BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00029189
         (685 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   144   8e-63
dbj|GAU43011.1| hypothetical protein TSUD_28300 [Trifolium subte...   137   4e-59
dbj|GAU31928.1| hypothetical protein TSUD_271130, partial [Trifo...   136   6e-58
dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subt...   137   2e-57
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            142   3e-57
dbj|GAU29902.1| hypothetical protein TSUD_379930 [Trifolium subt...   134   3e-57
dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subt...   141   4e-57
dbj|GAU21581.1| hypothetical protein TSUD_35440 [Trifolium subte...   129   5e-57
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            128   6e-57
dbj|GAU37106.1| hypothetical protein TSUD_278930 [Trifolium subt...   137   6e-57
dbj|GAU36022.1| hypothetical protein TSUD_211600 [Trifolium subt...   131   2e-56
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   142   3e-56
dbj|GAU50131.1| hypothetical protein TSUD_192520 [Trifolium subt...   132   5e-56
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]            139   5e-56
dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subt...   137   7e-56
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   131   9e-56
dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subt...   134   2e-55
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   131   3e-55
dbj|GAU43961.1| hypothetical protein TSUD_283880 [Trifolium subt...   133   4e-55
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   136   4e-55

>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  144 bits (363), Expect(2) = 8e-63
 Identities = 65/118 (55%), Positives = 94/118 (79%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           ++GKG++K++I GIT  I+NVYYIP+LKNNLLSIG LQEKGL VVF+++ C++YH  +G+
Sbjct: 358 VVGKGNVKLRIGGITQVITNVYYIPELKNNLLSIGQLQEKGLTVVFKEDMCRVYHQERGV 417

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+  +M++NRM+  M ++++PTC K T  ED + LWH RYG+LS  GL+ L +K+MVR
Sbjct: 418 IMQCKMTANRMYVIMVDVVIPTCFKVTN-EDVTYLWHCRYGYLSQKGLKILEQKNMVR 474



 Score =  125 bits (313), Expect(2) = 8e-63
 Identities = 57/109 (52%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           RGR+  +KD+IECYHC K+GH+Q +CP W+E ANYA+ D  EE+LLMAH+   S D+   
Sbjct: 261 RGRQSFNKDNIECYHCHKLGHFQSDCPAWDEKANYAEFDEGEEMLLMAHSEKGSYDK--- 317

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                       KVWFLD+GC NHMCG ++WF+ LDE +R +V+LGD+S
Sbjct: 318 ------------KVWFLDSGCRNHMCGTKDWFFNLDEQFRISVKLGDNS 354


>dbj|GAU43011.1| hypothetical protein TSUD_28300 [Trifolium subterraneum]
          Length = 538

 Score =  137 bits (346), Expect(2) = 4e-59
 Identities = 64/118 (54%), Positives = 85/118 (72%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ ING  H IS+VYYIP LK NLLSIG +Q+K + +VF ++TCK YH  KGL
Sbjct: 328 VMGKGNVKLSINGRVHVISSVYYIPGLKTNLLSIGQIQQKNVTIVFNEDTCKAYHDEKGL 387

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  + MS+NRM+   A ++ P CL+    +D S LWH RYGHLS  GL TL+ KDMV+
Sbjct: 388 LFSTHMSANRMYVIKALVVTPRCLQAAK-KDVSQLWHNRYGHLSIKGLNTLTNKDMVK 444



 Score =  119 bits (298), Expect(2) = 4e-59
 Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           RGR   SK+ +ECY C K+GHYQ ECP W E ANYA+ + EEE+LLMA TN     E   
Sbjct: 231 RGRGRQSKELVECYKCHKLGHYQNECPTWGENANYAEFNDEEEMLLMAKTNCEEMKE--- 287

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                       ++WFLD+GCSNHM GN++W Y+ DE+YR +V+LGDDS
Sbjct: 288 ------------EIWFLDSGCSNHMIGNKDWMYEFDETYRDSVKLGDDS 324


>dbj|GAU31928.1| hypothetical protein TSUD_271130, partial [Trifolium subterraneum]
          Length = 747

 Score =  136 bits (342), Expect(2) = 6e-58
 Identities = 63/118 (53%), Positives = 89/118 (75%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ I+G  H I+ V+YIP LK+NLLSIG +Q+K + +VF+++ CKIYH  KGL
Sbjct: 333 VMGKGNVKLSIDGRIHVITGVFYIPGLKSNLLSIGQIQQKNVTIVFKNDICKIYHDDKGL 392

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  +QMS NRM+   A +I+P CL+ T  +D S LWH RYGHLS  GL TL++K+MV+
Sbjct: 393 LFTTQMSQNRMYVVNANVIMPKCLQVTK-KDWSQLWHSRYGHLSIKGLNTLARKEMVK 449



 Score =  117 bits (292), Expect(2) = 6e-58
 Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDI-EEELLLMAHTNSNSGDELVL 508
           RGR   ++++IEC+ C K+GHY+ ECP+WE  ANYA+ + EEE LLMA TN+        
Sbjct: 236 RGRGRVARETIECFKCHKLGHYRNECPDWEGNANYAEFLDEEETLLMARTNA-------- 287

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                  D +  + WFLD+GCSNHM GN++W Y+LDESYR T +LGDDS
Sbjct: 288 -------DESKHETWFLDSGCSNHMVGNKDWLYELDESYRDTFKLGDDS 329


>dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subterraneum]
          Length = 1126

 Score =  137 bits (346), Expect(2) = 2e-57
 Identities = 66/118 (55%), Positives = 85/118 (72%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKGS+K+ I G    I++VYY+P L+NNLLSIG LQ+K L ++F DNTCKI+H  +GL
Sbjct: 245 VMGKGSVKICIEGRVCVITDVYYLPNLRNNLLSIGQLQQKNLTIIFSDNTCKIFHEERGL 304

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ + M+ NRM+  MA +I PTCLK    E    LWH RYGHLS  GL  L+KKDMV+
Sbjct: 305 IVSTPMTVNRMYILMAPVITPTCLKMNH-ESEGYLWHCRYGHLSLKGLNVLAKKDMVK 361



 Score =  113 bits (283), Expect(2) = 2e-57
 Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
 Frame = -2

Query: 684 RGR-KPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD---DIEEELLLMAHTNSNSGDE 517
           RGR    SK+ +ECY C K+GHYQYECP WEE AN+A    ++ EE+L+MAH   ++   
Sbjct: 144 RGRINSVSKEYVECYKCHKLGHYQYECPTWEENANFAAPEFNVNEEMLMMAHNQHDT--- 200

Query: 516 LVLMAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                      +   KVWFLD+GCSNHM G ++W +  D+S+R TV+LGDDS
Sbjct: 201 -----------TTANKVWFLDSGCSNHMIGTKDWLFDFDDSFRETVKLGDDS 241


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  142 bits (357), Expect(2) = 3e-57
 Identities = 68/118 (57%), Positives = 90/118 (76%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG +K+ I GIT  IS VYY+P LKNNLLSIG LQ+K L +VF+++ CK++H  +GL
Sbjct: 336 VMGKGKLKLYIGGITQVISEVYYLPGLKNNLLSIGQLQQKNLTIVFKNDICKVFHEERGL 395

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ + MS+NRMF   A +++P CL+TT  E  S LWH+RYGHLS+ GL TL KK+MVR
Sbjct: 396 IMSTPMSANRMFVIKATVLVPMCLQTTN-EIDSQLWHKRYGHLSYKGLNTLVKKEMVR 452



 Score =  108 bits (271), Expect(2) = 3e-57
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEELLLMAHTNSNSGDELVLM 505
           RGR+  SK+ +ECY C K+GHYQ ECP+WE+  N           + +   N  +E++LM
Sbjct: 236 RGRQNNSKEHVECYKCHKLGHYQSECPSWEQDPN-----------VNYAEFNEHEEMLLM 284

Query: 504 AYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS--HYYGK 346
             ++    A  +VW+LD+GCSNHM GN+ W +  D+S+R +V+LGDDS  H  GK
Sbjct: 285 TKQDATIHAKTEVWYLDSGCSNHMIGNKEWLFDFDDSFRESVKLGDDSKMHVMGK 339


>dbj|GAU29902.1| hypothetical protein TSUD_379930 [Trifolium subterraneum]
          Length = 1277

 Score =  134 bits (336), Expect(2) = 3e-57
 Identities = 62/118 (52%), Positives = 88/118 (74%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ I+G  H I+ V+YIP LK+NLL IG +Q+K + +VF+++ CKIYH  KGL
Sbjct: 333 VMGKGNVKLSIDGRIHVITGVFYIPGLKSNLLRIGQIQQKNVTIVFKNDICKIYHDDKGL 392

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  +QMS NRM+   A +I+P CL+ T  +D S LWH RYGHLS  GL TL++K+MV+
Sbjct: 393 LFTTQMSPNRMYVVNANVIMPKCLQVTK-KDWSQLWHSRYGHLSIKGLNTLARKEMVK 449



 Score =  117 bits (292), Expect(2) = 3e-57
 Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDI-EEELLLMAHTNSNSGDELVL 508
           RGR   ++++IEC+ C K+GHY+ ECP WE  ANY + + EEE LLMA TN+        
Sbjct: 236 RGRGRVARETIECFKCHKLGHYRNECPEWEGNANYVEFLDEEETLLMARTNA-------- 287

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                  D +  + WFLD+GCSNHM GN++W Y+LDESYR TV+LGDDS
Sbjct: 288 -------DESKHETWFLDSGCSNHMVGNKDWLYELDESYRDTVKLGDDS 329


>dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subterraneum]
          Length = 1067

 Score =  141 bits (355), Expect(2) = 4e-57
 Identities = 64/119 (53%), Positives = 90/119 (75%)
 Frame = -3

Query: 359 TIMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKG 180
           ++MGKG++K+ +NG  H ISNVYY+P L  NLLS+G LQ+K + V+F+++TC+ YH  KG
Sbjct: 328 SVMGKGNVKLFMNGSVHVISNVYYLPGLNTNLLSVGQLQQKSVTVIFKNDTCRAYHDEKG 387

Query: 179 LIIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           LI  +QMS+NRM+   A +++P CL+T+  ED + LWH RYGHLS  GL+ LS KDMV+
Sbjct: 388 LIFSTQMSANRMYTLTAPVMIPMCLQTSN-EDQTQLWHNRYGHLSVNGLKLLSSKDMVK 445



 Score =  109 bits (272), Expect(2) = 4e-57
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           RGR   +K+SIEC+ C K+GHY+ ECP+W E ANYA+ D EEE LLMA T+ +       
Sbjct: 231 RGRGRQNKESIECFKCHKLGHYKNECPDWGENANYAEFDYEEETLLMARTDQDG------ 284

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
              KE       + W++D+GCSNHM GN++W Y  D S+R +VRLG+D+
Sbjct: 285 -VIKE-------ETWYVDSGCSNHMIGNKDWLYDFDPSFRDSVRLGNDA 325


>dbj|GAU21581.1| hypothetical protein TSUD_35440 [Trifolium subterraneum]
          Length = 1283

 Score =  129 bits (325), Expect(2) = 5e-57
 Identities = 61/118 (51%), Positives = 87/118 (73%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ I+G  H I+ V+YIP LK+NLLSIG +Q+K + +VF+++  KIYH  KGL
Sbjct: 304 VMGKGNVKLSIDGRIHVITGVFYIPGLKSNLLSIGQIQQKNVTIVFKNDIGKIYHDDKGL 363

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  +QMS NRM+     +I+P CL+ T  +D S LWH RYGHLS  GL TL++K+MV+
Sbjct: 364 LFTTQMSPNRMYVVNVNVIMPKCLQVTK-KDWSQLWHSRYGHLSIKGLNTLARKEMVK 420



 Score =  120 bits (301), Expect(2) = 5e-57
 Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDI-EEELLLMAHTNSNSGDELVL 508
           RGR   ++++IEC+ C K+GHY+ ECP+WE  ANYA+ + EEE LLMA TN+N       
Sbjct: 207 RGRGRVARETIECFKCHKLGHYRSECPDWEGNANYAEFLDEEETLLMARTNTNESKH--- 263

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                       + WFLD+GCSNHM GN++W Y+LDESYR TV+LGDDS
Sbjct: 264 ------------ETWFLDSGCSNHMVGNKDWLYELDESYRDTVKLGDDS 300


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  128 bits (321), Expect(2) = 6e-57
 Identities = 63/119 (52%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           ++GKG+++M++NG T  ISNVYYIP+LKNNLLSIG LQ+KGL ++ +   C IYH +KGL
Sbjct: 338 VIGKGNVRMRVNGFTQVISNVYYIPELKNNLLSIGQLQDKGLSILIQHGKCMIYHPTKGL 397

Query: 176 IIDSQMSSNRMFRTMAEMI--LPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMV 6
           I+++ MS N+MF  +A M+    TC +    E+ S LWH R+GHLS+ GL TL  K MV
Sbjct: 398 IMETIMSGNKMFCLVASMMPNESTCFQNVS-ENESYLWHCRFGHLSYQGLRTLFYKKMV 455



 Score =  121 bits (304), Expect(2) = 6e-57
 Identities = 56/108 (51%), Positives = 76/108 (70%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEELLLMAHTNSNSGDELVLM 505
           RGR+P +K  IEC+ C ++GHYQYECP+WE+ ANYA+  E+E            +E++LM
Sbjct: 239 RGRQPYNKALIECFRCHQLGHYQYECPDWEQKANYAEFEEKE------------EEILLM 286

Query: 504 AYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
           +Y E K     ++WFLD+GCSNHM GN+ WF  LDES+R TV+LG+DS
Sbjct: 287 SYVEIKHDEKEEMWFLDSGCSNHMSGNKKWFSDLDESFRHTVKLGNDS 334


>dbj|GAU37106.1| hypothetical protein TSUD_278930 [Trifolium subterraneum]
          Length = 1013

 Score =  137 bits (345), Expect(2) = 6e-57
 Identities = 67/117 (57%), Positives = 87/117 (74%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG+IK  I G  H I+NV+YIP LK+NLLSIG +Q+K + +VF+++ CKIYH  KGL
Sbjct: 331 VMGKGNIKFSIAGKIHVITNVFYIPGLKSNLLSIGQIQQKHVTIVFKNDLCKIYHDDKGL 390

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMV 6
           +  + MS NRM+   A +I+P CL+ T  +D S LWHQRYGHLS  GL TL+KKDMV
Sbjct: 391 LFTTHMSPNRMYVVNATVIVPNCLQVTK-KDWSQLWHQRYGHLSIKGLNTLAKKDMV 446



 Score =  112 bits (280), Expect(2) = 6e-57
 Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEE-LLLMAHTNSNSGDELVL 508
           RGR   SK+++EC+ C K+ HY+ ECP+WEE ANYA+  EEE  LLMA TN+        
Sbjct: 234 RGRGRVSKENVECFKCHKLAHYKNECPDWEENANYAEFFEEEETLLMARTNT-------- 285

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                  +    + WFLD+GCSNHM GN++W Y+ D SYR +V+LGDDS
Sbjct: 286 -------EELRNETWFLDSGCSNHMVGNKDWLYEFDGSYRDSVKLGDDS 327


>dbj|GAU36022.1| hypothetical protein TSUD_211600 [Trifolium subterraneum]
          Length = 1423

 Score =  131 bits (329), Expect(2) = 2e-56
 Identities = 62/118 (52%), Positives = 88/118 (74%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ I+G  H I+ V+YIP LK+NLLSIG +Q+K + +VF+++ CKIYH  KGL
Sbjct: 333 VMGKGNVKLSIDGKIHVITGVFYIPGLKSNLLSIGQIQQKNVTIVFKNDICKIYHDDKGL 392

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  +QMS NRM+   A +I+P  L+ T  +D S LWH RYGHLS  GL TL++K+MV+
Sbjct: 393 LFTTQMSPNRMYVVNANVIMPKRLQVTK-KDWSQLWHNRYGHLSIKGLNTLARKEMVK 449



 Score =  117 bits (292), Expect(2) = 2e-56
 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = -2

Query: 681 GRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDI-EEELLLMAHTNSNSGDELVLM 505
           GR   ++++IEC+ C K+GHY+ ECP+WE  ANYA+ + EEE LLMA TN+         
Sbjct: 237 GRGRVAREAIECFKCHKLGHYRKECPDWEGNANYAEFLDEEETLLMARTNT--------- 287

Query: 504 AYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                 D +  + WFLD+GCSNHM GN++W Y+LDESYR TV+LGDDS
Sbjct: 288 ------DESKHETWFLDSGCSNHMVGNKDWLYELDESYRDTVKLGDDS 329


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  142 bits (357), Expect(2) = 3e-56
 Identities = 71/118 (60%), Positives = 90/118 (76%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           I+GKG++K+ I GIT  IS+VYYIP LKNNLLSIG LQ+K L +VF+ + CK+YH  +GL
Sbjct: 329 ILGKGNLKLCIGGITQVISDVYYIPGLKNNLLSIGQLQQKDLTIVFKQDFCKVYHPQRGL 388

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ ++MS+NRM+   A +I+P CLKT    D + LWH RYGHLSF GL TL KKDMVR
Sbjct: 389 IMATKMSANRMYIIYAPVIIPMCLKTVKM-DNNELWHCRYGHLSFKGLNTLVKKDMVR 445



 Score =  105 bits (262), Expect(2) = 3e-56
 Identities = 54/110 (49%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEW-ANYAD-DIEEELLLMAHTNSNSGDELV 511
           RGR   +K++IECY C K+GHYQ+ECP WEE  ANYA  D  EE+LLMA     +     
Sbjct: 230 RGRGRVNKENIECYRCHKLGHYQHECPTWEEKDANYAAYDSHEEILLMAKHGIET----- 284

Query: 510 LMAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                + +D    +VWFLD+GCSNHM G R W +  D++ R +V+LGDDS
Sbjct: 285 -----DARD----EVWFLDSGCSNHMVGTREWLFDFDDNIRESVKLGDDS 325


>dbj|GAU50131.1| hypothetical protein TSUD_192520 [Trifolium subterraneum]
          Length = 1197

 Score =  132 bits (333), Expect(2) = 5e-56
 Identities = 62/118 (52%), Positives = 85/118 (72%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ ING  H IS+VYYIP LK NLLSIG +Q+K + +VF+++TCK Y+  KGL
Sbjct: 311 VMGKGNVKLSINGRVHVISSVYYIPGLKTNLLSIGQIQQKNVTIVFKEDTCKAYYDEKGL 370

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           +  + MS+NRM+   A ++ P CL+    +D S LWH  YGHLS  GL TL+ KDMV+
Sbjct: 371 LFSTHMSANRMYVIKALVVTPRCLQAAK-KDVSQLWHNIYGHLSIKGLNTLTNKDMVK 427



 Score =  114 bits (284), Expect(2) = 5e-56
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           RGR   SK+ +ECY C K+GHYQ ECP   E ANYA+ + EEE+LLMA TN     E   
Sbjct: 214 RGRGRQSKELVECYKCHKLGHYQNECPTRGENANYAEFNDEEEMLLMAKTNCEEVKE--- 270

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                       ++WFLD+GCSNHM GN++W Y+ DE+YR +V+LGDDS
Sbjct: 271 ------------EIWFLDSGCSNHMIGNKDWMYEFDETYRDSVKLGDDS 307


>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
          Length = 912

 Score =  139 bits (349), Expect(2) = 5e-56
 Identities = 62/119 (52%), Positives = 90/119 (75%)
 Frame = -3

Query: 359 TIMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKG 180
           T+MG+G++K+ ++G  H I+NVYY+P L NNLLS+G LQ++GL  VF++N C+++H  KG
Sbjct: 328 TVMGRGNVKLNMDGKIHVITNVYYLPGLSNNLLSVGQLQQRGLTTVFKNNMCQLFHEEKG 387

Query: 179 LIIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           LI+ ++M+ N+M+   A MILP CL+ T  E+ + LWHQRY HLSF GL+TL  K MV+
Sbjct: 388 LILTTKMTFNKMYIVKASMILPNCLQATALEETT-LWHQRYAHLSFQGLKTLITKQMVK 445



 Score =  107 bits (268), Expect(2) = 5e-56
 Identities = 50/107 (46%), Positives = 70/107 (65%)
 Frame = -2

Query: 681 GRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEELLLMAHTNSNSGDELVLMA 502
           GR   SK+SIEC+ C K+GHY+ ECP+WE  ANYA+  EEE             E++LMA
Sbjct: 234 GRGWQSKESIECFKCHKLGHYRNECPDWE--ANYAEHREEE-------------EMLLMA 278

Query: 501 YKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
           Y   K+  I  +W++D+GCSNHM G + WF+  D+ +R +V+LG+DS
Sbjct: 279 YSYTKEDFIKGMWYIDSGCSNHMTGTKEWFFDFDDKFRESVKLGNDS 325


>dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subterraneum]
          Length = 1117

 Score =  137 bits (346), Expect(2) = 7e-56
 Identities = 65/118 (55%), Positives = 88/118 (74%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ + G    IS+VYY+P LKNNLLSIG LQ+K L +VF  + CKI+H  KGL
Sbjct: 332 VMGKGNVKLYLAGQVTVISDVYYLPDLKNNLLSIGQLQQKNLTIVFSKDVCKIFHEGKGL 391

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ +QM+ NRM+  +A ++LPTC K T  +D   LWH RYGHLSF GL TL+K++MV+
Sbjct: 392 IVTTQMTVNRMYIILAPVMLPTCFKVTN-KDEGHLWHCRYGHLSFKGLNTLAKREMVK 448



 Score =  108 bits (270), Expect(2) = 7e-56
 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEE--ELLLMA--HTNSNSGDE 517
           RGR    K+ +ECY C K+GHYQ ECP WEE AN+A +  E  E+LLM   HT++N+ D+
Sbjct: 233 RGRNTIPKEHVECYKCHKLGHYQNECPTWEENANFAYEFNEHEEILLMTQQHTHTNTSDQ 292

Query: 516 LVLMAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                           VWFLD+GCSNHM G + W +  D+ +R TV++GD+S
Sbjct: 293 ----------------VWFLDSGCSNHMIGTKEWLFNFDDKFRETVKIGDNS 328


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  131 bits (329), Expect(2) = 9e-56
 Identities = 61/122 (50%), Positives = 93/122 (76%), Gaps = 3/122 (2%)
 Frame = -3

Query: 359 TIMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKG 180
           ++MGKGSI++K++G+T  IS+VY++P+L+NNLLSIG LQEKGL ++ +   CKIYHS KG
Sbjct: 346 SVMGKGSIRLKVDGLTQVISDVYFVPELRNNLLSIGQLQEKGLAILIQHGVCKIYHSKKG 405

Query: 179 LIIDSQMSSNRMFRTMAEMIL---PTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDM 9
           LI+ + M++NRMF  +A +++    TC++ +  +D S LWH RY HL++ GL+TL  + M
Sbjct: 406 LIMQTPMTANRMFVLLANVVVTDFSTCMQASS-DDLSHLWHCRYSHLNYKGLKTLHYRKM 464

Query: 8   VR 3
           V+
Sbjct: 465 VK 466



 Score =  114 bits (286), Expect(2) = 9e-56
 Identities = 53/108 (49%), Positives = 75/108 (69%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEELLLMAHTNSNSGDELVLM 505
           RGR+  +K  +EC+ C K+GH+QYECP+WE+  NYA+ +EEE            DEL+LM
Sbjct: 249 RGRQSFNKAVVECFKCHKLGHFQYECPSWEKRVNYAE-LEEE------------DELLLM 295

Query: 504 AYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
           A+ E  DS    VWFLD+GCSNHMC N++WF  +DE +R +V+LG+++
Sbjct: 296 AHVERNDSKPEDVWFLDSGCSNHMCCNKDWFTNIDEEFRHSVKLGNNA 343


>dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subterraneum]
          Length = 1323

 Score =  134 bits (338), Expect(2) = 2e-55
 Identities = 63/118 (53%), Positives = 87/118 (73%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ + G    IS+VYY+P LKNNLLSIG LQ+K L +VF  + CKI+H  KGL
Sbjct: 336 VMGKGNVKLYLAGQVTVISDVYYLPDLKNNLLSIGQLQQKNLTIVFSKDVCKIFHEGKGL 395

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ +QM+ NRM+  +A ++LP C K +  +D   LWH RYGHLSF GL TL+K++MV+
Sbjct: 396 IVTTQMTVNRMYIILAPVMLPACFKVSN-QDEGHLWHCRYGHLSFKGLNTLAKREMVK 452



 Score =  110 bits (274), Expect(2) = 2e-55
 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEE--ELLLMA--HTNSNSGDE 517
           RGR   SK+ +ECY C ++GHYQ ECP WEE AN+A +  E  E+LLM   HT++N+ D+
Sbjct: 237 RGRNTISKEHVECYKCHRLGHYQNECPTWEENANFAYEFNEHEEILLMTQQHTHTNTSDQ 296

Query: 516 LVLMAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                           VWFLD+GCSNHM G + W +  D+ +R TV+LGD+S
Sbjct: 297 ----------------VWFLDSGCSNHMIGTKEWLFNFDDKFRETVKLGDNS 332


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  131 bits (329), Expect(2) = 3e-55
 Identities = 62/120 (51%), Positives = 90/120 (75%), Gaps = 2/120 (1%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG+++++ NG+T   ++VYYIP+LKNNLLSIG LQEKG+ ++ ++  C+IYH  KGL
Sbjct: 335 VMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVAILIQNGMCQIYHPRKGL 394

Query: 176 IIDSQMSSNRMFRTMAEMI--LPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I+ ++MS+NRMF  +A M+     C +T   ED + LWH RYGHLSF GL+TL  ++MV+
Sbjct: 395 IMQTKMSANRMFVILANMLPQASACFQTVS-EDNTHLWHCRYGHLSFKGLKTLQYRNMVK 453



 Score =  112 bits (281), Expect(2) = 3e-55
 Identities = 52/108 (48%), Positives = 73/108 (67%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYADDIEEELLLMAHTNSNSGDELVLM 505
           R R+  +K  +ECY C K+GH+QYECP WE+ ANYA+  E+E             E++LM
Sbjct: 237 RSRQQFNKALVECYKCHKLGHFQYECPEWEKGANYAELDEKE-------------EMLLM 283

Query: 504 AYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
           AY E  +S + +VWFLD+GCSNHM GN+ WF  L+E +R +V+LG++S
Sbjct: 284 AYVELNNSKMEEVWFLDSGCSNHMSGNKKWFIDLNEQFRQSVKLGNNS 331


>dbj|GAU43961.1| hypothetical protein TSUD_283880 [Trifolium subterraneum]
          Length = 1273

 Score =  133 bits (335), Expect(2) = 4e-55
 Identities = 61/118 (51%), Positives = 87/118 (73%)
 Frame = -3

Query: 356 IMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKGL 177
           +MGKG++K+ +NG  H ISNVYY+P L  NLLS+G LQ+K + ++F+++ C+ YH  KGL
Sbjct: 329 VMGKGNVKLFMNGSIHVISNVYYLPGLNTNLLSVGQLQQKNVTIIFKNDACRAYHDEKGL 388

Query: 176 IIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMVR 3
           I  +QMS+N M+   A +I+P CL+T+  ED + LWH RYGHLS  GL+ L+ KDMV+
Sbjct: 389 IFSTQMSANIMYILAAPVIVPMCLQTS-IEDKTQLWHNRYGHLSVKGLKILNSKDMVK 445



 Score =  110 bits (274), Expect(2) = 4e-55
 Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           RGR   +K+SIEC+ C K+GHY+ ECP+W E ANYA+ D EEE LLMA T+ +       
Sbjct: 231 RGRGRQNKESIECFKCHKLGHYKNECPDWGENANYAEFDYEEETLLMARTDQDG------ 284

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
              KE         W+LD+GCSNHM GN++W Y+ D S+R +VRLG+D+
Sbjct: 285 -VIKEEN-------WYLDSGCSNHMIGNKDWLYEFDPSFRDSVRLGNDA 325


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  136 bits (342), Expect(2) = 4e-55
 Identities = 63/118 (53%), Positives = 87/118 (73%)
 Frame = -3

Query: 359 TIMGKGSIKMKINGITHTISNVYYIPKLKNNLLSIG*LQEKGLKVVFEDNTCKIYHSSKG 180
           ++MGKG++K+ + G    I++VYY+P L+NNLLSIG LQ+K L +VF  +TCKI+H  +G
Sbjct: 312 SVMGKGNVKISLQGKISVITDVYYLPNLRNNLLSIGQLQQKNLTIVFSKDTCKIFHEERG 371

Query: 179 LIIDSQMSSNRMFRTMAEMILPTCLKTTGCEDASLLWHQRYGHLSFIGLETLSKKDMV 6
           LI+ + M+ NRM+  +  +I P+CLKT    + S LWH RYGHLSF GL TL+KKDMV
Sbjct: 372 LIVSTPMTVNRMYILLCPVITPSCLKTAHDSEGS-LWHHRYGHLSFKGLHTLAKKDMV 428



 Score =  107 bits (267), Expect(2) = 4e-55
 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = -2

Query: 684 RGRKPPSKDSIECYHCGKMGHYQYECPNWEEWANYAD-DIEEELLLMAHTNSNSGDELVL 508
           R     SK+ +ECY C K+GHYQ ECP WEE AN+A+ D  EE+L+MA   SN       
Sbjct: 216 RSAASTSKEFVECYRCHKLGHYQNECPTWEENANFAEFDEHEEMLMMAQNQSNVNTN--- 272

Query: 507 MAYKEGKDSAILKVWFLDNGCSNHMCGNRNWFYKLDESYRTTVRLGDDS 361
                       +VWFLD+GCSNHM G + W +  D+++R TV+LGD+S
Sbjct: 273 ------------QVWFLDSGCSNHMIGTKEWLFDFDDTFRETVKLGDNS 309