS DLK++VGNLPFSVDSAALAGLFE AGNVE+VEVIYDK+SGRSRGFGFVTM++ EEV+
Sbjct: 84 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVE 143
Query: 902 EAVQK 916
A Q+
Sbjct: 144 AAEQQ 148
Score = 74.3 bits (181), Expect = 8e-11
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = +1
Query: 1057 WSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLDG 1236
+SVD+ AL LF GNV +V+YD+ SGRSRGFGFVT S+ EEV +A + NG ++DG
Sbjct: 97 FSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG 156
Query: 1237 RNIRV 1251
R IRV
Sbjct: 157 RAIRV 161
Score = 70.5 bits (171), Expect = 1e-09
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = +2
Query: 737 KVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAV 910
+VYVGNL + VD AL LF E GNV +V+YD+ SGRSRGFGFVT +S +EV +A+
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266
>ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
Length = 275
Score = 111 bits (278), Expect = 5e-22
Identities = 52/66 (78%), Positives = 63/66 (95%)
Frame = +1
Query: 1054 AWSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLD 1233
AW VDN+AL++LFREQGNV++A+V+YDRESGRSRGFGFVT+SS +EVNSAI+SLNGVDL+
Sbjct: 200 AWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLN 259
Query: 1234 GRNIRV 1251
GR IRV
Sbjct: 260 GRAIRV 265
Score = 102 bits (255), Expect = 2e-19
Identities = 49/66 (74%), Positives = 59/66 (89%)
Frame = +2
Query: 719 NFSPDLKVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEV 898
+FSPDLK++VGNLPF+VDSA LA LFE AGNVE+VEVIYDK +GRSRGFGFVTM+S+EE
Sbjct: 81 SFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEA 140
Query: 899 QEAVQK 916
+ A Q+
Sbjct: 141 EAAAQQ 146
Score = 72.0 bits (175), Expect = 4e-10
Identities = 34/65 (52%), Positives = 45/65 (69%)
Frame = +1
Query: 1057 WSVDNLALETLFREQGNVMDAKVVYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLDG 1236
++VD+ L LF GNV +V+YD+ +GRSRGFGFVT SS EE +A + NG +LDG
Sbjct: 95 FNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDG 154
Query: 1237 RNIRV 1251
R +RV
Sbjct: 155 RALRV 159
Score = 69.3 bits (168), Expect = 3e-09
Identities = 34/59 (57%), Positives = 42/59 (71%)
Frame = +2
Query: 737 KVYVGNLPFSVDSAALAGLFEEAGNVEMVEVIYDKISGRSRGFGFVTMASMEEVQEAVQ 913
+V+V NL + VD+ AL LF E GNV VIYD+ SGRSRGFGFVT +S +EV A+Q
Sbjct: 193 RVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQ 251