BLASTX nr result
ID: Atractylodes21_contig00002037
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00002037
(3907 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2295 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2218 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2218 0.0
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare] 2200 0.0
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su... 2196 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2295 bits (5947), Expect = 0.0
Identities = 1134/1190 (95%), Positives = 1166/1190 (97%), Gaps = 2/1190 (0%)
Frame = +1
Query: 1 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 180
RGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGP
Sbjct: 347 RGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP 406
Query: 181 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKM 360
HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKM
Sbjct: 407 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKM 466
Query: 361 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 540
SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS
Sbjct: 467 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 526
Query: 541 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWT 720
PQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWT
Sbjct: 527 PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWT 586
Query: 721 GKQVFNLIIPKQINLIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGS 900
GKQVFNLIIPKQINL+RT+AWHSE+ETG++TPGDTQVRIEKGE++ GTLCKKTLG STGS
Sbjct: 587 GKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGS 646
Query: 901 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKN 1080
LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETISKAKN
Sbjct: 647 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKN 706
Query: 1081 EVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 1260
EVKELIRAAQ++QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT
Sbjct: 707 EVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766
Query: 1261 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 1440
AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826
Query: 1441 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 1620
TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY
Sbjct: 827 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 886
Query: 1621 GEDGMDAVWIETQKLDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNV 1800
GEDGMDAVWIETQKLDSLK+KKGEFDR++KYEIDD+NWNPSYMLPEHVEDLKTIREFRNV
Sbjct: 887 GEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNV 946
Query: 1801 FDAEVQKLEADRIQLGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1980
FDAEVQKLEADR QLGTEI TTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV
Sbjct: 947 FDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1006
Query: 1981 EAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIG 2160
EAVDKLQERL+VVPGDDL+S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIG
Sbjct: 1007 EAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIG 1066
Query: 2161 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2340
EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 1067 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1126
Query: 2341 AKNIKTPSLSVYLKPDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDV 2520
AK IKTPSLSVYLKPDVSKTK+RAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV
Sbjct: 1127 AKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV 1186
Query: 2521 DFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 2700
DFVKSYYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN
Sbjct: 1187 DFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 1246
Query: 2701 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 2880
DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS
Sbjct: 1247 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 1306
Query: 2881 GKVNRFDENEGFKPEVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRR 3060
GKVN+FDE+EGFKPEVEWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR
Sbjct: 1307 GKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR 1366
Query: 3061 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 3240
SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 3241 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLD 3420
DILLDAAVYAETD+LRGVTENIMLGQLAPIGTGDC LYLN+QMLQ AI++QLPSYM+GLD
Sbjct: 1427 DILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLD 1486
Query: 3421 IGMTPGRSPI--TPFHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 3564
GMTP RSPI TP+HDG MSP NYLLSPNLRLSPI DAQFSPYVGGM F
Sbjct: 1487 FGMTPSRSPITGTPYHDGMMSP-NYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2218 bits (5747), Expect = 0.0
Identities = 1092/1190 (91%), Positives = 1146/1190 (96%), Gaps = 2/1190 (0%)
Frame = +1
Query: 1 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 180
RGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGP
Sbjct: 347 RGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP 406
Query: 181 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKM 360
HPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKM
Sbjct: 407 HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKM 466
Query: 361 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 540
SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS
Sbjct: 467 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 526
Query: 541 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWT 720
PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWT
Sbjct: 527 PQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWT 586
Query: 721 GKQVFNLIIPKQINLIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGS 900
GKQVFNLIIPKQINL RT+AWHSE+ETG++TPGDT VRIEKGE+++GTLCKK LG STGS
Sbjct: 587 GKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGS 646
Query: 901 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKN 1080
LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATME INETIS AKN
Sbjct: 647 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKN 706
Query: 1081 EVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 1260
EVK LI+ AQ++ LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVT
Sbjct: 707 EVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766
Query: 1261 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 1440
AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826
Query: 1441 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 1620
TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY
Sbjct: 827 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 886
Query: 1621 GEDGMDAVWIETQKLDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNV 1800
GEDGMDAVWIE+QKLDSLK+KK EF+R+++YE +D+NW P+YMLPEHVEDLKTIREFRNV
Sbjct: 887 GEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNV 946
Query: 1801 FDAEVQKLEADRIQLGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1980
F+AEVQKLEADR QLGTEI TTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIV
Sbjct: 947 FEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIV 1006
Query: 1981 EAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIG 2160
EA+DKLQERL+VVPG+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIG
Sbjct: 1007 EAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIG 1066
Query: 2161 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2340
EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 1067 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1126
Query: 2341 AKNIKTPSLSVYLKPDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDV 2520
AK IKTPSLSVYLKP+ +KTK+RAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED+
Sbjct: 1127 AKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDI 1186
Query: 2521 DFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 2700
DFVKSYYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFN
Sbjct: 1187 DFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFN 1246
Query: 2701 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 2880
DDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1247 DDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC 1306
Query: 2881 GKVNRFDENEGFKPEVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRR 3060
GKVN+FDENEGFKPE+EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIEAVRR
Sbjct: 1307 GKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRR 1366
Query: 3061 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 3240
SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 3241 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLD 3420
DILLDAAVYAETD+LRGVTENIMLGQLAPIGTG C LYLN++ML+ AI++QLPSY+DGLD
Sbjct: 1427 DILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLD 1486
Query: 3421 IGMTPGRSPI--TPFHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 3564
GMTP RSPI TP+H+G MSP NYLLSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1487 FGMTPSRSPISGTPYHEGMMSP-NYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2218 bits (5747), Expect = 0.0
Identities = 1092/1190 (91%), Positives = 1146/1190 (96%), Gaps = 2/1190 (0%)
Frame = +1
Query: 1 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 180
RGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGP
Sbjct: 347 RGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP 406
Query: 181 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKM 360
HPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLE GYKVERHLNDGDFVLFNRQPSLHKM
Sbjct: 407 HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKM 466
Query: 361 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 540
SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS
Sbjct: 467 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 526
Query: 541 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWT 720
PQ+NRPVMGIVQDTLLGCRK+TKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWT
Sbjct: 527 PQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWT 586
Query: 721 GKQVFNLIIPKQINLIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGS 900
GKQVFNLIIPKQINL RT+AWHSE+ETG++TPGDT VRIEKGE+++GTLCKK LG STGS
Sbjct: 587 GKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGS 646
Query: 901 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKN 1080
LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATME INETIS AKN
Sbjct: 647 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKN 706
Query: 1081 EVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 1260
EVK LI+ AQ++ LE EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVT
Sbjct: 707 EVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766
Query: 1261 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 1440
AGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 826
Query: 1441 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 1620
TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY
Sbjct: 827 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 886
Query: 1621 GEDGMDAVWIETQKLDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNV 1800
GEDGMDAVWIE+QKLDSLK+KK EF+R+++YE +D+NW P+YMLPEHVEDLKTIREFRNV
Sbjct: 887 GEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNV 946
Query: 1801 FDAEVQKLEADRIQLGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1980
F+AEVQKLEADR QLGTEI TTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIV
Sbjct: 947 FEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIV 1006
Query: 1981 EAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIG 2160
EA+DKLQERL+VVPG+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIG
Sbjct: 1007 EAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIG 1066
Query: 2161 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2340
EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 1067 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1126
Query: 2341 AKNIKTPSLSVYLKPDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDV 2520
AK IKTPSLSVYLKP+ +KTK+RAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED+
Sbjct: 1127 AKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDI 1186
Query: 2521 DFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 2700
DFVKSYYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFN
Sbjct: 1187 DFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFN 1246
Query: 2701 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 2880
DDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1247 DDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC 1306
Query: 2881 GKVNRFDENEGFKPEVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRR 3060
GKVN+FDENEGFKPE+EWMLDTEGVNLLAVMTHEDVDA RTTSNHLIEVIEVLGIEAVRR
Sbjct: 1307 GKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRR 1366
Query: 3061 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 3240
SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 3241 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLD 3420
DILLDAAVYAETD+LRGVTENIMLGQLAPIGTG C LYLN++ML+ AI++QLPSY+DGLD
Sbjct: 1427 DILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLD 1486
Query: 3421 IGMTPGRSPI--TPFHDGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 3564
GMTP RSPI TP+H+G MSP NYLLSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1487 FGMTPSRSPISGTPYHEGMMSP-NYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 2200 bits (5700), Expect = 0.0
Identities = 1079/1191 (90%), Positives = 1141/1191 (95%), Gaps = 3/1191 (0%)
Frame = +1
Query: 1 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 180
RGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP
Sbjct: 347 RGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 406
Query: 181 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKM 360
HPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLE GYKVERHLNDGDFVLFNRQPSLHKM
Sbjct: 407 HPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKM 466
Query: 361 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 540
SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS
Sbjct: 467 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 526
Query: 541 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWT 720
PQANRPVMGIVQDTLLGCRK+TKRDT IEKDVFMNILMWWEDFDGKVP P IL+PRP+WT
Sbjct: 527 PQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWT 586
Query: 721 GKQVFNLIIPKQINLIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGS 900
GKQVFNLIIPK INLIR +AWH+ETE+G++TPGDT VRIEKGE+++GTLCKKTLG STGS
Sbjct: 587 GKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGS 646
Query: 901 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKN 1080
LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETI AKN
Sbjct: 647 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKN 706
Query: 1081 EVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 1260
EVKELI+ AQ+K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT
Sbjct: 707 EVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 766
Query: 1261 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 1440
AGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL
Sbjct: 767 AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 826
Query: 1441 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 1620
TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY
Sbjct: 827 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 886
Query: 1621 GEDGMDAVWIETQKLDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNV 1800
GEDGMDAVWIE+QKLDSLK+KK EFD +++YE+DD+NW P+YMLP+HV+DLKTIREFRNV
Sbjct: 887 GEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNV 946
Query: 1801 FDAEVQKLEADRIQLGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1980
F+AEVQKLEADR+QLGTEI TTGDN+WPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIV
Sbjct: 947 FEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIV 1006
Query: 1981 EAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIG 2160
EA+DKLQERL+VVPGDD +SIEAQKNATLFFNILLRSTFASKRVL EYRLT+E+FEWVIG
Sbjct: 1007 EAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 1066
Query: 2161 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2340
EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 1067 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1126
Query: 2341 AKNIKTPSLSVYLKPDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDV 2520
AK IKTPSLSV+LKP+VSK K+ AKNVQCALEYTTLRSVT ATE+WYDPDP+ T+IEEDV
Sbjct: 1127 AKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDV 1186
Query: 2521 DFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 2700
+FV+SYYEMPDE+IDPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFN
Sbjct: 1187 EFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFN 1246
Query: 2701 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 2880
DDNA+KLILR+RI NDEAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK
Sbjct: 1247 DDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKY 1306
Query: 2881 GKVNRFDENEGFKPEVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRR 3060
GKVN+FDE+EGFKP+ EWMLDTEGVNLLAVM HEDVD+ RTTSNHLIEVIEVLGIEAVRR
Sbjct: 1307 GKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRR 1366
Query: 3061 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 3240
SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1426
Query: 3241 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLD 3420
DILLDAAVYAE+DYLRGVTENIMLGQLAPIGTG CGLYLN+QMLQQAI++QLPSY++GLD
Sbjct: 1427 DILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLD 1486
Query: 3421 IGMTPGRSPI--TPFHDGA-MSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 3564
GMTP RSP+ TP+ DG MSP +LSPN R SPI DAQFSPYVGGM F
Sbjct: 1487 YGMTPARSPMSATPYRDGGMMSP---MLSPNFRASPITDAQFSPYVGGMAF 1534
>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 2196 bits (5690), Expect = 0.0
Identities = 1082/1192 (90%), Positives = 1143/1192 (95%), Gaps = 4/1192 (0%)
Frame = +1
Query: 1 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 180
RGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGP
Sbjct: 348 RGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP 407
Query: 181 HPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKM 360
HPPPGKTGAKYIIREDGQRLDLRY+KKSSD HLE GYKVERHLNDGDFVLFNRQPSLHKM
Sbjct: 408 HPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKM 467
Query: 361 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 540
SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS
Sbjct: 468 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 527
Query: 541 PQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWT 720
PQANRPVMGIVQDTLLGCRK+TKRDT IEKDVFMNILMWWEDFDGKVP P ILKPRP+WT
Sbjct: 528 PQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWT 587
Query: 721 GKQVFNLIIPKQINLIRTAAWHSETETGYLTPGDTQVRIEKGEVITGTLCKKTLGASTGS 900
GKQVFNLIIPK INLIR +AWH+E+E+G++TPGDT VRIEKGE+++GTLCKKTLG TGS
Sbjct: 588 GKQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGS 647
Query: 901 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKN 1080
LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADA+TME INETISKAK+
Sbjct: 648 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKS 707
Query: 1081 EVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 1260
EV ELI+ AQDK LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT
Sbjct: 708 EVTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVT 767
Query: 1261 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 1440
AGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTK+DYGPESRGFVENSYLRGL
Sbjct: 768 AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGL 827
Query: 1441 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 1620
TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY
Sbjct: 828 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 887
Query: 1621 GEDGMDAVWIETQKLDSLKIKKGEFDRLYKYEIDDDNWNPSYMLPEHVEDLKTIREFRNV 1800
GEDGMDAVWIETQKLDSLK+KK EFD +Y+YE+DD+NW P+YMLPEHV+DLKTIREFRNV
Sbjct: 888 GEDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNV 947
Query: 1801 FDAEVQKLEADRIQLGTEIVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIV 1980
F+AEVQKLEADR+QLGTEI TTGDNSWPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIV
Sbjct: 948 FEAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIV 1007
Query: 1981 EAVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIG 2160
EA+DKLQERL+VVPGDD +SIEAQKNATLFFNILLRSTFASKRVL EYRLT+E+FEWVIG
Sbjct: 1008 EAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 1067
Query: 2161 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2340
EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 1068 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1127
Query: 2341 AKNIKTPSLSVYLKPDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDV 2520
AK IKTPSLSV+LKP+VSK K+ AKNVQCALEYTTLRSVT ATE+WYDPDP+ T+IEED+
Sbjct: 1128 AKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDM 1187
Query: 2521 DFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 2700
DFVKSYYEMPDE+IDPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFN
Sbjct: 1188 DFVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFN 1247
Query: 2701 DDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKS 2880
DDNA+KLILR+RI NDEAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK
Sbjct: 1248 DDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKY 1307
Query: 2881 GKVNRFDENEGFKPEVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRR 3060
GK+N+FDEN+GFKP+ EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR
Sbjct: 1308 GKINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1367
Query: 3061 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 3240
SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETV
Sbjct: 1368 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427
Query: 3241 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCGLYLNEQMLQQAIDVQLPSYMDGLD 3420
DILLDAAVYAE+DYLRGVTENIMLGQLAPIGTG CGLYLN+QMLQQAI++QLPSY++GL+
Sbjct: 1428 DILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLE 1487
Query: 3421 -IGMTPGR-SPI-TPFHDGA-MSPTNYLLSPNLRLSPINDAQFSPYVGGMGF 3564
IGMTP R SP TP+HDG MSP +LSPN R SPI+DAQFSPYVGGM F
Sbjct: 1488 YIGMTPARASPSGTPYHDGGMMSP---MLSPNFRSSPISDAQFSPYVGGMAF 1536