BLASTX nr result

ID: Atractylodes21_contig00002732 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00002732
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314076.1| predicted protein [Populus trichocarpa] gi|2...   104   8e-21
ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|1...    99   6e-19
ref|XP_003599257.1| Photosystem II 5 kDa protein [Medicago trunc...    96   5e-18
ref|XP_002513494.1| Photosystem II 5 kDa protein, chloroplast pr...    95   6e-18
gb|AFX66986.1| photosystem II 5 kDa protein [Solanum tuberosum]        91   1e-16

>ref|XP_002314076.1| predicted protein [Populus trichocarpa] gi|222850484|gb|EEE88031.1|
           predicted protein [Populus trichocarpa]
          Length = 105

 Score =  104 bits (260), Expect = 8e-21
 Identities = 61/111 (54%), Positives = 73/111 (65%)
 Frame = -1

Query: 535 MASITMAASFLGGSAAMAVTKQPSTSGRRGLVVMAKASKVAGVEKIVVDEKKEGDSSNGR 356
           MASITM ASFL GSA   + KQPST+ RRGL+V AKAS+    E + V+ K   +SS GR
Sbjct: 1   MASITMTASFLTGSA---MAKQPSTTPRRGLIV-AKASRAT--EGVNVEMKNREESSGGR 54

Query: 355 REMMFGVXXXXXXXXXXXXXADDEPKRGTEAAKKKYYPICVTMPTARVCHN 203
           R++MF               AD+EP+RGT  AKKKY PICVTMPTAR+C N
Sbjct: 55  RDLMFAAAAAAAYSIARVAIADEEPRRGTPEAKKKYAPICVTMPTARICRN 105


>ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|118487685|gb|ABK95667.1|
           unknown [Populus trichocarpa]
           gi|118488853|gb|ABK96236.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118488867|gb|ABK96243.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|118489821|gb|ABK96710.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118489889|gb|ABK96742.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|222845656|gb|EEE83203.1| predicted protein [Populus
           trichocarpa]
          Length = 105

 Score = 98.6 bits (244), Expect = 6e-19
 Identities = 57/109 (52%), Positives = 72/109 (66%)
 Frame = -1

Query: 535 MASITMAASFLGGSAAMAVTKQPSTSGRRGLVVMAKASKVAGVEKIVVDEKKEGDSSNGR 356
           MAS+TM ASFL GS    + KQP T+ RRGL+V AKAS+    E + V+ K + +SS+GR
Sbjct: 1   MASMTMTASFLAGST---MAKQPLTTPRRGLIV-AKASRTT--EGVNVEMKNKEESSSGR 54

Query: 355 REMMFGVXXXXXXXXXXXXXADDEPKRGTEAAKKKYYPICVTMPTARVC 209
           R++MF               AD+EP+RGT  AKKKY PICVTMPTAR+C
Sbjct: 55  RDLMFAAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARIC 103


>ref|XP_003599257.1| Photosystem II 5 kDa protein [Medicago truncatula]
           gi|355488305|gb|AES69508.1| Photosystem II 5 kDa protein
           [Medicago truncatula]
          Length = 106

 Score = 95.5 bits (236), Expect = 5e-18
 Identities = 56/111 (50%), Positives = 66/111 (59%)
 Frame = -1

Query: 535 MASITMAASFLGGSAAMAVTKQPSTSGRRGLVVMAKASKVAGVEKIVVDEKKEGDSSNGR 356
           MASITM +S LG  A   VT Q S + +R LVV+     V G + I  D  KEG  SNGR
Sbjct: 1   MASITMTSSILGFPA---VTNQSSVASQRRLVVVNAVRAVEGEKMIRYDNSKEG--SNGR 55

Query: 355 REMMFGVXXXXXXXXXXXXXADDEPKRGTEAAKKKYYPICVTMPTARVCHN 203
           R++MF               AD+EPKRGT  AKKKY P+CVTMPTAR+C N
Sbjct: 56  RDLMFAAAAAAVSTFAGVAMADEEPKRGTPEAKKKYAPVCVTMPTARICRN 106


>ref|XP_002513494.1| Photosystem II 5 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223547402|gb|EEF48897.1|
           Photosystem II 5 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 106

 Score = 95.1 bits (235), Expect = 6e-18
 Identities = 56/110 (50%), Positives = 73/110 (66%)
 Frame = -1

Query: 535 MASITMAASFLGGSAAMAVTKQPSTSGRRGLVVMAKASKVAGVEKIVVDEKKEGDSSNGR 356
           MAS+TM ASFL GS    +T+QP T+ RRGL+V AKASKV   E++ V+ K + +SS+GR
Sbjct: 1   MASMTMTASFLAGST---LTRQPFTAPRRGLIV-AKASKVTEGERVNVEMKNKEESSSGR 56

Query: 355 REMMFGVXXXXXXXXXXXXXADDEPKRGTEAAKKKYYPICVTMPTARVCH 206
           R+++F               AD EPK GT  AKKKY  ICV+MPTA++CH
Sbjct: 57  RDLVFAAAAAAAFSVAKVAMAD-EPKAGTLDAKKKYASICVSMPTAKICH 105


>gb|AFX66986.1| photosystem II 5 kDa protein [Solanum tuberosum]
          Length = 112

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 55/113 (48%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
 Frame = -1

Query: 535 MASITMAASFLGGSAAMAVTKQP-STSGRRGLVVMAKASK-VAGVEKIVVDEKKEGDSSN 362
           MAS+TM  S  GGS A A+TK P +T G R  VVM KAS  V+  E +V+  KKE +++ 
Sbjct: 1   MASMTMTTSLAGGSVA-ALTKAPVATRGAR--VVMVKASSNVSEGENVVMSNKKEINNNG 57

Query: 361 GRREMMFGVXXXXXXXXXXXXXADDEPKRGTEAAKKKYYPICVTMPTARVCHN 203
           GRRE+ F +             ADDEPKRG+  AKKKY+ +CV+ PTAR+C N
Sbjct: 58  GRRELFFAMAAAAACSVAGVAMADDEPKRGSPEAKKKYFQVCVSNPTARICRN 110


Top