BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00025143
         (553 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subte...   124   3e-35
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   120   5e-35
ref|XP_014623475.1| PREDICTED: uncharacterized mitochondrial pro...   124   9e-35
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   119   2e-34
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo...   119   3e-34
gb|KYP59934.1| Retrovirus-related Pol polyprotein from transposo...   117   5e-34
dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subte...   112   1e-33
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   117   2e-33
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   112   8e-33
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   118   1e-32
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   117   1e-32
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   118   1e-32
gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposo...   117   3e-32
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   112   4e-32
dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subt...   113   4e-32
gb|PNX95703.1| retrovirus-related Pol polyprotein from transposo...   117   4e-32
gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposo...   116   5e-32
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   113   7e-32
gb|PNX59999.1| hypothetical protein L195_g051704 [Trifolium prat...   110   7e-32
gb|KYP68421.1| Retrovirus-related Pol polyprotein from transposo...   117   1e-31

>dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subterraneum]
          Length = 1362

 Score =  124 bits (312), Expect(2) = 3e-35
 Identities = 56/97 (57%), Positives = 68/97 (70%)
 Frame = -1

Query: 385  PFLTYTTSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYF 206
            P + +        SM TR K GIV+PRLHPTLLLTH+EP S K A+Q P W +AM  EY 
Sbjct: 930  PIVPHRIHPQNTHSMSTRGKLGIVQPRLHPTLLLTHVEPTSYKQAMQHPDWLKAMQSEYG 989

Query: 205  SLMKNNTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
            +LM NNTW+LVP P  +  IGCKWVFR+K+N DGS+N
Sbjct: 990  ALMSNNTWSLVPLPANRQAIGCKWVFRLKQNPDGSIN 1026



 Score = 51.6 bits (122), Expect(2) = 3e-35
 Identities = 23/35 (65%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
            + ++KARL+AKGFHQQ G D+ E FSPV+KPVT+R
Sbjct: 1025 INKYKARLVAKGFHQQLGFDYTETFSPVVKPVTVR 1059


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 538

 Score =  120 bits (301), Expect(2) = 5e-35
 Identities = 55/83 (66%), Positives = 63/83 (75%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M TR+KAGIVKPRL PTLLLTHIEPK+ K AL    W  AM  EY +L+ N TWTLV  P
Sbjct: 1   MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSLN 95
           P K  IGCKWVFR+KEN+DG++N
Sbjct: 61  PNKTAIGCKWVFRIKENSDGTVN 83



 Score = 55.1 bits (131), Expect(2) = 5e-35
 Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFHQQ G D+NE FSPV+KPVTIR
Sbjct: 82  VNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIR 116


>ref|XP_014623475.1| PREDICTED: uncharacterized mitochondrial protein AtMg00820-like
           [Glycine max]
          Length = 235

 Score =  124 bits (310), Expect(2) = 9e-35
 Identities = 57/83 (68%), Positives = 66/83 (79%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M TRSK GIVKPRL PTLLLTH  PK+VKTAL+ P WK AM +E  +L+KNNTW LVP P
Sbjct: 1   MTTRSKNGIVKPRLQPTLLLTHAVPKTVKTALKDPKWKDAMDEEMAALLKNNTWELVPKP 60

Query: 163 PGKNVIGCKWVFRVKENADGSLN 95
           P +  IGCKWVFRVK N+DGS++
Sbjct: 61  PTRQPIGCKWVFRVKHNSDGSVS 83



 Score = 50.8 bits (120), Expect(2) = 9e-35
 Identities = 23/35 (65%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQGQ-DFNEPFSPVIKPVTIR 3
           ++++KARL+AKGFHQQ   DF E FSPV+KP+TIR
Sbjct: 82  VSKYKARLVAKGFHQQPDFDFKETFSPVVKPITIR 116


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 538

 Score =  119 bits (297), Expect(2) = 2e-34
 Identities = 55/83 (66%), Positives = 61/83 (73%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M TR+KAGIVKPRL PTLLLTH EPKS K AL    W  AM  EY +L+ N TWTLV  P
Sbjct: 1   MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSLN 95
           P K  IGCKWVFR+KEN DG++N
Sbjct: 61  PNKTAIGCKWVFRIKENLDGTVN 83



 Score = 55.1 bits (131), Expect(2) = 2e-34
 Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFHQQ G D+NE FSPV+KPVTIR
Sbjct: 82  VNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIR 116


>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 537

 Score =  119 bits (298), Expect(2) = 3e-34
 Identities = 57/92 (61%), Positives = 64/92 (69%)
 Frame = -1

Query: 370 TTSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKN 191
           TT      SM TR+KAGIVKP L PTLLLTH EPKS K AL    W  AM  EY +L+ N
Sbjct: 402 TTPITNIHSMTTRAKAGIVKPCLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNN 461

Query: 190 NTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
            TWTLV  PP K  IGCKWVFR+KEN+DG++N
Sbjct: 462 GTWTLVSLPPNKTAIGCKWVFRIKENSDGTVN 493



 Score = 53.5 bits (127), Expect(2) = 3e-34
 Identities = 24/35 (68%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFH+Q G D+NE FSPV+KPVTIR
Sbjct: 492 VNKYKARLVAKGFHKQFGSDYNETFSPVVKPVTIR 526


>gb|KYP59934.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 165

 Score =  117 bits (293), Expect(2) = 5e-34
 Identities = 54/83 (65%), Positives = 61/83 (73%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M T +KAGIVKPRL PTLLLTHIEPK+ K AL    W  AM  EY +L+ N TWTLV  P
Sbjct: 1   MTTSAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSLN 95
           P K  IGCKWVFR+KEN DG++N
Sbjct: 61  PNKTAIGCKWVFRIKENLDGTVN 83



 Score = 55.1 bits (131), Expect(2) = 5e-34
 Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFHQQ G D+NE FSPV+KPVTIR
Sbjct: 82  VNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIR 116


>dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subterraneum]
          Length = 1409

 Score =  112 bits (281), Expect(3) = 1e-33
 Identities = 51/97 (52%), Positives = 71/97 (73%)
 Frame = -1

Query: 385  PFLTYTTSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYF 206
            P  + TT++H    MQTR K+G++ P+++P LLLTH EP++ K ALQ   W  AM++E+ 
Sbjct: 890  PMPSKTTNTHP---MQTRVKSGLILPKINPKLLLTHTEPRTTKQALQDRKWLSAMTEEFE 946

Query: 205  SLMKNNTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
            +L +N TWTLVP P  ++VIGCKWVFR KEN DG++N
Sbjct: 947  ALKRNKTWTLVPLPNNRDVIGCKWVFRTKENPDGTIN 983



 Score = 55.5 bits (132), Expect(3) = 1e-33
 Identities = 26/35 (74%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
            + ++KARL+AKGFHQ QG DFNE FSPVIKP+TIR
Sbjct: 982  INKYKARLVAKGFHQVQGFDFNETFSPVIKPITIR 1016



 Score = 23.1 bits (48), Expect(3) = 1e-33
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 474 NQPE--PATSPHPTPSDSPRPHSMAT 403
           NQP   P T+  PT  D+  PHS ++
Sbjct: 850 NQPSTSPPTTLQPTQPDTELPHSTSS 875


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  117 bits (294), Expect(2) = 2e-33
 Identities = 55/83 (66%), Positives = 64/83 (77%)
 Frame = -1

Query: 343  MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
            M TR+K G  +PRL P LLLTHIEP SVK ALQ P WK AM  EY +L+ NNTWTLVP P
Sbjct: 934  MLTRAKDGFTQPRLEPRLLLTHIEPASVKQALQVPEWKTAMQAEYDALLANNTWTLVPLP 993

Query: 163  PGKNVIGCKWVFRVKENADGSLN 95
              ++ IGCKWVFRVK+N+DG+LN
Sbjct: 994  SDRSSIGCKWVFRVKQNSDGTLN 1016



 Score = 52.4 bits (124), Expect(2) = 2e-33
 Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
            L ++KARL+AKGFHQ+ G DF E FSPV+KPVTIR
Sbjct: 1015 LNKYKARLVAKGFHQRHGIDFTETFSPVVKPVTIR 1049


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  112 bits (281), Expect(2) = 8e-33
 Identities = 52/91 (57%), Positives = 72/91 (79%)
 Frame = -1

Query: 367  TSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNN 188
            T++H+   MQTR+K+GI+ PR++P LLLTH EP++VK ALQ P W  AM++E+ +L +N+
Sbjct: 973  TNNHR---MQTRAKSGII-PRINPKLLLTHTEPRTVKQALQDPKWLTAMTEEFEALKRNH 1028

Query: 187  TWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
            TWTLVP P  ++ IGCKWVFR KEN DG++N
Sbjct: 1029 TWTLVPLPKHRSAIGCKWVFRTKENPDGTIN 1059



 Score = 55.5 bits (132), Expect(2) = 8e-33
 Identities = 26/35 (74%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
            + ++KARL+AKGFHQ QG DFNE FSPVIKP+TIR
Sbjct: 1058 INKYKARLVAKGFHQIQGFDFNETFSPVIKPITIR 1092


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  118 bits (296), Expect(2) = 1e-32
 Identities = 54/87 (62%), Positives = 63/87 (72%)
 Frame = -1

Query: 358  HQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWT 179
            H    M TR+K GIVKPRL PTLLLT +EPK+ K AL  P W  AM  EY +L+ NNTW+
Sbjct: 867  HNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWS 926

Query: 178  LVPPPPGKNVIGCKWVFRVKENADGSL 98
            LVP PP +  IGCKWVFRVKEN +GS+
Sbjct: 927  LVPLPPHRTAIGCKWVFRVKENPNGSV 953



 Score = 48.9 bits (115), Expect(2) = 1e-32
 Identities = 23/33 (69%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
 Frame = -3

Query: 98   QHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
            ++KARL+AKGF+QQ G D++E FSPVIKPVT+R
Sbjct: 955  KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 987


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  117 bits (292), Expect(2) = 1e-32
 Identities = 52/84 (61%), Positives = 64/84 (76%)
 Frame = -1

Query: 346  SMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPP 167
            SMQTRSK+GI KP++ P+L L H EPK+VK AL  P W  AM  EY +L++N+TW LVP 
Sbjct: 790  SMQTRSKSGIYKPKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSALLQNHTWDLVPL 849

Query: 166  PPGKNVIGCKWVFRVKENADGSLN 95
            P  +  +GCKWVFRVKENADGS+N
Sbjct: 850  PSNRQAVGCKWVFRVKENADGSIN 873



 Score = 50.4 bits (119), Expect(2) = 1e-32
 Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
           + + KARL+AKGFHQ  G DF+E FSPVIKP+TIR
Sbjct: 872 INKFKARLVAKGFHQVHGFDFHETFSPVIKPITIR 906


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  118 bits (296), Expect(2) = 1e-32
 Identities = 54/87 (62%), Positives = 63/87 (72%)
 Frame = -1

Query: 358 HQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWT 179
           H    M TR+K GIVKPRL PTLLLT +EPK+ K AL  P W  AM  EY +L+ NNTW+
Sbjct: 532 HNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWS 591

Query: 178 LVPPPPGKNVIGCKWVFRVKENADGSL 98
           LVP PP +  IGCKWVFRVKEN +GS+
Sbjct: 592 LVPLPPHRTAIGCKWVFRVKENPNGSV 618



 Score = 48.9 bits (115), Expect(2) = 1e-32
 Identities = 23/33 (69%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
 Frame = -3

Query: 98  QHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           ++KARL+AKGF+QQ G D++E FSPVIKPVT+R
Sbjct: 620 KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 652


>gb|KYP34307.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1102

 Score =  117 bits (293), Expect(2) = 3e-32
 Identities = 53/87 (60%), Positives = 63/87 (72%)
 Frame = -1

Query: 358  HQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWT 179
            H    M TR+K GIVKPRL PTLLLT +EPK+ K AL  P W  AM  EY +L+ NNTW+
Sbjct: 807  HNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWS 866

Query: 178  LVPPPPGKNVIGCKWVFRVKENADGSL 98
            LVP PP +  IGCKWVFRVKEN +G++
Sbjct: 867  LVPLPPHRTAIGCKWVFRVKENPNGTV 893



 Score = 48.9 bits (115), Expect(2) = 3e-32
 Identities = 23/33 (69%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
 Frame = -3

Query: 98  QHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           ++KARL+AKGF+QQ G D++E FSPVIKPVT+R
Sbjct: 895 KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 927


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  112 bits (279), Expect(2) = 4e-32
 Identities = 52/83 (62%), Positives = 65/83 (78%)
 Frame = -1

Query: 343  MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
            M TRSK GI++PRL+PTLLL+++EPK+VK+AL  P W  AM  E  +L  N+TWTLV  P
Sbjct: 869  MITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLVDLP 928

Query: 163  PGKNVIGCKWVFRVKENADGSLN 95
            PG+  IGCKWVFR+KEN DGS+N
Sbjct: 929  PGRKSIGCKWVFRLKENPDGSIN 951



 Score = 53.9 bits (128), Expect(2) = 4e-32
 Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
            + ++KARL+AKGFHQQ G DF+E FSPV+KPVTIR
Sbjct: 950  INKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIR 984


>dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subterraneum]
          Length = 1295

 Score =  113 bits (283), Expect(2) = 4e-32
 Identities = 54/100 (54%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
 Frame = -1

Query: 385  PFLTYTTSSHQYSS---MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSD 215
            P LT  ++S++ ++   MQTR+K+GI  P+ HP LLLTH EPK+ K AL+   W  AM +
Sbjct: 861  PSLTSHSTSYEPTNNHPMQTRAKSGITVPKKHPKLLLTHTEPKTTKQALKDHKWFAAMIE 920

Query: 214  EYFSLMKNNTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
            E+ +L +N TWTLVP P  ++VIGCKWVFR KENADG++N
Sbjct: 921  EFEALKRNQTWTLVPLPQNRDVIGCKWVFRTKENADGTIN 960



 Score = 52.4 bits (124), Expect(2) = 4e-32
 Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104  LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
            + ++KARL+AKGFHQ  G DFNE FSP+IKP+TIR
Sbjct: 959  INKYKARLVAKGFHQVHGFDFNETFSPMIKPITIR 993


>gb|PNX95703.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 975

 Score =  117 bits (294), Expect(2) = 4e-32
 Identities = 55/92 (59%), Positives = 67/92 (72%)
 Frame = -1

Query: 370 TTSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKN 191
           TT      +MQTRSK+GI  P+ HPT+LLTH EPKSVK ALQ P W  AM  E+ +L +N
Sbjct: 432 TTVPSNCHNMQTRSKSGIFLPK-HPTVLLTHSEPKSVKQALQDPKWLTAMQSEFDALQQN 490

Query: 190 NTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
           NTW+LVP P  +  IGCKW+FR+KEN DGS+N
Sbjct: 491 NTWSLVPLPANRKAIGCKWIFRIKENPDGSIN 522



 Score = 48.1 bits (113), Expect(2) = 4e-32
 Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFHQ QG DF E FS V+KP+TIR
Sbjct: 521 INKYKARLVAKGFHQLQGFDFTETFSLVVKPLTIR 555


>gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 269

 Score =  116 bits (291), Expect(2) = 5e-32
 Identities = 52/82 (63%), Positives = 63/82 (76%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M TR+K GIVKPRL PTLLLTH+EPK+ K AL  P W  AM  EY +L+ N+TW+LVP P
Sbjct: 1   MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWSAAMQTEYNALLHNDTWSLVPLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSL 98
           P +  IGCKWVFRVKEN +G++
Sbjct: 61  PHRTAIGCKWVFRVKENPNGTV 82



 Score = 48.9 bits (115), Expect(2) = 5e-32
 Identities = 23/33 (69%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
 Frame = -3

Query: 98  QHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           ++KARL+AKGF+QQ G D++E FSPVIKPVT+R
Sbjct: 84  KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVR 116


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 1181

 Score =  113 bits (283), Expect(2) = 7e-32
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -1

Query: 376 TYTTSSHQYSSMQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLM 197
           T  T++H   +MQTR+K+GIV+P+ +P LLLT  EPK+VK AL+ P W  AM +E+ +L 
Sbjct: 640 TKLTNTH---AMQTRAKSGIVRPKQNPKLLLTSSEPKTVKQALKDPQWYTAMKEEFDALQ 696

Query: 196 KNNTWTLVPPPPGKNVIGCKWVFRVKENADGSLN 95
           +N TWTLV  PP +  IGCKWVFR KEN DGS+N
Sbjct: 697 RNQTWTLVKLPPNRKAIGCKWVFRTKENPDGSIN 730



 Score = 51.6 bits (122), Expect(2) = 7e-32
 Identities = 25/31 (80%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
 Frame = -3

Query: 92  KARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
           KARL+AKGFHQ  G DFNE FSPVIKP+TIR
Sbjct: 733 KARLVAKGFHQLHGFDFNETFSPVIKPITIR 763


>gb|PNX59999.1| hypothetical protein L195_g051704 [Trifolium pratense]
          Length = 203

 Score =  110 bits (276), Expect(2) = 7e-32
 Identities = 51/83 (61%), Positives = 61/83 (73%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           MQTR K+GIV P+L PTLLLTH EPK+VK AL  P W  AM  E+ +L +N TW+LV  P
Sbjct: 1   MQTRLKSGIVVPKLKPTLLLTHTEPKNVKQALLDPKWLAAMKSEFQALQQNQTWSLVHLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSLN 95
             +  IGCKWVFR+KEN DGS+N
Sbjct: 61  ANRKAIGCKWVFRIKENPDGSIN 83



 Score = 54.3 bits (129), Expect(2) = 7e-32
 Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQ-QGQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGFHQ QG DFNE FSPV+KP+TIR
Sbjct: 82  INKYKARLVAKGFHQLQGFDFNETFSPVVKPLTIR 116


>gb|KYP68421.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 190

 Score =  117 bits (293), Expect(2) = 1e-31
 Identities = 52/82 (63%), Positives = 63/82 (76%)
 Frame = -1

Query: 343 MQTRSKAGIVKPRLHPTLLLTHIEPKSVKTALQQPAWKQAMSDEYFSLMKNNTWTLVPPP 164
           M  R+K GIVKPRL PTLLLTH+EPK++K AL  P W  AM  EY +L+ NNTW+LVP P
Sbjct: 1   MTIRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNPTWSAAMQTEYNALVHNNTWSLVPLP 60

Query: 163 PGKNVIGCKWVFRVKENADGSL 98
           P +  IGCKWVFRVKEN +G++
Sbjct: 61  PHRTTIGCKWVFRVKENPNGTI 82



 Score = 47.0 bits (110), Expect(2) = 1e-31
 Identities = 22/35 (62%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 LTQHKARLIAKGFHQQ-GQDFNEPFSPVIKPVTIR 3
           + ++KARL+AKGF+QQ G D +E FSPVIKP+T+R
Sbjct: 82  IQKYKARLVAKGFNQQFGFDCHETFSPVIKPITVR 116