BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00025890
         (880 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subt...   297   4e-94
dbj|GAU11845.1| hypothetical protein TSUD_75960 [Trifolium subte...   269   4e-85
dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subt...   269   2e-84
dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subt...   250   5e-72
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]           248   2e-71
dbj|GAU22731.1| hypothetical protein TSUD_138560 [Trifolium subt...   230   6e-70
dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subt...   244   7e-70
dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subte...   230   1e-66
dbj|GAU35137.1| hypothetical protein TSUD_394630 [Trifolium subt...   219   7e-64
gb|PNX66050.1| ribonuclease H, partial [Trifolium pratense]           193   9e-58
gb|PNY17625.1| ribonuclease H [Trifolium pratense]                    191   4e-57
dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subt...   187   1e-53
gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    196   6e-53
gb|PNX91672.1| ribonuclease H [Trifolium pratense]                    169   7e-48
dbj|GAU50246.1| hypothetical protein TSUD_188980 [Trifolium subt...   171   4e-46
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    173   5e-45
dbj|GAU12283.1| hypothetical protein TSUD_141910 [Trifolium subt...   171   4e-44
dbj|GAU18899.1| hypothetical protein TSUD_228890 [Trifolium subt...   169   1e-43
dbj|GAU47648.1| hypothetical protein TSUD_27720 [Trifolium subte...   163   9e-43
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...   164   8e-42

>dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score =  297 bits (761), Expect = 4e-94
 Identities = 142/297 (47%), Positives = 190/297 (63%), Gaps = 5/297 (1%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            LADQV YVDIHD+ MRV DVYT+ +WNFN+LYT IP+ + + +   PVCLNS+V DR  W
Sbjct: 138  LADQVPYVDIHDLQMRVRDVYTDNKWNFNLLYTTIPADVMDHLKRLPVCLNSQVVDRYTW 197

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILE-----LVVEIACTRKNKIPYMVSYA*SL 533
            KGNL+G+                F +  T  +      V  I    K K     +   +L
Sbjct: 198  KGNLNGLYTAKEGYYWLNR----FSFSDTATDDISWNSVWHIPAPEKIKFFIWSALHNAL 253

Query: 532  PIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEW 353
            P + +L HRG+LQ+N+CPRCN+  +S  HCLR C+F  RFW +IGF    +FQ +NL++W
Sbjct: 254  PTKSMLSHRGLLQANLCPRCNIEEESTLHCLRNCEFIKRFWKAIGFLGQTFFQGDNLNDW 313

Query: 352  VRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAP 173
            +R SI+G   FLFM+A+WW+W  RN+LC  NE ++  +L  N  N A L+  CF K    
Sbjct: 314  LRNSIDGPSSFLFMAAVWWIWCARNQLCMDNEAISYFTLRTNTENLAQLLRMCFIKQNIS 373

Query: 172  SSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
            S+ ++V WNA+ G+ ++LNVDGSS+GNP ISG GGL RNS GAW+HG+ GNIG  NI
Sbjct: 374  STATMVRWNAHGGIGMILNVDGSSIGNPGISGFGGLIRNSDGAWVHGFAGNIGHLNI 430


>dbj|GAU11845.1| hypothetical protein TSUD_75960 [Trifolium subterraneum]
          Length = 386

 Score =  269 bits (688), Expect = 4e-85
 Identities = 134/299 (44%), Positives = 176/299 (58%), Gaps = 7/299 (2%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           LA+QV YVDIHD++MRV DVY +G WNFN LYT +P  I ER+   P+CLN  + D   W
Sbjct: 33  LANQVMYVDIHDLEMRVRDVYIDGIWNFNALYTALPMEIKERLISFPICLNPSINDCYTW 92

Query: 697 KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVV-------EIACTRKNKIPYMVSYA* 539
           KGNL GI                 ++ F+     V        +    K K         
Sbjct: 93  KGNLQGIYTARDGYHWLN------RYAFSANPTSVVSWSWLWHLPAPEKIKFFIWTLLHN 146

Query: 538 SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLH 359
           SLP R++L HRG++  N+CPRCN+  ++  HCLR CDF    W S+GFTD  +FQE +  
Sbjct: 147 SLPTRDMLTHRGIIHGNMCPRCNIHVETDLHCLRDCDFVYTIWKSLGFTDHNFFQEVDSS 206

Query: 358 EWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYT 179
            W+R  ++   +FLFM+AIWW+WRTRN LC  NE V   SL +  ++YA L+  C   Y 
Sbjct: 207 SWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELVPQFSLKMRIVDYALLLKNCHFNYQ 266

Query: 178 APSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
             + P +V WNA  G  ++LNVD SS+GNP ISG GGL  N+ GAWIHG+ GN+G +NI
Sbjct: 267 VTTLPKIVRWNALGGTSMILNVDRSSIGNPGISGFGGLICNAYGAWIHGFFGNLGVTNI 325


>dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subterraneum]
          Length = 440

 Score =  269 bits (688), Expect = 2e-84
 Identities = 132/298 (44%), Positives = 182/298 (61%), Gaps = 6/298 (2%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           LA+QV YVDIHD+ MRV DVY +G++N N LYT IP  I   +NL P+CLN  VADR  W
Sbjct: 33  LANQVLYVDIHDLQMRVRDVYIDGKFNLNSLYTPIPPEIVNHLNLLPICLNPLVADRYTW 92

Query: 697 KGNLDGIXXXXXXXXXXXXXTC*------FKW*FTILELVVEIACTRKNKIPYMVSYA*S 536
           KGNL+GI                        W       +  I    K K     +   +
Sbjct: 93  KGNLNGIYTARDGYHWLNRIESTNNSIEDISW-----SWLWHIEAPEKIKFFLWTALHNA 147

Query: 535 LPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHE 356
           LP R +L HR +L  +VCPR ++A ++I HCLR C+F    W +IGFTD  +F  +NL+ 
Sbjct: 148 LPTRAMLSHRRLLSVHVCPRSDIAEETIMHCLRDCEFVKHLWKTIGFTDQTFFHGDNLYA 207

Query: 355 WVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTA 176
           W+R+  +   +F+F++A+WW+WR RNKLC ANE V+  +++    +YA L+  C+++  +
Sbjct: 208 WLRKGCDSPSMFMFLAALWWIWRARNKLCLANELVSPFTISRCIEDYALLVKKCYSQQKS 267

Query: 175 PSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
             +  +V WNA+ G +++LNVDGSS+GNP I G GGL RNS GAWI G+ GNIGFSNI
Sbjct: 268 TLANRLVRWNAHDGTDMILNVDGSSIGNPEIYGFGGLIRNSHGAWIRGFAGNIGFSNI 325


>dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subterraneum]
          Length = 1200

 Score =  250 bits (639), Expect = 5e-72
 Identities = 123/299 (41%), Positives = 172/299 (57%), Gaps = 7/299 (2%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            +A+ V +VDIHD++MRV DVY +G W FN LYT +   I E +N   + LN  V D   W
Sbjct: 848  IANLVMFVDIHDLEMRVRDVYKDGMWLFNSLYTTLSQEIKENLNFITISLNPSVNDCYTW 907

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVV-------EIACTRKNKIPYMVSYA* 539
            KGNL+GI             +      F+   + V        ++   K K  +      
Sbjct: 908  KGNLNGIYTARDGYAWLNRHS------FSATTISVASWSWLWHVSAPEKLKFFFWTMLHN 961

Query: 538  SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLH 359
            SLP R++L HRG++  N+CPRC+  A++  HCLR CDF  R W SIGF D  +FQ  +++
Sbjct: 962  SLPTRDMLAHRGIITRNLCPRCSNHAETTIHCLRDCDFVNRIWKSIGFLDQNFFQGVDVY 1021

Query: 358  EWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYT 179
             W+   +N   + LF++ IWW+WR RN +C  +E V+  S  +  M+YA L+  C+    
Sbjct: 1022 AWLHNGLNSPTMMLFIAGIWWIWRARNAMCLDSEMVSFWSQKLRIMDYALLLKNCYFSTH 1081

Query: 178  APSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
              S+   V WNA  G  ++LNVDGSS+GNP ISG GGL RN+ GAWIHG+ GN+G +NI
Sbjct: 1082 EISTTKFVKWNALGGTGLILNVDGSSIGNPGISGFGGLIRNADGAWIHGFFGNLGVTNI 1140


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score =  248 bits (634), Expect = 2e-71
 Identities = 121/255 (47%), Positives = 159/255 (62%), Gaps = 6/255 (2%)
 Frame = -1

Query: 880  RLADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLA 701
            +LAD+V YVDIHD++M V DVYT+G WNFNMLYTNIP+A+ + + + PVCLNS+VAD   
Sbjct: 892  KLADKVLYVDIHDLEMSVKDVYTDGNWNFNMLYTNIPTAVTDHLKMIPVCLNSQVADCYT 951

Query: 700  WKGNLDGIXXXXXXXXXXXXXTC*------FKW*FTILELVVEIACTRKNKIPYMVSYA* 539
            WKGNL+GI                        W +     +  I+   K K     +   
Sbjct: 952  WKGNLNGIYSARDGYFWLNRNEFAGNDTDSISWTW-----LWNISAPEKLKFFLWTALHN 1006

Query: 538  SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLH 359
            SLP RE+LCHR MLQ+N CPRCN   ++  HCLR CDFA R W SIGFTD  +++EN+L+
Sbjct: 1007 SLPTREMLCHRNMLQANHCPRCNQEIETTLHCLRDCDFAIRLWHSIGFTDQSFYRENDLY 1066

Query: 358  EWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYT 179
             W+R  I G+ +F+F++A+WWLWR RN LC ANE V+L +L +   NYA+L+  CF K  
Sbjct: 1067 NWLRIGIQGKSVFMFLAAVWWLWRARNLLCLANELVSLITLRMWTENYAHLLFRCFFKQA 1126

Query: 178  APSSPSVVTWNANRG 134
                   V WNA+RG
Sbjct: 1127 TVPDTKWVRWNAHRG 1141


>dbj|GAU22731.1| hypothetical protein TSUD_138560 [Trifolium subterraneum]
          Length = 385

 Score =  230 bits (587), Expect = 6e-70
 Identities = 114/271 (42%), Positives = 156/271 (57%), Gaps = 8/271 (2%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           LA+QV YVDIHD+ MRV DVY  G++N N LYT+IP  I   +NL PVCLN  VADR  W
Sbjct: 122 LANQVMYVDIHDLQMRVRDVYIYGKFNLNSLYTHIPPEIVNHLNLLPVCLNPRVADRYTW 181

Query: 697 KGNLDGIXXXXXXXXXXXXXT--------C*FKW*FTILELVVEIACTRKNKIPYMVSYA 542
           KGNL+G+                        + W       +  I    K K     +  
Sbjct: 182 KGNLNGLYTAQDGYHWLNRVKPTNSSTKDISWSW-------LWHIEAPEKIKFFLWTALH 234

Query: 541 *SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNL 362
            SLP R +L HRG+L    CP CN A ++  HCLR C+F    W +IG+TD  +FQ +NL
Sbjct: 235 NSLPTRAMLSHRGLLSVYACPMCNAAEETTMHCLRDCEFIKHLWKTIGYTDQTFFQGDNL 294

Query: 361 HEWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKY 182
           + W+R+  +   +F+F++A+WW+WR RNKLC ANE V+  ++     +Y  L+  C+ K 
Sbjct: 295 YAWLRKGCDSPSMFMFLAAVWWIWRARNKLCLANELVSQFTIRRCIGDYTLLLQKCYFKQ 354

Query: 181 TAPSSPSVVTWNANRGMEIVLNVDGSSLGNP 89
            + SS  +V WNA+ G  ++LNVDGSS+GNP
Sbjct: 355 KSTSSSRLVCWNAHDGTNMILNVDGSSIGNP 385


>dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subterraneum]
          Length = 1375

 Score =  244 bits (624), Expect = 7e-70
 Identities = 126/294 (42%), Positives = 164/294 (55%), Gaps = 5/294 (1%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            LADQV YVDIHD+ MRV DVYTN +WNFN+LYT IP+ + + +   PVCLNS+V DR  W
Sbjct: 1081 LADQVPYVDIHDLQMRVRDVYTNNKWNFNLLYTTIPADVMDHVKRLPVCLNSQVVDRYTW 1140

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILE-----LVVEIACTRKNKIPYMVSYA*SL 533
            KGNL+G+                F +  T  +      V  I    K K     +   +L
Sbjct: 1141 KGNLNGLYTAKEGYYWLNR----FAFSDTDTDDISWNWVWHIPAPEKIKFFIWSALHNAL 1196

Query: 532  PIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEW 353
            P + +L HRG+LQ+N+CPRCN+  +S  HCLR C+F  RFW SI                
Sbjct: 1197 PTKSMLSHRGLLQANLCPRCNIEEESTLHCLRNCEFIKRFWKSI---------------- 1240

Query: 352  VRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAP 173
                            +WW+W  RN+LC  NE  +  +L  N  N A L+  CF K    
Sbjct: 1241 ----------------VWWIWCARNQLCMDNEVTSYFTLRTNTENLAQLLRICFIKQNIS 1284

Query: 172  SSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGF 11
            S+ ++V WNA+ G+ ++LNVDGSS+GNP ISG GGL RNS GAW+HG+ GNI F
Sbjct: 1285 STATMVRWNAHGGIGMILNVDGSSIGNPGISGFGGLIRNSDGAWVHGFAGNIDF 1338


>dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subterraneum]
          Length = 724

 Score =  230 bits (587), Expect = 1e-66
 Identities = 121/299 (40%), Positives = 161/299 (53%), Gaps = 7/299 (2%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            LA+QV YVDIHD++MRV DVY +G WNFN LYT +P  I ER+   P+CLN  + D   W
Sbjct: 336  LANQVMYVDIHDLEMRVRDVYIDGIWNFNALYTALPMEIKERLISFPICLNPSINDCYTW 395

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVV-------EIACTRKNKIPYMVSYA* 539
            KGNL GI                    F+     V        +    K K         
Sbjct: 396  KGNLQGIYTAWDGYHWLNRNA------FSANPTSVVSWSWLWHLPAPEKIKFFIWTLLHN 449

Query: 538  SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLH 359
            SL  R++L HRG++                     C+F    W S+GFTD  +FQE +  
Sbjct: 450  SLATRDMLTHRGIIHD-------------------CNFVYTIWKSLGFTDRNFFQEVDSS 490

Query: 358  EWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYT 179
             W+R  ++   +FLFM+AIWW+WRTRN LC  NE +   SL +  ++YA L+  C   + 
Sbjct: 491  SWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELIPQFSLKMRIVDYALLLKNCHFNHQ 550

Query: 178  APSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
              + P +V WNA  G  ++LNVDGS++GNP ISG GGL RN+ GAWIHG+ GN+G +NI
Sbjct: 551  VTTLPKIVRWNALGGTSMILNVDGSTIGNPGISGFGGLIRNADGAWIHGFFGNLGVTNI 609


>dbj|GAU35137.1| hypothetical protein TSUD_394630 [Trifolium subterraneum]
          Length = 547

 Score =  219 bits (558), Expect = 7e-64
 Identities = 114/293 (38%), Positives = 159/293 (54%)
 Frame = -1

Query: 880 RLADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLA 701
           +LA+QV +VDIHD++MRV DVY +                         C    V D   
Sbjct: 248 KLANQVIFVDIHDLEMRVRDVYIDA------------------------CTYPSVNDCYT 283

Query: 700 WKGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVVEIACTRKNKIPYMVSYA*SLPIRE 521
           WKGNL+GI                              A   K K         SLP  E
Sbjct: 284 WKGNLNGIYT----------------------------ARDEKLKFFLWTMIHNSLPTSE 315

Query: 520 VLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRS 341
           +L HRG+LQ N+CPRCN  A++  HCLR CDF    W SIGF+D  +FQE++ ++W+R  
Sbjct: 316 MLSHRGILQGNLCPRCNTLAETTLHCLRDCDFVQIIWKSIGFSDLNFFQEDDSYDWLRNG 375

Query: 340 INGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPS 161
           ++   +F+F++A+WW+WR RN LC  +E + L +L +  M+YA L+  C +     S P 
Sbjct: 376 LSFPSMFIFLAAVWWIWRARNALCLNSELIPLFALKLRIMDYALLLRNCQSNLHETSIPK 435

Query: 160 VVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
           +V WNA  G +++LNV+GSS+GNP I G GGL RN+ GA +HG+ GN+G +NI
Sbjct: 436 LVKWNAG-GTDMILNVEGSSIGNPGIYGFGGLIRNADGACVHGFFGNLGVTNI 487


>gb|PNX66050.1| ribonuclease H, partial [Trifolium pratense]
          Length = 197

 Score =  193 bits (490), Expect = 9e-58
 Identities = 84/173 (48%), Positives = 116/173 (67%)
 Frame = -1

Query: 520 VLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRS 341
           +L HRG+LQ N+CP+CN+  ++  HCLR C+F   FW +I F D  +FQ +NL+ W+   
Sbjct: 1   MLSHRGLLQVNLCPKCNIEEETTLHCLRNCEFIKCFWKAIDFVDQTFFQGDNLYGWLLYG 60

Query: 340 INGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPS 161
           ++G   FL ++A+WW+WR RN LC  NE  +  +L  N  N A L+ TCF K     + +
Sbjct: 61  VDGPSSFLLLAAVWWIWRARNLLCMENEVTSYFTLRTNTENLAQLLRTCFLKPNISLTIT 120

Query: 160 VVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
           +V WNA+ G+ ++LNVD SS+GNP ISG  GL +NS GAW+HG  GNIGFSNI
Sbjct: 121 MVRWNAHGGIGMILNVDRSSIGNPGISGFRGLIQNSDGAWVHGCAGNIGFSNI 173


>gb|PNY17625.1| ribonuclease H [Trifolium pratense]
          Length = 188

 Score =  191 bits (485), Expect = 4e-57
 Identities = 85/173 (49%), Positives = 112/173 (64%)
 Frame = -1

Query: 520 VLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRS 341
           +L HRGMLQ+  CPRC    ++I HCLR C+F   FW SIG TD  +FQE +L+ W++  
Sbjct: 1   MLAHRGMLQNTSCPRCTTEEETILHCLRDCEFVRSFWKSIGITDHTFFQEGDLYVWMKHG 60

Query: 340 INGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPS 161
           I+G   F F++AIWW+WR RN LC  NE ++  SL +   N  +L+  CF K+    +  
Sbjct: 61  IDGPFTFSFLAAIWWIWRARNHLCMENELISYFSLRMCTENLVHLLKKCFLKHFESPTTR 120

Query: 160 VVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
            V WNA  G  ++LNVDGSS+ NP ISG GGL +N   AWI+G+ G IGFSNI
Sbjct: 121 TVRWNARGGSGMILNVDGSSIDNPGISGFGGLIQNCNSAWIYGFAGYIGFSNI 173


>dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subterraneum]
          Length = 357

 Score =  187 bits (476), Expect = 1e-53
 Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 1/293 (0%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           +A+QV +VDIHD++MRV DVY +G W+FN+L T +P  I E++    +CLN  V D   W
Sbjct: 44  IANQVMFVDIHDLEMRVRDVYIDGNWHFNLLNTTLPQEIKEKLKSITICLNPSVNDCYTW 103

Query: 697 KGNLDGIXXXXXXXXXXXXXTC*FKW*-FTILELVVEIACTRKNKIPYMVSYA*SLPIRE 521
           KGNL+GI             +        T    +  ++  +K K  +      S P ++
Sbjct: 104 KGNLNGIYTARDGYAWINRNSFSANTTSVTSWSWLWNVSAPKKIKFFFWTMLHNSFPTKD 163

Query: 520 VLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRS 341
           +L HRG                                    +D  +FQ ++++ W+R  
Sbjct: 164 MLAHRGC-----------------------------------SDHHFFQGDDVYVWLRYD 188

Query: 340 INGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPS 161
           ++   + LF++ IWW+WR RN LC  +E ++  SL ++ M+YA L+  C+       +  
Sbjct: 189 LSSSALLLFIAGIWWIWRARNALCLDSEMISFCSLKLHIMDYALLLKNCYFNTHETPTTR 248

Query: 160 VVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
           +V WN   G  ++LNVDGS +GNP ISG GGL RN+ GAW+HG+ GN+  +NI
Sbjct: 249 LVKWNVLGGTGMILNVDGSIIGNPGISGFGGLIRNADGAWVHGFFGNLAVTNI 301


>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  196 bits (498), Expect = 6e-53
 Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 13/304 (4%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            L  +V YV I D  +R+ D+Y N  W+ N+LYT + S + ERI  T   LN+   D   W
Sbjct: 903  LGTEVDYVAIQDSQIRIKDIYFNDSWHLNLLYTPLSSEMKERITSTKFILNNGTIDCFIW 962

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVVEIACTRK----------NKIPYMVS 548
            +GN+DGI                +KW   +L+    +   +            KI +++ 
Sbjct: 963  QGNIDGIYNASSG----------YKW---LLQQKYNVPSIQSWNWIWKLQAPEKIKFLIW 1009

Query: 547  YA*--SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQ 374
             A   S+P   +L HR M  S++C RC+   +++ HCLR C  A R W ++G+++  +F 
Sbjct: 1010 CACHHSIPTMYMLHHRNMTSSSICTRCSNNEETVIHCLRDCTTAKRIWEALGYSNISFFS 1069

Query: 373  ENNLHEWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTC 194
             NNL  W++    G    LF++ +WW WR RN +C  NE++ ++ + I     A+LI +C
Sbjct: 1070 SNNLESWLKIHSYGPAANLFLAGLWWNWRARNIVCVGNESIHMYQILIEVRKLASLILSC 1129

Query: 193  FTKY-TAPSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNI 17
            F+   +A   P  VTW+ +R +  VLNVDGS LG+   +G GGL R   G+WI G+ G +
Sbjct: 1130 FSIVPSALKPPRWVTWHPSRDVGFVLNVDGSCLGDSGRAGFGGLIREGDGSWIIGFSGFL 1189

Query: 16   GFSN 5
            G SN
Sbjct: 1190 GISN 1193


>gb|PNX91672.1| ribonuclease H [Trifolium pratense]
          Length = 255

 Score =  169 bits (429), Expect = 7e-48
 Identities = 76/173 (43%), Positives = 108/173 (62%)
 Frame = -1

Query: 520 VLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRS 341
           +L HRG+L  N CPRCN+ A++I H LR C F    W SI F+  ++FQ ++ + W++  
Sbjct: 1   MLNHRGLLLDNRCPRCNILAETILHYLRDCIFVQTIWKSIVFSKQIFFQGDDSYTWLQYG 60

Query: 340 INGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPS 161
           I    +FLFM+A+WW+W  RN LC  +E +    L +  ++YA L+  C         P 
Sbjct: 61  IRCSSMFLFMAAVWWIWWARNALCLDSELIPYFLLKMRIVDYALLLKNCHFHQHEVMLPK 120

Query: 160 VVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
           +V WNA  G  ++LNVDGSS+GNP I G GGL  N+ GAW+HG+ GN+G +NI
Sbjct: 121 LVRWNALDGTGMILNVDGSSIGNPVIFGFGGLICNADGAWVHGFFGNLGVTNI 173


>dbj|GAU50246.1| hypothetical protein TSUD_188980 [Trifolium subterraneum]
          Length = 458

 Score =  171 bits (432), Expect = 4e-46
 Identities = 91/294 (30%), Positives = 152/294 (51%), Gaps = 2/294 (0%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           L   V+YVDIHD+ + V DV  +   +  +LYT +P +  + IN   +  N  + D    
Sbjct: 72  LGTLVSYVDIHDLHLTVKDVLASNSPHSQILYTQLPPSASDLINNLHIRFNDSIDDAFI- 130

Query: 697 KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVVEIACTRKNKIPYMVSYA*SLPIREV 518
                                C ++    +L+L +E+    K K  + ++   S+P   +
Sbjct: 131 ---------------------CYYRLPPPLLDLNLELHLPEKIKFLFWLACHNSVPTLSL 169

Query: 517 LCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRSI 338
           L HR M  S+ CPRC    ++  HC+R CD +   W  +GF    +F  ++ HEW++   
Sbjct: 170 LHHRRMNPSSNCPRCCTHEETFLHCVRDCDLSRPIWHRLGFITPDFFSSSDAHEWLKFGS 229

Query: 337 NGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPSV 158
            G + F F +++WW WR +N +C  NET +++ L+ N  + +  I++CF+  +  +S  +
Sbjct: 230 TGSQAFAFSTSVWWAWRHQNLMCLQNETWSINRLSFNIQSMSATITSCFSSRSTTTSEEI 289

Query: 157 -VTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNI-GFSNI 2
            V WN N    ++LNVDGS LG+P  +G GG+ RN +G ++ G+ G I G S+I
Sbjct: 290 HVKWNNNNFPGVILNVDGSCLGSPVRAGFGGVIRNESGFYLSGFSGFIQGSSDI 343


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  173 bits (439), Expect = 5e-45
 Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 7/293 (2%)
 Frame = -1

Query: 865  VAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAWKGNL 686
            V YV  HD  + V DV+ +   N ++LYT +P  +   +N      NS + D + W  N 
Sbjct: 955  VPYVHYHDTALMVKDVFVSSTANLHLLYTQLPQEVVISLNSMKFSFNSTIEDTMIWSANK 1014

Query: 685  DGIXXXXXXXXXXXXXTC*------FKW*FTILELVVEIACTRKNKIPYMVSYA*SLPIR 524
             G                       +KW       +  +    K K  + ++   S+P  
Sbjct: 1015 HGTYTTSSGYLWILSLRSQLQSNQSWKW-------IWSLHLPEKIKFLFWLACHNSVPTL 1067

Query: 523  EVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRR 344
             +L HR M  S+ CPRC    +S  HC+R C  +   W SIGF+   ++   +   W++ 
Sbjct: 1068 ALLHHRNMSSSSACPRCGYFEESFLHCVRDCPTSKNLWFSIGFSAPQFYDTTDNISWIKE 1127

Query: 343  SINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCF-TKYTAPSS 167
              +G  + +F + +WW WR RN +CF NE +  + L + A   + L S+CF T  +    
Sbjct: 1128 GTSGSSLNIFAAGVWWAWRNRNSMCFTNEHIPQYRLIMEAKLMSQLFSSCFSTNSSGTLV 1187

Query: 166  PSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFS 8
               V WNA+    I+LNVDGS LG P  +G GG+ RNS GAWI G+ G I  S
Sbjct: 1188 DHFVKWNASNMTCIILNVDGSCLGTPCRAGFGGVLRNSNGAWISGFSGFIAGS 1240


>dbj|GAU12283.1| hypothetical protein TSUD_141910 [Trifolium subterraneum]
          Length = 1049

 Score =  171 bits (432), Expect = 4e-44
 Identities = 74/158 (46%), Positives = 105/158 (66%)
 Frame = -1

Query: 475  CNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNLHEWVRRSINGEKIFLFMSAIWW 296
            CN   ++  HCLR CDFA   W SIGF++  +FQ ++ + W+R  ++   +FLFM+ IWW
Sbjct: 777  CNTHLETTLHCLRDCDFAQSIWKSIGFSNLNFFQGDDPYVWIRNGLHCSSMFLFMATIWW 836

Query: 295  LWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKYTAPSSPSVVTWNANRGMEIVLN 116
            +WR RN LC  +E++  +SL +  M+YA LI  C + +   S+  +V WNA  G  ++LN
Sbjct: 837  IWRARNALCLNSESILFYSLKLRIMDYALLIENCHSNHHDTSTSKLVKWNALGGTGMILN 896

Query: 115  VDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
            VDGSSLGNP ISG GGL  N+ GAW+ G+ GN+G +NI
Sbjct: 897  VDGSSLGNPGISGFGGLIHNADGAWVLGFFGNLGVNNI 934


>dbj|GAU18899.1| hypothetical protein TSUD_228890 [Trifolium subterraneum]
          Length = 1098

 Score =  169 bits (428), Expect = 1e-43
 Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 10/297 (3%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            L + V+YVDIHD+ + V DV+        +LYT++P A  + IN T +  N  +AD   W
Sbjct: 691  LGNSVSYVDIHDVQLTVKDVFGGSFPYSQILYTHLPQAALDIINNTHLTFNESLADVFVW 750

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTILELVV----------EIACTRKNKIPYMVS 548
              N +G+                + W  +  E V+          +I    K KI + ++
Sbjct: 751  NHNKNGVYTAKSG----------YDWLLSRQEQVIGPFHSWSWIWKITGPEKLKILFWLA 800

Query: 547  YA*SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQEN 368
               ++P   +L HR +  S +CPRC+   ++  HC+R C  +   W  +GFT++ +F   
Sbjct: 801  CHEAVPTLAMLHHRNIASSPICPRCSNHNETFLHCVRDCIHSKTVWDQLGFTNSSFFDST 860

Query: 367  NLHEWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFT 188
              HEW++ S    +  LF++ +WW+WR RN +C  +ET +   L+ N  +    +  CF 
Sbjct: 861  MAHEWLKHSYFSPRRLLFLAGVWWIWRHRNNMCLGDETWSAVRLSCNIYSMVEDLKNCFP 920

Query: 187  KYTAPSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNI 17
              T   +   + WN      +V+N DGS  G P  +G G + RN+ G +I G  G+I
Sbjct: 921  SSTTEETSRCIKWNFTNFTGVVINTDGSCSGTPARTGFGCIIRNNDGRYITGASGHI 977


>dbj|GAU47648.1| hypothetical protein TSUD_27720 [Trifolium subterraneum]
          Length = 521

 Score =  163 bits (412), Expect = 9e-43
 Identities = 99/300 (33%), Positives = 139/300 (46%), Gaps = 8/300 (2%)
 Frame = -1

Query: 877 LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
           LA+QV YVDIHDI++RV DVY                                + D   W
Sbjct: 172 LANQVLYVDIHDIEIRVRDVY--------------------------------IDDYFIW 199

Query: 697 KGNLDGIXXXXXXXXXXXXXT--------C*FKW*FTILELVVEIACTRKNKIPYMVSYA 542
           KGNL+G+                        + W       +  I    K K     +  
Sbjct: 200 KGNLNGLYTAHDGYHWLNRNDFSENPTNVVSWSW-------LWHIPAPEKIKFFLWTALH 252

Query: 541 *SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENNL 362
            +LP + +L HRG+L  + CPRCN   KSI                       +F+++  
Sbjct: 253 KALPTKAMLSHRGILHDSSCPRCN---KSI-----------------------FFEDDEF 286

Query: 361 HEWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTKY 182
           + W+   ++     LF +AIWW+W TRN LC  NE+++  SL +   +YA+L+  C    
Sbjct: 287 YVWLWNGLDSPSKLLFTAAIWWIWCTRNNLCMNNESISQVSLRMRIEDYAHLLRACLFNQ 346

Query: 181 TAPSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMGNIGFSNI 2
              S+  +V WNA    +++LNVDGSS+GNP +SG GGL  NS GAW HG++GNIGFSNI
Sbjct: 347 ITMSNTKLVKWNALGSPDMILNVDGSSIGNPGVSGFGGLIHNSKGAWAHGFVGNIGFSNI 406


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  164 bits (414), Expect = 8e-42
 Identities = 89/295 (30%), Positives = 147/295 (49%), Gaps = 10/295 (3%)
 Frame = -1

Query: 877  LADQVAYVDIHDIDMRVSDVYTNGQWNFNMLYTNIPSAICERINLTPVCLNSEVADRLAW 698
            L   V  +DIHD+ + V DV +N Q +  MLYT +P A+ + IN      N  + D   W
Sbjct: 463  LCSLVPIIDIHDLHLTVKDVISNNQRSL-MLYTPLPQAVTDCINTINFRFNDAIEDVFIW 521

Query: 697  KGNLDGIXXXXXXXXXXXXXTC*FKW*FTIL---------ELVVEIACTRKNKIPYMVSY 545
              N +G                 ++W  ++            +++   + K K    ++ 
Sbjct: 522  PHNKNGTYSAKSG----------YQWLLSLSGNDNNTHSWSWILKKKISEKYKFLIWLAC 571

Query: 544  A*SLPIREVLCHRGMLQSNVCPRCNLAAKSIWHCLRYCDFATRFWSSIGFTDTMYFQENN 365
              SLP   +L HR ++ S  C RC ++ +S++HC+R C F+   W  IGF++  +F   +
Sbjct: 572  HDSLPTAALLHHRQIIASATCARCGVSDESVFHCIRDCPFSKIIWHHIGFSEPYFFAVTD 631

Query: 364  LHEWVRRSINGEKIFLFMSAIWWLWRTRNKLCFANETVTLHSLTINAMNYANLISTCFTK 185
            +  W +  + G K  LF + +WW+WR+RN  C + E++ L  L  N   + + I++CF +
Sbjct: 632  IEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQ 691

Query: 184  -YTAPSSPSVVTWNANRGMEIVLNVDGSSLGNPTISGIGGLFRNSAGAWIHGYMG 23
                  S   V WN +     +LNVDGS +G+P  +G GGL RNS G ++ G++G
Sbjct: 692  PLPVMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLG 746