BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00029854
         (720 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX84630.1| retrovirus-related Pol polyprotein from transposo...   115   1e-66
gb|PNX62837.1| retrovirus-related Pol polyprotein from transposo...   114   5e-65
dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subt...   107   2e-61
gb|PNX92076.1| retrovirus-related Pol polyprotein from transposo...    99   2e-61
gb|PNX95813.1| retrovirus-related Pol polyprotein from transposo...   105   3e-61
gb|PNY05485.1| retrovirus-related Pol polyprotein from transposo...    99   4e-60
dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subt...   108   6e-60
gb|PNY00520.1| retrovirus-related Pol polyprotein from transposo...   114   1e-59
gb|PNY11804.1| retrovirus-related Pol polyprotein from transposo...   114   1e-59
gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymera...   100   3e-59
dbj|GAU22921.1| hypothetical protein TSUD_326940 [Trifolium subt...   112   5e-59
dbj|GAU24468.1| hypothetical protein TSUD_319450 [Trifolium subt...   101   7e-59
gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposo...   110   1e-58
dbj|GAU50785.1| hypothetical protein TSUD_192210 [Trifolium subt...   114   1e-58
gb|AJY78065.1| putative polyprotein [Glycine max]                     110   1e-58
gb|PNX93071.1| retrovirus-related Pol polyprotein from transposo...   102   2e-56
dbj|GAU25332.1| hypothetical protein TSUD_375950 [Trifolium subt...   108   7e-54
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...    94   1e-53
gb|PNX98110.1| peptide transporter PTR2, partial [Trifolium prat...   104   1e-53
gb|PNX88255.1| retrovirus-related Pol polyprotein from transposo...   114   7e-52

>gb|PNX84630.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 543

 Score =  115 bits (288), Expect(3) = 1e-66
 Identities = 54/80 (67%), Positives = 66/80 (82%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HKADG++ERYKARLV  GYTQ E IDFF TFSPVAK+ TVRTLIA+  IK WH+HQL+V
Sbjct: 289 KHKADGSIERYKARLVAKGYTQVEGIDFFETFSPVAKITTVRTLIALAAIKSWHLHQLDV 348

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG+L+ + YM++P G
Sbjct: 349 NNAFLHGELQEEVYMSIPQG 368



 Score =  101 bits (251), Expect(3) = 1e-66
 Identities = 48/86 (55%), Positives = 64/86 (74%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V +S P+QVCKLLKS YG KQASR+WY++L+++L+  G+ Q  +  +LFT   DSS+ AL
Sbjct: 369 VTTSKPNQVCKLLKSLYGLKQASRKWYEKLTSVLLAQGYMQSSSDHSLFTLHKDSSFTAL 428

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLDE 225
           L+YVDDI+L GD   EF HIK  LD+
Sbjct: 429 LVYVDDIILAGDSHDEFLHIKKLLDD 454



 Score = 86.7 bits (213), Expect(3) = 1e-66
 Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK LG LK F G+EVAHS  GI+LCQR YCL+LL+D+G  G+KP  TP++P    H D
Sbjct: 456 FRIKDLGQLKYFLGIEVAHSSQGITLCQRKYCLDLLQDTGLLGAKPAKTPLDPSVKLHQD 515

Query: 45  DSVPFHHIACYRHLV 1
            S PF  IA YR LV
Sbjct: 516 TSPPFEDIASYRRLV 530


>gb|PNX62837.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 297

 Score =  114 bits (284), Expect(3) = 5e-65
 Identities = 53/80 (66%), Positives = 66/80 (82%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HKADG++ERYKARLV  GYTQ E IDFF TFSPVAK+ TVRTLIA+  I+ WH+HQL+V
Sbjct: 3   KHKADGSIERYKARLVAKGYTQVEGIDFFETFSPVAKITTVRTLIALAAIQSWHLHQLDV 62

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG+L+ + YM++P G
Sbjct: 63  NNAFLHGELQEEVYMSIPQG 82



 Score =  104 bits (259), Expect(3) = 5e-65
 Identities = 49/86 (56%), Positives = 65/86 (75%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V +S P+QVCKLLKS YG KQASR+WY++L+ +L+  G+ Q  +  +LFT   DSS+ AL
Sbjct: 83  VTTSRPNQVCKLLKSLYGLKQASRKWYEKLTGVLLAQGYVQSSSDHSLFTLSKDSSFTAL 142

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLDE 225
           L+YVDDI+L GD L EF+HIK  LD+
Sbjct: 143 LVYVDDIILAGDSLDEFTHIKQLLDD 168



 Score = 80.1 bits (196), Expect(3) = 5e-65
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK LG LK F G+EVAHS  GI+LCQR Y L+LL+D+G  G+KP  TP++P    H D
Sbjct: 170 FKIKDLGQLKYFLGIEVAHSNQGITLCQRKYFLDLLQDTGLLGAKPAKTPLDPSVKLHQD 229

Query: 45  DSVPFHHIACYRHLV 1
            S P+  IA YR LV
Sbjct: 230 TSPPYADIASYRRLV 244


>dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subterraneum]
          Length = 1494

 Score =  107 bits (266), Expect(3) = 2e-61
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            + KADGT++RYKARLV  GY Q E +DF  TFSPVAKM T+RT++A+  IK WHIHQL+V
Sbjct: 980  KRKADGTIDRYKARLVAKGYNQIEGVDFSQTFSPVAKMTTIRTVLAIASIKNWHIHQLDV 1039

Query: 540  I*AFLHGKLK*DAYMTMP 487
              AFLHG L  + YMT+P
Sbjct: 1040 DNAFLHGDLDENVYMTVP 1057



 Score = 92.4 bits (228), Expect(3) = 2e-61
 Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH-HND 46
            FGIK +G+LK F GLEVAHS  GI+LCQR YCL+LL D+GN G KP S PM+P +  H+D
Sbjct: 1147 FGIKDIGVLKFFLGLEVAHSQQGITLCQRKYCLDLLNDTGNLGCKPSSIPMDPSNRLHHD 1206

Query: 45   DSVPFHHIACYRHLV 1
            DS P  +I  YR LV
Sbjct: 1207 DSEPHSNITEYRALV 1221



 Score = 87.0 bits (214), Expect(3) = 2e-61
 Identities = 42/87 (48%), Positives = 60/87 (68%)
 Frame = -2

Query: 485  RVPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVA 306
            R   ++  QVCKL K  YG +QASRQWY++LS+ L+ +G+K   +  TLFT+ T +S+  
Sbjct: 1059 RFEGATSRQVCKLQKFLYGLRQASRQWYEKLSHFLITIGYKHMPSDPTLFTKTTSASFTT 1118

Query: 305  LLIYVDDIVLVGDHLSEFSHIKSKLDE 225
            LL+YVDDIVL G+ L+E    KS+L +
Sbjct: 1119 LLVYVDDIVLSGNCLAEIESTKSQLHQ 1145


>gb|PNX92076.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 720

 Score = 99.0 bits (245), Expect(3) = 2e-61
 Identities = 42/82 (51%), Positives = 66/82 (80%)
 Frame = -2

Query: 476 SSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLI 297
           ++ P++VCKL+KS YG KQASRQWY +L++LL++ G+KQ H+  +LFT+   S +  LL+
Sbjct: 315 TNDPNKVCKLVKSLYGLKQASRQWYAKLTSLLLSHGYKQAHSDHSLFTKHDASHFTLLLV 374

Query: 296 YVDDIVLVGDHLSEFSHIKSKL 231
           YVDD++L G+H++EFS++K+ L
Sbjct: 375 YVDDVILAGNHMAEFSYVKNLL 396



 Score = 97.4 bits (241), Expect(3) = 2e-61
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +H ADG++ERYKARLV  G+ Q E +D+F+TFSPVAK+ TVR +IA+  +  W +HQL+V
Sbjct: 234 KHHADGSVERYKARLVAKGFNQIEGLDYFDTFSPVAKLTTVRIVIALASVHNWFLHQLDV 293

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG L+ D YM  P G
Sbjct: 294 NNAFLHGDLQEDVYMLPPPG 313



 Score = 89.7 bits (221), Expect(3) = 2e-61
 Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK LG LK F GLEVAHS  GISLCQR YCL+LL DSG  G+KPVSTP +     H D
Sbjct: 400 FKIKDLGQLKYFLGLEVAHSAKGISLCQRKYCLDLLSDSGLLGAKPVSTPSDASLKLHAD 459

Query: 45  DSVPFHHIACYRHLV 1
           DS PF  I+ YR LV
Sbjct: 460 DSAPFEDISAYRRLV 474


>gb|PNX95813.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1351

 Score =  105 bits (262), Expect(3) = 3e-61
 Identities = 48/80 (60%), Positives = 61/80 (76%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            + KADG+++RYKARLV  GY Q E ID+F TFSPVAKM T+RT++A+  I+ WH+HQL+V
Sbjct: 891  KRKADGSIDRYKARLVAKGYNQIEGIDYFETFSPVAKMTTIRTVLAIASIQRWHVHQLDV 950

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L  D YM +P G
Sbjct: 951  DNAFLHGDLDEDVYMKIPQG 970



 Score = 91.3 bits (225), Expect(3) = 3e-61
 Identities = 47/76 (61%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH--HN 49
            FGIK +G+LK F GLEVAHS  GI+LCQR YCL+LL ++GN G KP S PM+P SH  H+
Sbjct: 1058 FGIKDIGVLKFFLGLEVAHSEQGITLCQRKYCLDLLNETGNLGCKPSSIPMDP-SHRPHH 1116

Query: 48   DDSVPFHHIACYRHLV 1
            DDS P  +I  YR LV
Sbjct: 1117 DDSTPHENITEYRALV 1132



 Score = 88.6 bits (218), Expect(3) = 3e-61
 Identities = 43/81 (53%), Positives = 57/81 (70%)
 Frame = -2

Query: 467  PSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLIYVD 288
            P++ CKL+KS YG KQASRQWY +LS+ L  +G+ Q  +  TLFT+   S + +LL+YVD
Sbjct: 976  PNKTCKLIKSLYGLKQASRQWYAKLSHFLTTIGYTQMPSDPTLFTKSNQSEFTSLLVYVD 1035

Query: 287  DIVLVGDHLSEFSHIKSKLDE 225
            DIVL G+ L+E    KSKL E
Sbjct: 1036 DIVLAGNCLAEIQVTKSKLHE 1056


>gb|PNY05485.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 359

 Score = 99.4 bits (246), Expect(3) = 4e-60
 Identities = 46/80 (57%), Positives = 59/80 (73%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +H ADGT+ERYKARLV  G+ Q E +D+F+TFSPVAK+ TVR +IA+  +  W +HQL V
Sbjct: 35  KHHADGTVERYKARLVAKGFNQIEGLDYFDTFSPVAKLTTVRMVIALATVHNWFLHQLGV 94

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG L+ D +MT P G
Sbjct: 95  TNAFLHGDLQEDVHMTPPPG 114



 Score = 95.1 bits (235), Expect(3) = 4e-60
 Identities = 40/82 (48%), Positives = 64/82 (78%)
 Frame = -2

Query: 476 SSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLI 297
           ++ P++VCKL+KS YG KQASRQWY + ++LL++ G+KQ H   +LFT+   S +  LL+
Sbjct: 116 TNDPNKVCKLVKSLYGLKQASRQWYAKHTSLLLSHGYKQAHCDHSLFTKHDASHFTLLLV 175

Query: 296 YVDDIVLVGDHLSEFSHIKSKL 231
           YVDD+++ G+H++EFS++K+ L
Sbjct: 176 YVDDVIIAGNHMAEFSYVKNLL 197



 Score = 87.4 bits (215), Expect(3) = 4e-60
 Identities = 46/75 (61%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK LG LK F GLEVAHS  GISLCQR +CL+LL DSG  G+KPVSTP       H D
Sbjct: 201 FKIKDLGQLKYFLGLEVAHSAKGISLCQRKHCLDLLTDSGLLGAKPVSTPSNASIKLHAD 260

Query: 45  DSVPFHHIACYRHLV 1
           D+ P+  I+ YRHLV
Sbjct: 261 DTAPYEDISAYRHLV 275


>dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subterraneum]
          Length = 1512

 Score =  108 bits (270), Expect(3) = 6e-60
 Identities = 50/80 (62%), Positives = 64/80 (80%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            +HKADG++ERYKARLV  GY Q E +DFF+TFSPVAK+ TVRTLIA+  I+ WH++Q++V
Sbjct: 1037 KHKADGSVERYKARLVAKGYNQVEGLDFFDTFSPVAKITTVRTLIALASIRSWHLNQMDV 1096

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L+ D YM +P G
Sbjct: 1097 NNAFLHGDLQEDVYMEVPQG 1116



 Score = 92.4 bits (228), Expect(3) = 6e-60
 Identities = 45/85 (52%), Positives = 60/85 (70%)
 Frame = -2

Query: 482  VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
            V S  P QVCKLLKS YG KQASR+WY++L++LL+  G+ Q  +  +LFT    S + AL
Sbjct: 1117 VNSPKPHQVCKLLKSLYGLKQASRKWYEKLTSLLLKEGYTQASSDHSLFTLKHGSDFTAL 1176

Query: 302  LIYVDDIVLVGDHLSEFSHIKSKLD 228
            L+YVDDI+L G+ L EF+ IK  +D
Sbjct: 1177 LVYVDDIILAGNSLQEFARIKLIMD 1201



 Score = 80.1 bits (196), Expect(3) = 6e-60
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
            F IK LG LK F G+EVAHS  GIS+CQR YCL+LL+D+G  GSKP  TP++P    H D
Sbjct: 1204 FKIKDLGPLKYFLGIEVAHSKQGISICQRKYCLDLLKDTGLLGSKPAPTPLDPSIKLHQD 1263

Query: 45   DSVPFHHIACYRHLV 1
             S  +  +  YR L+
Sbjct: 1264 SSPAYDDVGGYRRLI 1278


>gb|PNY00520.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 690

 Score =  114 bits (284), Expect(3) = 1e-59
 Identities = 51/80 (63%), Positives = 65/80 (81%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HK+DG++ERYKARLV  GY Q E +DFF+TFSPVAK+ TVRTLIA+  +K WH+HQ++V
Sbjct: 254 KHKSDGSIERYKARLVAKGYNQVEGLDFFDTFSPVAKITTVRTLIAIASLKSWHLHQMDV 313

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG L+ D YMT+P G
Sbjct: 314 NNAFLHGDLQEDVYMTVPPG 333



 Score = 95.9 bits (237), Expect(3) = 1e-59
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V S  P+QVCKLLKS YG KQASR+WY+RL+ LL+   +KQ +   +LFT    S + AL
Sbjct: 334 VTSPKPNQVCKLLKSLYGLKQASRKWYERLTALLVKQRYKQSNPGHSLFTLTNKSEFTAL 393

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLDENLE 216
           L+YVDDI+L G+ L+EF  IK  +D+  +
Sbjct: 394 LVYVDDIILAGNSLAEFDRIKRIMDDEFK 422



 Score = 70.1 bits (170), Expect(3) = 1e-59
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
 Frame = -1

Query: 225 EFGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSG--NFGSKPVSTPMEPG-SH 55
           EF IK LG LK F G+EVAHS  GIS+CQR YCL+LL D+G    GSKP  TP++     
Sbjct: 420 EFKIKDLGKLKYFLGIEVAHSKQGISICQRKYCLDLLLDTGLSLTGSKPAPTPLDSSVKL 479

Query: 54  HNDDSVPFHHIACYRHLV 1
           + D S  +  I  YR L+
Sbjct: 480 YQDSSAAYEDIGGYRRLM 497


>gb|PNY11804.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 620

 Score =  114 bits (284), Expect(3) = 1e-59
 Identities = 51/80 (63%), Positives = 65/80 (81%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HK+DG++ERYKARLV  GY Q E +DFF+TFSPVAK+ TVRTLIA+  +K WH+HQ++V
Sbjct: 139 KHKSDGSIERYKARLVAKGYNQVEGLDFFDTFSPVAKITTVRTLIAIASLKSWHLHQMDV 198

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG L+ D YMT+P G
Sbjct: 199 NNAFLHGDLQEDVYMTVPPG 218



 Score = 95.9 bits (237), Expect(3) = 1e-59
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V S  P+QVCKLLKS YG KQASR+WY+RL+ LL+   +KQ +   +LFT    S + AL
Sbjct: 219 VTSPKPNQVCKLLKSLYGLKQASRKWYERLTALLVKQRYKQSNPGHSLFTLTNKSEFTAL 278

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLDENLE 216
           L+YVDDI+L G+ L+EF  IK  +D+  +
Sbjct: 279 LVYVDDIILAGNSLAEFDRIKRIMDDEFK 307



 Score = 70.1 bits (170), Expect(3) = 1e-59
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
 Frame = -1

Query: 225 EFGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSG--NFGSKPVSTPMEPG-SH 55
           EF IK LG LK F G+EVAHS  GIS+CQR YCL+LL D+G    GSKP  TP++     
Sbjct: 305 EFKIKDLGKLKYFLGIEVAHSKQGISICQRKYCLDLLLDTGLSLTGSKPAPTPLDSSVKL 364

Query: 54  HNDDSVPFHHIACYRHLV 1
           + D S  +  I  YR L+
Sbjct: 365 YQDSSAAYEDIGGYRRLM 382


>gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymerase) [Medicago
           truncatula]
          Length = 293

 Score =  100 bits (250), Expect(3) = 3e-59
 Identities = 45/80 (56%), Positives = 60/80 (75%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +H  DG++ERYKARLV  GY Q E +D+F+T+SPVAK+ TVR +IA+  I  WH+HQ +V
Sbjct: 35  KHNVDGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRFIIALASINHWHLHQFDV 94

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG+L+ D YM +P G
Sbjct: 95  NNAFLHGELQEDVYMIIPPG 114



 Score = 92.0 bits (227), Expect(3) = 3e-59
 Identities = 43/86 (50%), Positives = 62/86 (72%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           VP S   +VCKL KS YG +QAS +WY++L+N+L++ G+KQ  +  +LF + T SS+  L
Sbjct: 115 VPHSHQDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTIL 174

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLDE 225
           L+YVDD++L GD LSEF+ IK  L +
Sbjct: 175 LVYVDDVILAGDTLSEFNTIKGVLHD 200



 Score = 85.9 bits (211), Expect(3) = 3e-59
 Identities = 45/75 (60%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK +G LK F GLEVAHS  GISLCQR YCL+LLEDSG  GSKP++TP +P    HND
Sbjct: 202 FKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDSGLTGSKPMNTPSDPSIKLHND 261

Query: 45  DSVPFHHIACYRHLV 1
            +  F  I  YR L+
Sbjct: 262 SAPSFPDIPAYRRLI 276


>dbj|GAU22921.1| hypothetical protein TSUD_326940 [Trifolium subterraneum]
          Length = 1122

 Score =  112 bits (280), Expect(3) = 5e-59
 Identities = 51/80 (63%), Positives = 65/80 (81%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HKADG++ERYKARLV  GY Q E +DFF+T+SPVAK+ TVRTLIA+  IK WH+HQ++V
Sbjct: 696 KHKADGSIERYKARLVAKGYNQIEGLDFFDTYSPVAKITTVRTLIALASIKSWHLHQMDV 755

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG+L+ D YM +P G
Sbjct: 756 NNAFLHGELQEDVYMAIPQG 775



 Score = 88.2 bits (217), Expect(3) = 5e-59
 Identities = 43/85 (50%), Positives = 57/85 (67%)
 Frame = -2

Query: 482  VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
            V  S P+QVCKLLKS YG KQASR+WY+RL+ LL+   + Q  +  +LFT      + AL
Sbjct: 776  VKVSKPNQVCKLLKSLYGLKQASRKWYERLTGLLVQQSYSQSSSDHSLFTLQHGHHFTAL 835

Query: 302  LIYVDDIVLVGDHLSEFSHIKSKLD 228
            L+YVDDI+L G+ L E + IK  +D
Sbjct: 836  LVYVDDIILAGNTLEEINRIKQVMD 860



 Score = 77.4 bits (189), Expect(3) = 5e-59
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = -1

Query: 225  EFGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH-HN 49
            EF IK LG LK F G+EVAHS  GIS+CQR YCL+LL D+G  GSKP  TP +P +  H 
Sbjct: 862  EFKIKDLGKLKYFLGIEVAHSSQGISICQRKYCLDLLSDTGLIGSKPAPTPFDPSTKLHQ 921

Query: 48   DDSVPFHHI 22
            D S  +  I
Sbjct: 922  DSSAAYEDI 930


>dbj|GAU24468.1| hypothetical protein TSUD_319450 [Trifolium subterraneum]
          Length = 1245

 Score =  101 bits (252), Expect(3) = 7e-59
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            + K DG+++RYKARLV  GY Q E +D+F TFSPVAK+ T+R ++AV  IK WHIHQL+V
Sbjct: 846  KRKTDGSIDRYKARLVAKGYNQIEGVDYFQTFSPVAKLTTIRIVLAVASIKHWHIHQLDV 905

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L  + YM++P G
Sbjct: 906  DNAFLHGDLAEEVYMSIPQG 925



 Score = 89.0 bits (219), Expect(3) = 7e-59
 Identities = 44/83 (53%), Positives = 57/83 (68%)
 Frame = -2

Query: 473  SSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLIY 294
            +S +QVCKL KS YG KQASRQWY++LS  L  LG+    +  TLFT+ T +S+  LL+Y
Sbjct: 929  TSDNQVCKLTKSLYGLKQASRQWYEKLSQFLTTLGYAHMPSDPTLFTKQTKTSFTTLLVY 988

Query: 293  VDDIVLVGDHLSEFSHIKSKLDE 225
            VDDIVL GD L E    K+ L++
Sbjct: 989  VDDIVLTGDSLEEIEATKAHLNK 1011



 Score = 87.0 bits (214), Expect(3) = 7e-59
 Identities = 45/75 (60%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH-HND 46
            FGIK +GILK F GLEVAHS  GI+LCQR YCL+LL ++G+ G KP S PM+P    H+D
Sbjct: 1013 FGIKDIGILKYFLGLEVAHSQQGITLCQRKYCLDLLTETGSLGCKPSSVPMDPSIRLHHD 1072

Query: 45   DSVPFHHIACYRHLV 1
            DS P   I  YR LV
Sbjct: 1073 DSEPHTDITEYRALV 1087


>gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1346

 Score =  110 bits (274), Expect(3) = 1e-58
 Identities = 52/80 (65%), Positives = 62/80 (77%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            +HKA+G +ERYKARLV  GY Q E ID+F TFSPVAK+ TVRTL+AV  IK WH+HQL+V
Sbjct: 908  KHKANGQIERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKNWHLHQLDV 967

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L+ D YM +P G
Sbjct: 968  NNAFLHGDLQEDVYMKIPDG 987



 Score = 91.3 bits (225), Expect(3) = 1e-58
 Identities = 43/85 (50%), Positives = 60/85 (70%)
 Frame = -2

Query: 482  VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
            V  + P+ VCKL KS YG KQASR+WY++L+NLL+  G+ Q  +  +LFT    +++ AL
Sbjct: 988  VTCAKPNSVCKLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTAL 1047

Query: 302  LIYVDDIVLVGDHLSEFSHIKSKLD 228
            L+YVDDI+L GD + EF  IK+ LD
Sbjct: 1048 LVYVDDIILAGDSIDEFDRIKNVLD 1072



 Score = 75.5 bits (184), Expect(3) = 1e-58
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
            F IK+LG LK F GLEVAHS LGI++ QR YCL+LL+DSG  G KP STP++     H+ 
Sbjct: 1075 FKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSA 1134

Query: 45   DSVPFHHIACYRHLV 1
               P+  I+ YR +V
Sbjct: 1135 AGTPYADISGYRRIV 1149


>dbj|GAU50785.1| hypothetical protein TSUD_192210 [Trifolium subterraneum]
          Length = 1214

 Score =  114 bits (285), Expect(3) = 1e-58
 Identities = 53/80 (66%), Positives = 63/80 (78%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            +HKADGT+ERYKARLV  GY Q E ID+F TFSPVAK+ TVRTL+A+  IK WH+HQL+V
Sbjct: 761  KHKADGTIERYKARLVAKGYNQVEGIDYFETFSPVAKLTTVRTLLAIAAIKNWHLHQLDV 820

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L+ D YM +P G
Sbjct: 821  NNAFLHGDLQEDVYMKVPDG 840



 Score = 85.5 bits (210), Expect(3) = 1e-58
 Identities = 42/85 (49%), Positives = 57/85 (67%)
 Frame = -2

Query: 482  VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
            V    P+ VCKL KS YG KQASR+WY++L+ LL+  G+ Q  +  +LFT      + AL
Sbjct: 841  VQCDKPNLVCKLQKSLYGLKQASRKWYEKLTALLIIEGYTQAASDYSLFTLAKGDDFTAL 900

Query: 302  LIYVDDIVLVGDHLSEFSHIKSKLD 228
            L+YVDDI+L G+ +SEF  IK+ LD
Sbjct: 901  LVYVDDIILAGNSISEFDRIKAVLD 925



 Score = 77.0 bits (188), Expect(3) = 1e-58
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
            F IK+LG LK F GLEVAHS  GI++ QR YCL++L+DSG  GSKP  TPM+     H++
Sbjct: 928  FKIKNLGQLKYFLGLEVAHSKSGITISQRKYCLDMLKDSGLLGSKPAMTPMDTSIKLHSN 987

Query: 45   DSVPFHHIACYRHLV 1
              +P+  ++ YR +V
Sbjct: 988  AGIPYDDVSSYRRMV 1002


>gb|AJY78065.1| putative polyprotein [Glycine max]
          Length = 523

 Score =  110 bits (274), Expect(3) = 1e-58
 Identities = 52/80 (65%), Positives = 62/80 (77%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HKA+G +ERYKARLV  GY Q E ID+F TFSPVAK+ TVRTL+AV  IK WH+HQL+V
Sbjct: 59  KHKANGQIERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKNWHLHQLDV 118

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG L+ D YM +P G
Sbjct: 119 NNAFLHGDLQEDVYMKIPDG 138



 Score = 91.3 bits (225), Expect(3) = 1e-58
 Identities = 43/85 (50%), Positives = 60/85 (70%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V  + P+ VCKL KS YG KQASR+WY++L+NLL+  G+ Q  +  +LFT    +++ AL
Sbjct: 139 VTCAKPNSVCKLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTAL 198

Query: 302 LIYVDDIVLVGDHLSEFSHIKSKLD 228
           L+YVDDI+L GD + EF  IK+ LD
Sbjct: 199 LVYVDDIILAGDSIDEFDRIKNVLD 223



 Score = 75.5 bits (184), Expect(3) = 1e-58
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
           F IK+LG LK F GLEVAHS LGI++ QR YCL+LL+DSG  G KP STP++     H+ 
Sbjct: 226 FKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSA 285

Query: 45  DSVPFHHIACYRHLV 1
              P+  I+ YR +V
Sbjct: 286 AGTPYADISGYRRIV 300


>gb|PNX93071.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1455

 Score =  102 bits (254), Expect(3) = 2e-56
 Identities = 47/80 (58%), Positives = 59/80 (73%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            + KADG++ERYKARLV  GY Q E +D+F TFSPVAKM T+RT++A+  I  W +HQL+V
Sbjct: 988  KRKADGSIERYKARLVAKGYNQIEGVDYFETFSPVAKMTTIRTVLAIASINNWFVHQLDV 1047

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L  D YM +P G
Sbjct: 1048 NNAFLHGDLCEDVYMQIPQG 1067



 Score = 87.8 bits (216), Expect(3) = 2e-56
 Identities = 46/75 (61%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH-HND 46
            FGIK LG+LK F GLEVAHS  GISL QR YCL+LL ++G+ G KP S PM+PG   H+D
Sbjct: 1155 FGIKDLGVLKFFLGLEVAHSTKGISLSQRQYCLDLLAETGDLGCKPSSIPMDPGHKLHHD 1214

Query: 45   DSVPFHHIACYRHLV 1
            DS P   I  YR LV
Sbjct: 1215 DSAPHTDITGYRTLV 1229



 Score = 79.0 bits (193), Expect(3) = 2e-56
 Identities = 40/80 (50%), Positives = 54/80 (67%)
 Frame = -2

Query: 470  SPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLIYV 291
            S   VCKL+KS YG KQASR+WY++LS  L  L F    +  TLF + + +++ ALLIYV
Sbjct: 1072 SAGHVCKLVKSLYGLKQASRKWYEKLSQSLNELQFHSVPSDPTLFIKKSATTFTALLIYV 1131

Query: 290  DDIVLVGDHLSEFSHIKSKL 231
            DDIVL GD + E + +K+ L
Sbjct: 1132 DDIVLTGDSMDEINLVKTHL 1151


>dbj|GAU25332.1| hypothetical protein TSUD_375950 [Trifolium subterraneum]
          Length = 1298

 Score =  108 bits (269), Expect(3) = 7e-54
 Identities = 49/80 (61%), Positives = 65/80 (81%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            ++K+DGT+ER+KARLV  GY Q E +DFF+TFSPVAK+ TVR L+A   +KGW++HQL+V
Sbjct: 963  KYKSDGTIERHKARLVAKGYNQIEGLDFFDTFSPVAKLTTVRLLLATAAVKGWYLHQLDV 1022

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
            I AFLHG L+ + YMT+P G
Sbjct: 1023 INAFLHGGLQENVYMTIPEG 1042



 Score = 80.1 bits (196), Expect(3) = 7e-54
 Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPG-SHHND 46
            F IK LG LK F GLEVA S  GI++ QR YCL+LL+DSG  GSKP +TP++P     ND
Sbjct: 1104 FKIKDLGTLKYFLGLEVAQSREGITISQRKYCLDLLKDSGLLGSKPATTPLDPAIKISND 1163

Query: 45   DSVPFHHIACYRHLV 1
            DS P+  I+ YR ++
Sbjct: 1164 DSKPYEDISLYRRII 1178



 Score = 72.4 bits (176), Expect(3) = 7e-54
 Identities = 35/67 (52%), Positives = 49/67 (73%)
 Frame = -2

Query: 482  VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
            V SS P+QVCKLLKS YG KQASR+WY++L++LL+  G+ Q  A  +LFT  ++S + AL
Sbjct: 1043 VYSSKPNQVCKLLKSLYGLKQASRKWYEKLTSLLIKEGYSQSTADYSLFTLHSNSDFTAL 1102

Query: 302  LIYVDDI 282
            L  + D+
Sbjct: 1103 LFKIKDL 1109


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1115

 Score = 94.4 bits (233), Expect(3) = 1e-53
 Identities = 45/76 (59%), Positives = 55/76 (72%)
 Frame = -1

Query: 708 DGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNVI*AF 529
           +G++ERYKARLV  GY+Q E ID+F TFSPV KM TVR ++A+  I  WHI QL+V  AF
Sbjct: 643 NGSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQWHIQQLDVSNAF 702

Query: 528 LHGKLK*DAYMTMP*G 481
           LHG L  D YM +P G
Sbjct: 703 LHGDLLEDVYMELPQG 718



 Score = 92.0 bits (227), Expect(3) = 1e-53
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -2

Query: 470 SPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVALLIYV 291
           S S  CKL KS YG KQ+SR+WY++LSNLL++ G+KQ H+  +LFT+   S++ ALLIYV
Sbjct: 723 SSSHSCKLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSDHSLFTKRHGSAFTALLIYV 782

Query: 290 DDIVLVGDHLSEFSHIKSKLDEN 222
           DDIVL G+  +E + IK  L  N
Sbjct: 783 DDIVLTGNSAAEITRIKHILHSN 805



 Score = 73.9 bits (180), Expect(3) = 1e-53
 Identities = 37/61 (60%), Positives = 43/61 (70%)
 Frame = -1

Query: 222 FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSHHNDD 43
           F +K LG LK F G+EVAHS  GISLCQR YCL+LL DSG  G KP STPM+     +DD
Sbjct: 806 FHVKDLGQLKYFLGIEVAHSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDD 865

Query: 42  S 40
           +
Sbjct: 866 A 866


>gb|PNX98110.1| peptide transporter PTR2, partial [Trifolium pratense]
          Length = 1040

 Score =  104 bits (260), Expect(3) = 1e-53
 Identities = 47/80 (58%), Positives = 60/80 (75%)
 Frame = -1

Query: 720  RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
            + KADG+++RYKAR+V  GY Q E +D+F TFSPVAKM T+RT+ A+  I+ WHIHQL+V
Sbjct: 807  KRKADGSIDRYKARVVAKGYNQVEGVDYFQTFSPVAKMTTIRTVFAIASIQNWHIHQLDV 866

Query: 540  I*AFLHGKLK*DAYMTMP*G 481
              AFLHG L  D YM +P G
Sbjct: 867  DNAFLHGDLDEDVYMRIPQG 886



 Score = 82.4 bits (202), Expect(3) = 1e-53
 Identities = 42/92 (45%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
 Frame = -2

Query: 488  LRVPS----SSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITD 321
            +R+P     ++  QVCKL KS YG KQASRQWY++LS  L++ G+    +  TLFT+ T 
Sbjct: 881  MRIPQGLTGTTDKQVCKLRKSLYGLKQASRQWYEKLSKFLISTGYVHMPSDLTLFTKSTK 940

Query: 320  SSYVALLIYVDDIVLVGDHLSEFSHIKSKLDE 225
            +S+  LL+YVDDIVL  + ++E    KS+L +
Sbjct: 941  TSFTTLLVYVDDIVLTRNCMTEIQTTKSQLHQ 972



 Score = 72.8 bits (177), Expect(3) = 1e-53
 Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = -1

Query: 222  FGIKHLGILKCFCGLEVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEPGSH-HND 46
            FGIK +GILK    LEV+HS  GI+LCQR YCL+LL ++G  G KP S PM+P +  H+D
Sbjct: 974  FGIKDIGILKL---LEVSHSQQGITLCQRKYCLDLLTETGTLGCKPSSIPMDPSNRLHHD 1030

Query: 45   DSVPFHHI 22
            DS P  +I
Sbjct: 1031 DSEPHSNI 1038


>gb|PNX88255.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 439

 Score =  114 bits (286), Expect(3) = 7e-52
 Identities = 53/80 (66%), Positives = 66/80 (82%)
 Frame = -1

Query: 720 RHKADGTLERYKARLVTNGYTQTERIDFFNTFSPVAKMATVRTLIAVTEIKGWHIHQLNV 541
           +HK+DG++ERYKARLV  GY Q E +DFF+TFSPVAKM+TVR L+A+  IK WH+HQL+V
Sbjct: 251 KHKSDGSIERYKARLVAKGYNQIEGLDFFDTFSPVAKMSTVRILLALASIKHWHLHQLDV 310

Query: 540 I*AFLHGKLK*DAYMTMP*G 481
             AFLHG+LK D YMT+P G
Sbjct: 311 NNAFLHGELKEDVYMTVPEG 330



 Score = 84.3 bits (207), Expect(3) = 7e-52
 Identities = 44/81 (54%), Positives = 57/81 (70%)
 Frame = -2

Query: 482 VPSSSPSQVCKLLKSFYGPKQASRQWYDRLSNLLMNLGFKQGHAYRTLFTRITDSSYVAL 303
           V S  P+QVCKLLKS YG KQASR+WY+RL++LL+  G+ Q  A  +LFT   D+ + AL
Sbjct: 331 VNSPKPNQVCKLLKSLYGLKQASRKWYERLTSLLLQQGYTQSTADYSLFTYHKDNDFTAL 390

Query: 302 LIYVDDIVLVGDHLSEFSHIK 240
           LIYVDDI+     L+E +H K
Sbjct: 391 LIYVDDII-----LAEVAHSK 406



 Score = 55.1 bits (131), Expect(3) = 7e-52
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -1

Query: 177 EVAHSPLGISLCQR*YCLNLLEDSGNFGSKPVSTPMEP 64
           EVAHS  GIS+ QR YCL+LL+DSG  GSKP +TP++P
Sbjct: 401 EVAHSKQGISVSQRKYCLDLLKDSGLLGSKPAATPLDP 438